View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9484_high_17 (Length: 348)

Name: NF9484_high_17
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9484_high_17
NF9484_high_17
[»] chr6 (2 HSPs)
chr6 (20-326)||(6189498-6189808)
chr6 (169-303)||(3008763-3008895)
[»] chr8 (4 HSPs)
chr8 (199-303)||(38731818-38731922)
chr8 (137-303)||(41566145-41566315)
chr8 (137-273)||(1029682-1029821)
chr8 (169-253)||(11954562-11954650)
[»] chr2 (3 HSPs)
chr2 (199-303)||(39228928-39229032)
chr2 (178-253)||(12419503-12419582)
chr2 (178-253)||(12431563-12431642)
[»] chr7 (2 HSPs)
chr7 (123-303)||(10623300-10623479)
chr7 (169-303)||(27900253-27900391)
[»] chr1 (2 HSPs)
chr1 (137-303)||(48563218-48563388)
chr1 (266-303)||(14167890-14167927)
[»] chr5 (1 HSPs)
chr5 (205-303)||(43168667-43168764)
[»] chr4 (3 HSPs)
chr4 (135-303)||(18402803-18402970)
chr4 (169-303)||(2815004-2815142)
chr4 (169-303)||(38011576-38011714)
[»] chr3 (1 HSPs)
chr3 (199-303)||(35740099-35740203)


Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 6189498 - 6189808
Alignment:
Q  20 ggtggtatgttcgttggagtcttcggtggttttgtgttcttgatcaaagattggtgattctagattttggccttcttggtggttggtttggaagttcgca 119  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6189498 ggtggtatgttcgttggagtcttcggtggttttgtgtacttgatcaaagattggcgattctagattttggccttcttggtggttggtttggaagttcgca 6189597  T
Q  120 gcttgtttgtgattaaaaaacccgaaagggtctctttctattaacatgtaagggcctcgttactaatgtattggactca----tcgatctgagttcttac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    ||||||| | ||||||     
T  6189598 gcttgtttgtgattaaaaaacccgaaagggtctctttctattaacatgtaagggcctggttactaatgtattggactcatccctcgatctaaattcttag 6189697  T
Q  216 gcgtctgtttgaaatcatttgtgtttggagacttgacttcttcgactcattgatgtttccagatttgttgagatttgctggtttcaaggcgtgatgtcaa 315  Q
    || |||||||||||   ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6189698 gcatctgtttgaaactttttgtgtttggagacttgacttcttcgactcattgatgtgtccagatttgttgagatttgctggtttcaaggcgtgatgtcaa 6189797  T
Q  316 cctaccctatg 326  Q
    ||||| |||||    
T  6189798 cctacactatg 6189808  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 303
Target Start/End: Complemental strand, 3008895 - 3008763
Alignment:
Q  169 aagggcctcgttactaatgtattggactcatc----gatctgagttcttacgcgtctgtttgaaatcatttgtgtttggagacttgacttcttcgactca 264  Q
    ||||| || |||||||| ||||| ||||||||    ||||||||||||||| ||| |||||||      |||||||||| | | ||| |||||||||||     
T  3008895 aagggtctggttactaacgtattagactcatccttcgatctgagttcttacacgtatgtttga------ttgtgtttggtggcctgatttcttcgactct 3008802  T
Q  265 ttgatgtttccagatttgttgagatttgctggtttcaag 303  Q
     |||||||||||||||||||||||| ||  |||||||||    
T  3008801 atgatgtttccagatttgttgagatctgtaggtttcaag 3008763  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 38731818 - 38731922
Alignment:
Q  199 tcgatctgagttcttacgcgtctgtttgaaatcatttgtgtttggagacttgacttcttcgactcattgatgtttccagatttgttgagatttgctggtt 298  Q
    ||||| ||||||||||||||| ||||||||| || |||||||||| | | ||||||||||||||| ||||||||| || || ||||||||||||  ||||    
T  38731818 tcgatgtgagttcttacgcgtttgtttgaaaccaattgtgtttggtggcatgacttcttcgactctttgatgttttcaaatctgttgagatttgtaggtt 38731917  T
Q  299 tcaag 303  Q
    |||||    
T  38731918 tcaag 38731922  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 137 - 303
Target Start/End: Original strand, 41566145 - 41566315
Alignment:
Q  137 aaacccgaaagggtctctttctattaacatgtaagggcctcgttactaatgtattggactcatc----gatctgagttcttacgcgtctgtttgaaatca 232  Q
    |||||||||||||| |  |||| |||||   |||||| || |||||||| ||||| ||||||||    ||||||||||||||||||| |||||||| ||     
T  41566145 aaacccgaaagggtatggttctgttaacccataagggtctggttactaacgtattagactcatcccacgatctgagttcttacgcgtatgtttgaattcc 41566244  T
Q  233 tttgtgtttggagacttgacttcttcgactcattgatgtttccagatttgttgagatttgctggtttcaag 303  Q
     ||||||||||   ||||||| ||| |||||  |||||||| ||| | ||||||| | ||| |||||||||    
