View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9483_low_5 (Length: 590)
Name: NF9483_low_5
Description: NF9483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9483_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 17 - 573
Target Start/End: Original strand, 3431719 - 3432275
Alignment:
| Q |
17 |
acaaactggcaagatggattggaggtggatccacaacaagtcaacaacgaccatcactagcaaagggggagttatcgtgatggccaagttggaatcctct |
116 |
Q |
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| T |
3431719 |
acaaactggcaagatggattggaggtggatccacaacaagtcaacaacgaccatcgctagcaaaggggaagttatcgtgatggccaagttggaatcctct |
3431818 |
T |
|
| Q |
117 |
ccatttttcgaaagaaatgaaatgattcatttggagatataattttttgaaagaaatgaaatgatttatttggagatatatagacataaaacgtgaaaaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3431819 |
ccatttttcgaaagaaatgaaatgattcatttggagatataatttttcgaaagtaatgaaatgattcatttggagatatatagacataaaacgtgaaaaa |
3431918 |
T |
|
| Q |
217 |
tggatgccgccatctttaattaaaattttttcaaattcgtatgtatttctctttaacc-aagacatttccatttatttt-aaaaaatagagaagatcctt |
314 |
Q |
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||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
3431919 |
tggatgccgccatctttaattaattttttttcaaattcgtgtgtatttctctttaaccaaagacatttccatttattttaaaaaaatagagaagatcctt |
3432018 |
T |
|
| Q |
315 |
tctcctttgatagtcgggtgaagatcctttgatagtcgtgagatatatagacacataagtgcaaaagtgtgacattaaaatatgtccaaatcttttttat |
414 |
Q |
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| T |
3432019 |
tctcctttgatagtcgggtgaagatcctttgatagtcgtgagatatatagacac--aagtgcaaaagtgtgacattaaaatatgtccaaatcttttttat |
3432116 |
T |
|
| Q |
415 |
acacctcaaaacatttaaaaactataataatgacataaagcgatgttgactctctcaaaatcagcccatagacaagagaggagtccccgtcttgaagatc |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
3432117 |
acacctcaaaacatttaaaaactataataatgacataaagcgatgttgactctctcaaaatcagcccatagacaagagaggagtcctcatcttgaagatc |
3432216 |
T |
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| Q |
515 |
ctcagaaggcaagcatgttggtgaatcctacgataaatcaaaaatgttcccagtgatct |
573 |
Q |
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| T |
3432217 |
ctcagaaggcaagcatgttggtgaatcctacgataaatcaaaaatgttcccagtgatct |
3432275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 404 - 445
Target Start/End: Original strand, 41377919 - 41377960
Alignment:
| Q |
404 |
atcttttttatacacctcaaaacatttaaaaactataataat |
445 |
Q |
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| T |
41377919 |
atcttttttatacacctcacaacatttaaaaactatagtaat |
41377960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 445
Target Start/End: Complemental strand, 36973882 - 36973835
Alignment:
| Q |
398 |
gtccaaatcttttttatacacctcaaaacatttaaaaactataataat |
445 |
Q |
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||||||||||||| |||||||| |||| ||||||||||||||| |||| |
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| T |
36973882 |
gtccaaatcttttatatacaccacaaatcatttaaaaactatagtaat |
36973835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 446
Target Start/End: Complemental strand, 44415004 - 44414957
Alignment:
| Q |
398 |
gtccaaatcttttttatacacctcaaaacatttaaaaactataataatg |
446 |
Q |
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| T |
44415004 |
gtccaaatcttttt-atacaccccaaaacatttaaaaactttagtaatg |
44414957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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