View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9483_low_18 (Length: 382)
Name: NF9483_low_18
Description: NF9483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9483_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 36778375 - 36778088
Alignment:
| Q |
18 |
ggcactatatcctccaaagtcgaatcattgatagagtgatggcaataggaaagtatcacatccaatgttccaggcggaaccctatcaagaacataagtaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36778375 |
ggcactatatcctccaaagtcgaatcattgatagagtgatggcaataggaaagtatcacatccaatgttccaggcggaaccctatcaagaacataagtaa |
36778276 |
T |
|
| Q |
118 |
atacctccaaaggaagtcctgtaatcccaatgaaacgaatcttccctgcttccttcaatttctggagtgcaggaattgtctcgttaacaatctgaacaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36778275 |
atacctccaaaggaagtcctgtaatcccaatgaaacgagtcttccctgcttccttcaatttctggagtgcaggaattgtctcgttaacaatctgaacaaa |
36778176 |
T |
|
| Q |
218 |
gccaaacagttagcaccccttgaaatacaattaccagttaagttacaactgaaattagatcctctttggataaacaacttaattaagc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36778175 |
gccaaacagttagcaccccttgaaatacagttaccagttaagttacaactgaaattagatcctcttcggataaacaacttaattaagc |
36778088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 282 - 368
Target Start/End: Complemental strand, 37448120 - 37448032
Alignment:
| Q |
282 |
tttggataaacaacttaattaagcgttataagcacc--acatttactacctatgtctctaaaataaaggaccctcttctatgtctatat |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37448120 |
tttggataaacaacttaattaagcgttataagcacctaacatttactacctatgtctctaaaataaaggaccctcttctatgtctatat |
37448032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University