T  41566245 attgtgtttggttgcttgactgctttgactctctgatgttttcaggtctgttgaggtctgcaggtttcaag 41566315  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 273
Target Start/End: Complemental strand, 1029821 - 1029682
Alignment:
Q  137 aaacccgaaagggtctctttctattaacatgtaagggcctcgttactaatgtattggactcatc----gatctgagttcttacgcgtctgtttgaaatca 232  Q
    ||||||| ||||||||  ||||||||||  | ||||| || |||||||| ||||||||||||||    ||||||||||||||||||| ||||||||  |     
T  1029821 aaacccggaagggtctggttctattaacccgaaagggtct-gttactaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaatccc 1029723  T
Q  233 tttgtgtttggagacttgacttcttcgactcattgatgttt 273  Q
     ||||||||||   ||||||| |||||||||  ||||||||    
T  1029722 gttgtgtttggctgcttgactgcttcgactctctgatgttt 1029682  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 11954650 - 11954562
Alignment:
Q  169 aagggcctcgttactaatgtattggactcatc----gatctgagttcttacgcgtctgtttgaaatcatttgtgtttggagacttgact 253  Q
    ||||| || |||| ||| ||||||||||||||    |||||||||||||||||||||||||||| ||  |||||||||| ||| |||||    
T  11954650 aagggtctggttattaacgtattggactcatccctggatctgagttcttacgcgtctgtttgaattccgttgtgtttggtgacatgact 11954562  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 39228928 - 39229032
Alignment:
Q  199 tcgatctgagttcttacgcgtctgtttgaaatcatttgtgtttggagacttgacttcttcgactcattgatgtttccagatttgttgagatttgctggtt 298  Q
    ||||||||||||||||||||||||| |||||    |||||||||| |  ||||||||||||| ||  |||||||| ||||| ||||||||||||| | ||    
T  39228928 tcgatctgagttcttacgcgtctgtctgaaactgcttgtgtttggtggtttgacttcttcgaatctctgatgttttcagatctgttgagatttgcagttt 39229027  T
Q  299 tcaag 303  Q
    |||||    
T  39229028 tcaag 39229032  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 12419582 - 12419503
Alignment:
Q  178 gttactaatgtattggactcatc----gatctgagttcttacgcgtctgtttgaaatcatttgtgtttggagacttgact 253  Q
    |||||||| ||||||||||||||    ||||||||||||||||||| ||||||||| |  |||||||||| | |||||||    
T  12419582 gttactaacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtggcttgact 12419503  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 12431642 - 12431563
Alignment:
Q  178 gttactaatgtattggactcatc----gatctgagttcttacgcgtctgtttgaaatcatttgtgtttggagacttgact 253  Q
    |||||||| ||||||||||||||    ||||||||||||||||||| ||||||||| |  |||||||||| | |||||||    
T  12431642 gttactaacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtggcttgact 12431563  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 123 - 303
Target Start/End: Original strand, 10623300 - 10623479
Alignment:
Q  123 tgtttgtgattaaaaaacccgaaagggtctctttctattaacatgtaagggcctcgttactaatgtattggactcatc----gatctgagttcttacgcg 218  Q
    ||||||||| | |||||||||||| |||||  ||||||||||  |  ||||  | |||||||| ||||||||||||||    |||||||||||| ||||     
T  10623300 tgtttgtgactcaaaaacccgaaaaggtctggttctattaacccgatagggtttggttactaacgtattggactcatccctcgatctgagttctaacgca 10623399  T
Q  219 tctgtttgaaatcatttgtgtttggagacttgacttcttcgactcattgatgtttccagatttgttgagatttgctggtttcaag 303  Q
    | ||||||||     |||||||||| |   | ||||||| |||||  |||||||||||||||||||||||| ||| |||||||||    
T  10623400 tttgtttgaa-----ttgtgtttggtggtctaacttctttgactctctgatgtttccagatttgttgagatctgcaggtttcaag 10623479  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 303
Target Start/End: Complemental strand, 27900391 - 27900253
Alignment:
Q  169 aagggcctcgttactaatgtattggactcatc----gatctgagttcttacgcgtctgtttgaaatcatttgtgtttggagacttgacttcttcgactca 264  Q
    ||||| || ||||||||  |||||||||||||    ||||||||||||||| ||| ||||||||| |   ||||||||| | | ||||| |||||||||     
T  27900391 aagggtctggttactaacatattggactcatccctcgatctgagttcttacacgtatgtttgaaacctgctgtgtttggtggcctgactacttcgactct 27900292  T
Q  265 ttgatgtttccagatttgttgagatttgctggtttcaag 303  Q
     |||| ||| || |||||||||  ||||| |||||||||    
T  27900291 ctgatattttcaaatttgttgaagtttgcaggtttcaag 27900253  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 137 - 303
Target Start/End: Original strand, 48563218 - 48563388
Alignment:
