View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9483_low_14 (Length: 425)
Name: NF9483_low_14
Description: NF9483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9483_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Complemental strand, 4842555 - 4842158
Alignment:
| Q |
16 |
atatttcatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4842555 |
atatttcatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaa |
4842456 |
T |
|
| Q |
116 |
cctaaacatgaagaaaggaagtgtcattcctacttttctttcttatcaatataatttgatactgatggacctctctagcaacaatattggctcactccca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4842455 |
cctaaacatgaagaaaggaagtgtcattcctacttttctttcttatcaatataatttgatagtgatggacctctctagcaacaatattggctcactccca |
4842356 |
T |
|
| Q |
216 |
agttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtatattccttcctagta |
315 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
4842355 |
agttggttgataaataatgttggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccagaagatattggtatattccttcctagtg |
4842256 |
T |
|
| Q |
316 |
ttacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgacctctctcagaat |
413 |
Q |
| |
|
|||||||| |||| |||||| |||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
4842255 |
ttacctatatgaatttttcatcaaataactttgaaggaaatataccttcatcaatttgtaagatgaaaaaacttaagtacttggacctctctcagaat |
4842158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 14 - 416
Target Start/End: Original strand, 5172968 - 5173367
Alignment:
| Q |
14 |
acatatttcatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgc |
113 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5172968 |
acatatttcatcgaaaaacagcactggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgc |
5173067 |
T |
|
| Q |
114 |
aacctaaacatgaagaaaggaagtgtcattcctacttttctttcttatcaatataatttgatactgatggacctctctagcaacaata---ttggctcac |
210 |
Q |
| |
|
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5173068 |
aacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatataatttgatactgatggacctctctagcaacaatattgttggctcac |
5173167 |
T |
|
| Q |
211 |
tcccaagttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtatattccttcc |
310 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
5173168 |
tcccaagttggttgataaataatgatgccatacaatatttggatctatcaaacaacaattttagtggtttgcttccagaaga------tatattccttcc |
5173261 |
T |
|
| Q |
311 |
tagtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgacctctctcag |
410 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5173262 |
aagtattacctatttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgacctctctcat |
5173361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 16 - 383
Target Start/End: Original strand, 5195696 - 5196069
Alignment:
| Q |
16 |
atatttcatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaa |
115 |
Q |
| |
|
|||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| |
|
|
| T |
5195696 |
atatttcatcaaaaaacaatattggagtagacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcacttattgttagaaattgcaa |
5195795 |
T |
|
| Q |
116 |
cctaaacatgaagaaaggaagtgtcattcctacttttctttcttatcaatataatttgatactgatggacctctctagcaacaatat---tggctcactc |
212 |
Q |
| |
|
|||||||| | | |||||||||||||||||||||||||||| ||||||||||||||| || ||| |||||| ||||||||||| |||||||||| |
|
|
| T |
5195796 |
cctaaacaaggacgaaggaagtgtcattcctacttttctttcatatcaatataatttggtatacttggtcctctccagcaacaatataaatggctcactc |
5195895 |
T |
|
| Q |
213 |
ccaag---ttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtatattccttc |
309 |
Q |
| |
|
||||| |||||||||| ||||||||| ||| |||||||||| |||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
5195896 |
ccaagtaattggttgatacataatgatgacatgatatatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatatcggtatattccttc |
5195995 |
T |
|
| Q |
310 |
ctagtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaa |
383 |
Q |
| |
|
||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5195996 |
ctaatgttacctatttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaa |
5196069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 38 - 413
Target Start/End: Original strand, 5182321 - 5182699
Alignment:
| Q |
38 |
tggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaacatgaagaaaggaagt |
137 |
Q |
| |
|
|||||| | ||||||||||||||| |||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||| | |||||||| || |
|
|
| T |
5182321 |
tggagttctcattgaaactgaaaagacaaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacaaggagaaaggaggt |
5182420 |
T |
|
| Q |
138 |
gtcattcctacttttctttcttatcaatataatttgatactgatggacctctctagcaacaatat---tggctcactcccaagttggttgataaataatg |
234 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| | |||||||||| || |||||| | ||| ||| ||||||||||||||||| ||||| |
|
|
| T |
5182421 |
gtcattcctacttttctttcatatcaatataatttgatattcttggacctctccagaaacaatttagttggttcattcccaagttggttgatagataatc |
5182520 |
T |
|
| Q |
235 |
atggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtatattccttcctagtattacctatttgaacttttc |
334 |
Q |
| |
|
|| ||| | ||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
5182521 |
ataacatgaattatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatattggtatattccttcctagtgttaagtatttgaacttttc |
5182620 |
T |
|
| Q |
335 |
aatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgacctctctcagaat |
413 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
5182621 |
atggaatagctttgaaggaaatataccttcatcaattggtaagatgaaacaacttgagtacttggacctctctcagaat |
5182699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 16 - 409
Target Start/End: Original strand, 5160054 - 5160450
Alignment:
| Q |
16 |
atatttcatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaa |
115 |
Q |
| |
|
|||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5160054 |
atatttcatcaaaaaacaatattggagtagacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaa |
5160153 |
T |
|
| Q |
116 |
cctaaacatgaagaaaggaagtgtcattcctacttttctttcttatcaatataatttgatactgatggacctctctagcaacaatat---tggctcactc |
212 |
Q |
| |
|
|||||||| | | |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| || | ||||| || ||||||| | |
|
|
| T |
5160154 |
cctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatacaatttgatgttggtggacctttccggaaacaaaatagttggctcatcc |
5160253 |
T |
|
| Q |
213 |
ccaagttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtatattccttccta |
312 |
Q |
| |
|
||||||||||||||| ||||| || ||| | ||||||||| |||||||||||||||| ||||| ||||| | ||||| ||| | |||||||||| | |
|
|
| T |
5160254 |
ccaagttggttgatacataatcataacattaattatttggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaa |
5160353 |
T |
|
| Q |
313 |
gtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgacctctctca |
409 |
Q |
| |
|
|| ||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||| ||||||||||| |
|
|
| T |
5160354 |
gtgctacacagttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagataaaaaaacttttgctcttggacctctctca |
5160450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 38 - 359
Target Start/End: Complemental strand, 4857010 - 4856686
Alignment:
| Q |
38 |
tggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaacatgaagaaaggaagt |
137 |
Q |
| |
|
|||||| | ||||||||||||||| |||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
4857010 |
tggagttctcattgaaactgaaaagacaaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacatggacgaaggaagt |
4856911 |
T |
|
| Q |
138 |
gtcattcctacttttctttcttatcaatataatttgatactgatggacctctctagcaacaat---attggctcactcccaagttggttgataaataatg |
234 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| || | |||||||||| || |||||| |||| ||| ||||||||| ||||||| ||||| |
|
|
| T |
4856910 |
gtcattcctacttttctttcatatcaatataatttggtattcttggacctctccagaaacaatttagttggttcattcccaagttcgttgatagataatc |
4856811 |
T |
|
| Q |
235 |
atggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtatattccttcctagtattacctatttgaacttttc |
334 |
Q |
| |
|
|| ||| | ||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
4856810 |
ataacatgaattatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatattggtatattccttcctagtgttacctatttgaacatttc |
4856711 |
T |
|
| Q |
335 |
aatgaatagctttgaaggaaatata |
359 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
4856710 |
atggaatagctttgaaggaaatata |
4856686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 46 - 409
Target Start/End: Original strand, 5213889 - 5214252
Alignment:
| Q |
46 |
acattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcc |
145 |
Q |
| |
|
|||||||||||||||| ||||||||||| || ||||||||||||||| | ||||||||||||||||||||| |||||| | | ||||||||||||||||| |
|
|
| T |
5213889 |
acattgaaactgaaaagacaaagtggttacccaaatttcaattgaagacactcattcttagaaattgcaacttaaacaaggacaaaggaagtgtcattcc |
5213988 |
T |
|
| Q |
146 |
tacttttctttcttatcaatataatttgatactgatggacctctctagcaacaa---tattggctcactcccaagttggttgataaataatgatggcata |
242 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||||||| || |||||||| |||| | | ||||||| ||||| ||| || | | || |
|
|
| T |
5213989 |
tacttttctttcatatcaatatagtttgatattgatggacctatccagcaacaaattggttggtttattcccaagatggttcatacattcttct---atg |
5214085 |
T |
|
| Q |
243 |
caatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtatattccttcctagtattacctatttgaacttttcaatgaata |
342 |
Q |
| |
|
||||||||||| |||||| ||||| ||| |||||||| ||||| |||||||||||||||||||||||||| |||||||| |||| |||||| |||| |
|
|
| T |
5214086 |
aaatatttggatatatcaatcaacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaata |
5214185 |
T |
|
| Q |
343 |
gctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgacctctctca |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| |
|
|
| T |
5214186 |
actttgaaggaaatataccttcatcaattggtaagatgaaaaaacttgagtccttggacctctctca |
5214252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 38 - 383
Target Start/End: Original strand, 7142256 - 7142606
Alignment:
| Q |
38 |
tggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaacatgaagaaaggaagt |
137 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||| ||||||| | | | || || ||| ||||||||||| ||||||| | ||||||| | |
|
|
| T |
7142256 |
tggagtacacgttgaaactgaaaatacaaagtggtttcctagatttcaactacatacacttatg-ttaaaaattgcaaccaaaacatggacaaaggaaat |
7142354 |
T |
|
| Q |
138 |
gtcattcctacttttctttcttatcaatataatttgatactgatggacctctctagcaacaatat---tggctcactcccaag---ttggttgataaata |
231 |
Q |
| |
|
|||||||||| |||| |||| |||||| |||||||| | | |||||||||| || |||||||| ||||||||||||||| |||||||||| ||| |
|
|
| T |
7142355 |
gtcattcctagttttttttcatatcaacataatttggcattcttggacctctccagaaacaatatagttggctcactcccaagaaattggttgatacata |
7142454 |
T |
|
| Q |
232 |
atgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtatattccttcctagtattacctatttgaactt |
331 |
Q |
| |
|
||||||| |||||| |||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| || |||| ||||||| |
|
|
| T |
7142455 |
atgatgggatacaacatttggatatatcaaacaacaatttaagtggtttgcttccagaagatattggtatattccttcctagtgttgactatctgaactt |
7142554 |
T |
|
| Q |
332 |
ttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaa |
383 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
7142555 |
ttcattgaatagctttcaaggaaatataccttaatcaattggtatgatgaaa |
7142606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 5203293 - 5203345
Alignment:
| Q |
202 |
ttggctcactcccaagttggttgataaataatgatggcatacaatatttggat |
254 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
5203293 |
ttggctcattcccaagttggttgatacataatgatgatatacaatatttggat |
5203345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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