View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9483_low_2 (Length: 707)
Name: NF9483_low_2
Description: NF9483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9483_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 284 - 689
Target Start/End: Original strand, 581268 - 581685
Alignment:
| Q |
284 |
attatattcataatacaagcttcatatcgtataaaagtc-------------gtttgtgacttcttactggtaatttgtttgctttgtaagagtcttatt |
370 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
581268 |
attatattcataatacaagcttcatttcgtataaaagtcttagtaaggtcctgtttgtgacttcttactggtaatttgtttgctttgtaagagtcttatt |
581367 |
T |
|
| Q |
371 |
tggtatttctttttattattagtggttaggaaatatgtgattttggggaagagcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgt |
470 |
Q |
| |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
581368 |
tggtatttctttt-attattaatggttaggaaatatgtgattttggggaagagcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgt |
581466 |
T |
|
| Q |
471 |
tgtgaaatttgaagaagttattggggaggatcttgagttatctttagctaaatattttttggataattgtaagttcttggagaagatgtgcttctccatt |
570 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
581467 |
tgtgaaatttgaacaagttattggggaggatcttgagttatctttagctaaatattttttggataattgtaagttcttggagaagatgtgcttctccatt |
581566 |
T |
|
| Q |
571 |
gctagtgaagtcgtggacaaagacgaggttgtggaagaaattaaggaaaagctgcaatcattttataatttcattcctgaatatcttcttgacttttcat |
670 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
581567 |
gctagccaagtcgtggacaaagacgaggttgtggaagaaattaaggagaagctgcaatcattttataatttcattcctgaatatcttcttgaattttcat |
581666 |
T |
|
| Q |
671 |
atgattagcttacagaagc |
689 |
Q |
| |
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| T |
581667 |
atgattagcttacagaagc |
581685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 580928 - 581218
Alignment:
| Q |
1 |
tttttaacaatgaatgtcatgatcttgaagtaatttatttttataataatgtagcacaagtaggataaatatttatgagtttaatccttttgttataata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
580928 |
tttttaacaatgaatgtcatgatcttgaagtaatttatttttataataatgtatcacaagtaggataaatatttatgagtttaatccttttgttgtaata |
581027 |
T |
|
| Q |
101 |
taaatcagtttcgttgcgtcatccattccaggttctggatctgaaaaagatgctaccaaaaaagctatgtgtatttccaatgttgacccatttggaggtt |
200 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
581028 |
taaatcagtttcgttgtgtcatccattccaggttctggatctgaaaaagatgctaccaaaaaagctatgtgtatttccaatgttgacccatttggaggtt |
581127 |
T |
|
| Q |
201 |
ggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttctcgagacacttgttctcaaggttcgtaattaattatatt |
291 |
Q |
| |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
581128 |
ggcttcgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttctcgagacacttgttctcaaggttcgtaattacttatatt |
581218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 412 - 689
Target Start/End: Original strand, 1207768 - 1208042
Alignment:
| Q |
412 |
tttggggaagagcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgttgtgaaatttgaagaagttattggggaggatcttgagttat |
511 |
Q |
| |
|
|||| |||||||||||||| |||| ||| ||| ||| | ||||||||| ||||||||||||||||||||||||||||| ||| || |||| ||||||| |
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| T |
1207768 |
tttgaggaagagcttttgaattcttctgttgttcccgaatgtttggcttctctccatgttgtgaaatttgaagaagttaatggagatgatcatgagttaa |
1207867 |
T |
|
| Q |
512 |
ctttagctaaatattttttggataattgtaagttcttggagaagatgtgcttctccattgctagtgaagtcgtggacaaagacgaggttgtggaagaaat |
611 |
Q |
| |
|
||||||| ||| ||| |||| ||| ||| | ||||||||| |||||| |||||| | | |||| || || ||||||||| |||||| |||||||| | |
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| T |
1207868 |
