View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9483_low_47 (Length: 231)
Name: NF9483_low_47
Description: NF9483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9483_low_47 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 38662503 - 38662290
Alignment:
| Q |
18 |
ggattgagtcactgcatgcaaaatgcataggagggtgtcttatatcataagttccctttatgcttgtgtaaactatatctgatacaaatactgcagaggt |
117 |
Q |
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| T |
38662503 |
ggattgagtcactgcatgcaaaatgcataggagggtgtcttatatcataagttccctttatgcttgtgtaaactatatctgatacaaatactgcagaggt |
38662404 |
T |
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| Q |
118 |
tttgttgctgcaatctttactgaggcagtaaaattggtcaattataataggattttttactgtatccatgtgaatattactgaatgttactcctgatact |
217 |
Q |
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| T |
38662403 |
tttgttgctgcaatctttactgaggcagtaaaattggtcaattataataggattttttactgtatccatgtgaatattactgaatgttactcctgatact |
38662304 |
T |
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| Q |
218 |
gatcctgatccacc |
231 |
Q |
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| T |
38662303 |
gatcctgatccacc |
38662290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 45101296 - 45101501
Alignment:
| Q |
23 |
gagtcactgcatgcaaaatgcataggagggtgtcttatatcataagttccctttatgcttgtgtaaactatatctgatacaaatactgcagaggttttgt |
122 |
Q |
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| T |
45101296 |
gagtcactacaagcaaaatgcataggagggctttttatatcataagttcctttgatgtttgtgtaaagaatgtttgatacagatactgctgaggttttgt |
45101395 |
T |
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| Q |
123 |
tgctgcaatctttactgaggcagtaaaattggtcaattataataggattttttactgtatccatgtgaatattactgaatgttactcctgatactgatcc |
222 |
Q |
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| T |
45101396 |
tggtacaatctttggttaggcaatagtattggtcaattatgattggatttcttacactaatcatgtgaatattattgaatgttactcctgaaactgaccc |
45101495 |
T |
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| Q |
223 |
tgatcc |
228 |
Q |
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| T |
45101496 |
tgatcc |
45101501 |
T |
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