View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9483_low_42 (Length: 243)
Name: NF9483_low_42
Description: NF9483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9483_low_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 67 - 229
Target Start/End: Original strand, 1242329 - 1242490
Alignment:
| Q |
67 |
taatatacatgtacatgatatccaaatgatcaggacttattggcgatttgtctttcaacaaaagaaatctaatnnnnnnnnttcatgtaattatcaaagt |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
1242329 |
taatatacatgtacatgatatccaaatgatcaggacttattggcgatttgtctttcaacaaaagaaatctaataaaaaaa-ttcatgcaattatcaaagt |
1242427 |
T |
|
| Q |
167 |
taaacaaaacttcttgcagttgaaggtcattaccttcttcaaccgctcatgcattcaccacca |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1242428 |
taaacaaaacttcttgcagttgaaggtcattaccttcttcaacggctcatgcattcaccacca |
1242490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 67 - 229
Target Start/End: Complemental strand, 41521729 - 41521569
Alignment:
| Q |
67 |
taatatacatgtacatgatatccaaatgatcaggacttattggcgatttgtctttcaacaaaagaaatctaatnnnnnnnnttcatgtaattatcaaagt |
166 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
41521729 |
taatatacatgtacatgatatctaa-tgatcaggatttattggcgatctgtctttcaacaaaagaaatctaataaaaaaa-ttcatgcaattatcaaagt |
41521632 |
T |
|
| Q |
167 |
taaacaaaacttcttgcagttgaaggtcattaccttcttcaaccgctcatgcattcaccacca |
229 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41521631 |
taaacaaaacttcttgcagttggaggtcattaccttcttcaaccgttcatgcattcaccacca |
41521569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 67 - 229
Target Start/End: Original strand, 472884 - 473045
Alignment:
| Q |
67 |
taatatacatgtacatgatatccaaatgatcaggacttattggcgatttgtctttcaacaaaagaaatctaatnnnnnnnnttcatgtaattatcaaagt |
166 |
Q |
| |
|
||||||||||||||| ||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
472884 |
taatatacatgtacacgatatccaa-tgattaggatttattggcgatttgtctttcaacaaaagaaatctaataaaaaaa-ttcatgtaattgtcaaagt |
472981 |
T |
|
| Q |
167 |
taaacaaaa-cttcttgcagttgaaggtcattaccttcttcaaccgctcatgcattcaccacca |
229 |
Q |
| |
|
|||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
472982 |
taaaaaaaaacttcttgcagttggaggtcattaccttcttcaaccgctcatgcattcaccacca |
473045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University