ttttagctcaatttttggtggaaaatggtatggtcttggagaggatgtgtttctccctggttagtcaaatcccggacaaagatgaggttatggaagaatt |
1207967 |
T |
|
| Q |
612 |
taaggaaaagctgcaatcattttataatttcattcctgaatatcttcttgacttttcatatgattagcttacagaagc |
689 |
Q |
| |
|
|||||| ||| || || ||| ||||||||||||||| || || |||| ||||||||||| ||| |||||||||| |
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|
| T |
1207968 |
taaggagaagatgtcctcgtttcataatttcattcctg---atgttgttgagttttcatatgagtagtttacagaagc |
1208042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 412 - 688
Target Start/End: Original strand, 1215029 - 1215302
Alignment:
| Q |
412 |
tttggggaagagcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgttgtgaaatttgaagaagttattggggaggatcttgagttat |
511 |
Q |
| |
|
|||| |||||| |||||||||||||| | |||||| ||||||||| ||||||||||||||||||||||||||||| ||| || ||| |||| ||| |
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|
| T |
1215029 |
tttgaggaagaacttttgagttctgccgtggtgcccggtagtttggcttctctccatgttgtgaaatttgaagaagttaatggagacaatcatgagatat |
1215128 |
T |
|
| Q |
512 |
ctttagctaaatattttttggataattgtaagttcttggagaagatgtgcttctccattgctagtgaagtcgtggacaaagacgaggttgtggaagaaat |
611 |
Q |
| |
|
||||||||||| ||| || | ||| || | |||||||||||||||| ||||| |||||||| || || ||||||||| |||||| |||||||| | |
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|
| T |
1215129 |
ttttagctaaattctttgtgaaaaatgttatgatcttggagaagatgtgtttctctcttgctagtcaaatcccggacaaagatgaggttatggaagaatt |
1215228 |
T |
|
| Q |
612 |
taaggaaaagctgcaatcattttataatttcattcctgaatatcttcttgacttttcatatgattagcttacagaag |
688 |
Q |
| |
|
|||||| ||| || |||||| ||||||||| |||| || || |||| |||||||||| |||| ||||||||| |
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|
| T |
1215229 |
taaggagaagttgtcctcatttcataatttcaatcct---catgttgttgaattttcatatgcttagtttacagaag |
1215302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 149 - 283
Target Start/End: Original strand, 1207516 - 1207650
Alignment:
| Q |
149 |
gatgctaccaaaaaagctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccg |
248 |
Q |
| |
|
||||| ||||||| |||| || |||||||||||||||||| ||||||||||||| || |||||||| || ||||||||| | || ||||||||| |||| |
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|
| T |
1207516 |
gatgcaaccaaaagagctgtgcgtatttccaatgttgaccgatttggaggttggcttagttagtgtcgaaattctcttagcattacttcaaaagacacct |
1207615 |
T |
|
| Q |
249 |
gttctcgagacacttgttctcaaggttcgtaatta |
283 |
Q |
| |
|
|||||| ||||||| ||||| |||||| ||||||| |
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|
| T |
1207616 |
gttctcaagacactcgttcttaaggtttgtaatta |
1207650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 165 - 283
Target Start/End: Original strand, 1201351 - 1201469
Alignment:
| Q |
165 |
ctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttctcgagacacttg |
264 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||||||| || |||||||||||| |||||| ||| || |||||| ||||||||||| ||||||| | |
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|
| T |
1201351 |
ctatgtgtattttcaacgttgacacatttggaggttggcttgattagtgttgataatctcttggtcttactacaaaagacaccggttctcaagacactag |
1201450 |
T |
|
| Q |
265 |
ttctcaaggttcgtaatta |
283 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
1201451 |
ttctcaaggttcgtaatta |
1201469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 1214741 - 1214837
Alignment:
| Q |
166 |
tatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttctcgagacact |
262 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||| || |||||||||||||||| ||| |||||||| ||||| ||||||||||| ||||||| |
