View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9483_low_31 (Length: 266)

Name: NF9483_low_31

Description: NF9483

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9483_low_31

[»] chr5 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 116; E-Value: 4e-59

Query Start/End: Original strand, 20 - 203

Target Start/End: Complemental strand, 6607330 - 6607142

Alignment:

Q	20	acaatattaagatgaaaatcgtcctaatgtaagcctc-aattcaccaactaaaataaaagccttaatacaacaatcaagtta----catacaaaatcaca	114	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|
T	6607330	acaatattaagataaaaatcgtcctaatgtaagcctctaacacaccaaccaaaataaaagccttaatacaacaatcaagttaattacatacaaaatcaaa	6607231	T

Q	115	ccaccgatctccataggatattaggcatttgcagcaatgatgaaagcaatggtagcatgtcaaaatctgtcgcaagcatcaaaataata	203	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6607230	ccaccgatctccttaggatattaagcatttgcagcaatgatgaaagaaatagtagcatgccaaaatctgttccaagcatcaaaataata	6607142	T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 39; E-Value: 0.0000000000004

Query Start/End: Original strand, 139 - 213

Target Start/End: Original strand, 11388941 - 11389015

Alignment:

Q	139	gcatttgcagcaatgatgaaagcaatggtagcatgtcaaaatctgtcgcaagcatcaaaataatagatcacaaaa	213	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\| \| \|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	11388941	gcatttgcagcaatgatgaaagaaacagtagcatgccaaaatttatcataagcatcaaattaatagatcacaaaa	11389015	T

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