View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9484_high_23 (Length: 285)
Name: NF9484_high_23
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 267
Target Start/End: Original strand, 3021113 - 3021366
Alignment:
| Q |
14 |
agaagagagcaggtagaagagtgctcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagt |
113 |
Q |
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| T |
3021113 |
agaagagagcaggtagaagagtgttcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagt |
3021212 |
T |
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| Q |
114 |
tcccaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcactt |
213 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3021213 |
tcctaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcactt |
3021312 |
T |
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| Q |
214 |
gctcttaaggggaaatcagcctgtcttaattttgctgactctgcatggcggttg |
267 |
Q |
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||||||| || |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3021313 |
actcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttg |
3021366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 267
Target Start/End: Original strand, 3037982 - 3038235
Alignment:
| Q |
14 |
agaagagagcaggtagaagagtgctcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagt |
113 |
Q |
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| T |
3037982 |
agaagagagcaggtagaagagtgttcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagt |
3038081 |
T |
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| Q |
114 |
tcccaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcactt |
213 |
Q |
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| T |
3038082 |
tcctaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcactt |
3038181 |
T |
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| Q |
214 |
gctcttaaggggaaatcagcctgtcttaattttgctgactctgcatggcggttg |
267 |
Q |
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||||||| || |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3038182 |
actcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttg |
3038235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 267
Target Start/End: Original strand, 3030327 - 3030580
Alignment:
| Q |
14 |
agaagagagcaggtagaagagtgctcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagt |
113 |
Q |
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||||||||||||| ||||||||| | ||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |
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| T |
3030327 |
agaagagagcagggagaagagtgtttaaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagatgagagt |
3030426 |
T |
|
| Q |
114 |
tcccaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcactt |
213 |
Q |
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||| || | || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3030427 |
tcctaatattaacgttaacaaaaacaataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcactt |
3030526 |
T |
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| Q |
214 |
gctcttaaggggaaatcagcctgtcttaattttgctgactctgcatggcggttg |
267 |
Q |
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||||||| || |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3030527 |
actcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttg |
3030580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 148 - 266
Target Start/End: Complemental strand, 42553805 - 42553687
Alignment:
| Q |
148 |
aggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcacttgctcttaaggggaaatcagcctgtcttaattttg |
247 |
Q |
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|||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| || ||| || |||||||| ||||||||||||| |
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| T |
42553805 |
aggatttggcttggaacatatccaacacctgagatggcagcacgtgcacacgacgttgccgcactggcacttcgcggtaaatcagcttgtcttaattttg |
42553706 |
T |
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| Q |
248 |
ctgactctgcatggcggtt |
266 |
Q |
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|||||||||| |||||||| |
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| T |
42553705 |
ctgactctgcgtggcggtt |
42553687 |
T |
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