View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9483_low_33 (Length: 264)
Name: NF9483_low_33
Description: NF9483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9483_low_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 49105792 - 49105553
Alignment:
| Q |
7 |
tttcgtgttaaccacattattataatagtacaactaactctattgtttatcaaagaaagaagacttcaacttttttattaatttggtcttcctttgctac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
49105792 |
tttcgtgttaaccacattattataatagtacaacgaactctattgtttatcaaagaaagaagacttcaacttttttgttaatttggtcttcctttgctac |
49105693 |
T |
|
| Q |
107 |
ctctgactctgttcaattcaaaaatttcaaataatatacacacacatgtgttttctttttaatgttgtttgtcggttcagctggaatgaaagtgagagtg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49105692 |
ctctgactctgttcaattcaaaaatttcaaataatatacacacacttgtgttttctttttaatgttgtttgtcggttcagctggaatgaaagtgagagtg |
49105593 |
T |
|
| Q |
207 |
acagcatcaaattaagctataataaataatagtgttagct |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49105592 |
acagcatcaaattaagctataataaataatagtgttagct |
49105553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University