View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9483_low_17 (Length: 414)
Name: NF9483_low_17
Description: NF9483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9483_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 38662290 - 38661889
Alignment:
| Q |
1 |
cttgccatgtcttaattcttaccccattatctgatacccttataactgagtccctcactgttatgtttgatacacatgctcttgagttgtggtttcccaa |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38662290 |
cttgccatgtcttgattcttaccccattatctgatacccttataactgagtccctcactgttatgtttgatacacatgctcttgagttgtggtttcccaa |
38662191 |
T |
|
| Q |
101 |
actaccaatgctgaataaaatacaataaaaataacattagnnnnnnngttttgtttgaaataacattaaatcatgtaccattacaacaatatataaagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38662190 |
actaccaatgctgaataaaatacaataaaaataacattagattttttgttttgtttgaaataacattaaatcatgtaccattacaacaatatataaagta |
38662091 |
T |
|
| Q |
201 |
taaagctcattaattgaaaatttggattgta---------------------cacatctagatcgtttgatcaagataaaatattccagatttcaacgca |
279 |
Q |
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||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38662090 |
taaagcttattaattgaaaatttggattctacgtggtgtgagtgcagtcaaccacatctagatcgtttgatcaagatcaaatattccagatttcaacgca |
38661991 |
T |
|
| Q |
280 |
gattctttgaaatctaaaatattgagcttgactgcatgcggccacgggattgtgaccgcactcaactcgtatccatactattaaatgtaacttttcatga |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38661990 |
tattctttgaaatctaaaatattgagcttgactgcatgcggccacggggttgtgaccgcactcaactcatatccatactattaaatgtaacttttcatga |
38661891 |
T |
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| Q |
380 |
ag |
381 |
Q |
| |
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|| |
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| T |
38661890 |
ag |
38661889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 45101504 - 45101618
Alignment:
| Q |
1 |
cttgccatgtcttaattcttaccccattatctgatacccttataactgagtccctcactgttatgtttgatacacatgctcttgagttgtggtttcccaa |
100 |
Q |
| |
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||||||||||||| ||||| | ||||||||||| | |||| | ||||| |||||||| |||||||||||||||||| | | |||||| ||||| | |
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| T |
45101504 |
cttgccatgtcttgattctgattccattatctgacatttttatgatcgagtctctcactgtaatgtttgatacacatgctttcgtgttgtgatttcctag |
45101603 |
T |
|
| Q |
101 |
actaccaatgctgaa |
115 |
Q |
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|||||| |||||||| |
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| T |
45101604 |
actacctatgctgaa |
45101618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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