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|
| T |
1214741 |
tatgtgtatttccaatgttggcccatttggatgttggcttacttagtgttgatattctgttagccttgcttgaaaagacaccggttctcaagacact |
1214837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 417 - 576
Target Start/End: Original strand, 1201639 - 1201798
Alignment:
| Q |
417 |
ggaagagcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgttgtgaaatttgaagaagttattggggaggatcttgagttatcttta |
516 |
Q |
| |
|
|||||||| | | |||||||||| ||||||| | ||||||||| ||||||||||||||||||| ||||||||| ||| || ||| ||| ||| ||| |
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|
| T |
1201639 |
ggaagagcgtctaagttctgctgttgtgcccgaatgtttggcttctctccatgttgtgaaatttaaagaagttaatggagacaatcatgatctatttttg |
1201738 |
T |
|
| Q |
517 |
gctaaatattttttggataattgtaagttcttggagaagatgtgcttctccattgctagt |
576 |
Q |
| |
|
||||||| |||| || | ||| | | ||||||||||||||| |||||| |||||||| |
|
|
| T |
1201739 |
gctaaattttttatgaaaaatggcattagcttggagaagatgtgtttctcccttgctagt |
1201798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 430 - 528
Target Start/End: Complemental strand, 929300 - 929202
Alignment:
| Q |
430 |
agttctgctgatgtgcccaagcgtttggcttttctccatgttgtgaaatttgaagaagttattggggaggatcttgagttatctttagctaaatatttt |
528 |
Q |
| |
|
||||| |||| ||||||| | ||||||||| |||| |||||||||||||| ||||||||||||| || |||| ||| ||| ||| ||||||| |||| |
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|
| T |
929300 |
agttcggctgttgtgcccgaatgtttggcttctctctatgttgtgaaatttaaagaagttattggagacgatcatgatctatttttggctaaatttttt |
929202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 322
Target Start/End: Original strand, 1214868 - 1214906
Alignment:
| Q |
284 |
attatattcataatacaagcttcatatcgtataaaagtc |
322 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
1214868 |
attatattcatgatacaagcttcatatcatataaaagtc |
1214906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 8188851 - 8188730
Alignment:
| Q |
162 |
aagctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttctcgagacac |
261 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||| ||| |||||||||||||| | ||||||||| |||||| |
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| T |
8188851 |
aagctatgtgtatttccaatgttgaccgatttggaggttggtttagttagtgttaatattctgttagccttgcttcaaaagacgccggttctcaagacac |
8188752 |
T |
|
| Q |
262 |
ttgttctcaaggttcgtaatta |
283 |
Q |
| |
|
| ||||| |||||| ||||||| |
|
|
| T |
8188751 |
tagttcttaaggttggtaatta |
8188730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 412 - 566
Target Start/End: Complemental strand, 8188591 - 8188437
Alignment:
| Q |
412 |
tttggggaagagcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgttgtgaaatttgaagaagttattggggaggatcttgagttat |
511 |
Q |
| |
|
|||| |||||||||| |||||||||||| ||||||| | ||||||||| ||||||||||||||||||||||||| ||| | | || |||| |||||||| |
|
|
| T |
8188591 |
tttgtggaagagcttctgagttctgctgttgtgcccgattgtttggcttctctccatgttgtgaaatttgaagaaattaatagagacgatcatgagttat |
8188492 |
T |
|
| Q |
512 |
ctttagctaaatattttttggataattgtaagttcttggagaagatgtgcttctc |
566 |
Q |
| |
|
|||||||| || |||| |||| ||| ||| | ||||||||| ||||| ||||| |
|
|
| T |
8188491 |
ttttagctacattttttatggaaaatggtatgatcttggagagtatgtgtttctc |
8188437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 8188904 - 8188864
Alignment:
| Q |
97 |
aatataaatcagtttcgttgcgtcatccattccaggttctg |
137 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||||||||| |
|
|
| T |
8188904 |
aatataaatcagtttcgttgtgccattcattccaggttctg |
8188864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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