Q  137 aaacccgaaagggtctctttctattaacatgtaagggcctcgttactaatgtattggactcatc----gatctgagttcttacgcgtctgtttgaaatca 232  Q
    ||||| |||||||| |  |||||||||| || ||||| || ||||||||  |||||||||||||    ||||| ||||||||||||| ||||||||   |    
T  48563218 aaacctgaaagggtatggttctattaacctgaaagggtctggttactaacatattggactcatcccacgatctaagttcttacgcgtatgtttgaatcta 48563317  T
Q  233 tttgtgtttggagacttgacttcttcgactcattgatgtttccagatttgttgagatttgctggtttcaag 303  Q
     ||||||||||   ||||||| ||| |||||  || ||||||||| | ||||||||| ||| |||||||||    
T  48563318 gttgtgtttggttgcttgactactttgactctctgttgtttccaggtctgttgagatctgcaggtttcaag 48563388  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 14167927 - 14167890
Alignment:
Q  266 tgatgtttccagatttgttgagatttgctggtttcaag 303  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  14167927 tgatgtttccagatctgttgagatttgcaggtttcaag 14167890  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 303
Target Start/End: Complemental strand, 43168764 - 43168667
Alignment:
Q  205 tgagttcttacgcgtctgtttgaaatcatttgtgtttggagacttgacttcttcgactcattgatgtttccagatttgttgagatttgctggtttcaag 303  Q
    |||||||||||| |||||||||| |||  ||||| |   || |||||||||||||||||  |||||||| ||||| ||||||||| ||| |||||||||    
T  43168764 tgagttcttacgtgtctgtttgacatcgcttgtgctgctag-cttgacttcttcgactctctgatgtttgcagatctgttgagatctgcaggtttcaag 43168667  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 303
Target Start/End: Complemental strand, 18402970 - 18402803
Alignment:
Q  135 aaaaacccgaaagggtctctttctattaacatgtaagggcctcgttactaatgtattggactcatc----gatctgagttcttacgcgtctgtttgaaat 230  Q
    ||||||||||||||||||  |||||  |||  | ||||| || |||||||| |||||| |||||||    |||||||||||||||  || |||||  |||    
T  18402970 aaaaacccgaaagggtctggttctac-aacccgaaagggtctggttactaacgtattgaactcatccatcgatctgagttcttacatgtttgttttgaat 18402872  T
Q  231 catttgtgtttggagacttgacttcttcgactcattgatgtttccagatttgttgagatttgctggtttcaag 303  Q
        ||||||||| ||| ||||||||| | |||  |||||||||||||||||||||||| ||| | |||||||    
T  18402871 ----tgtgtttggtgacatgacttctttgtctctctgatgtttccagatttgttgagatctgcagatttcaag 18402803  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 303
Target Start/End: Complemental strand, 2815142 - 2815004
Alignment:
Q  169 aagggcctcgttactaatgtattggactcatc----gatctgagttcttacgcgtctgtttgaaatcatttgtgtttggagacttgacttcttcgactca 264  Q
    ||||| || |||||||||||||||||||||||    ||| ||||||||||||||| |||||||| ||  |||| |||||   ||| ||| |||||||||     
T  2815142 aagggtctggttactaatgtattggactcatcctacgatatgagttcttacgcgtatgtttgaattccgttgtctttggttgcttaactgcttcgactct 2815043  T
Q  265 ttgatgtttccagatttgttgagatttgctggtttcaag 303  Q
     ||||||||  || | ||||||| | ||| |||||||||    
T  2815042 ctgatgttttaaggtctgttgaggtctgcaggtttcaag 2815004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 303
Target Start/End: Complemental strand, 38011714 - 38011576
Alignment:
Q  169 aagggcctcgttactaatgtattggactcatc----gatctgagttcttacgcgtctgtttgaaatcatttgtgtttggagacttgacttcttcgactca 264  Q
    ||||| || |||||||| ||||||||||||||    ||||||| |||||||| ||  |||||||     |||||||||| ||| ||| | ||| |||||     
T  38011714 aagggtctggttactaacgtattggactcatccctcgatctgaattcttacgtgtaggtttgaagctggttgtgtttggtgacctgattgcttagactct 38011615  T
Q  265 ttgatgtttccagatttgttgagatttgctggtttcaag 303  Q
     |||||||||||| | ||||||||| ||| |||||||||    
T  38011614 ctgatgtttccaggtctgttgagatctgcaggtttcaag 38011576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 35740203 - 35740099
Alignment:
Q  199 tcgatctgagttcttacgcgtctgtttgaaatcatttgtgtttggagacttgacttcttcgactcattgatgtttccagatttgttgagatttgctggtt 298  Q
    |||||||||||||||| || |||||| | | ||  |||||||||| | | ||| | |||||| ||| |||||||| ||| | ||||||||||||| ||||    
T  35740203 tcgatctgagttcttatgcatctgttcgcattccgttgtgtttggtggcctgattgcttcgaatcactgatgttttcaggtctgttgagatttgcaggtt 35740104  T
Q  299 tcaag 303  Q
    |||||    
T  35740103 tcaag 35740099  T

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