View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9484_low_10 (Length: 436)
Name: NF9484_low_10
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 9e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 243 - 416
Target Start/End: Complemental strand, 12867161 - 12866988
Alignment:
| Q |
243 |
ccaaccattgtccacatccttaaaattacgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcctctggattatttttc |
342 |
Q |
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| T |
12867161 |
ccaaccattgtccacatccttaaaattatgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcttctggattgtttttc |
12867062 |
T |
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| Q |
343 |
atcttcttagaaactccagaatctggtgatgaagattttggccttttacctcgccgtgatgatggatccttaat |
416 |
Q |
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| T |
12867061 |
atcttcttagaaactccagaagacggtgatgaagattttggccttttacctcgccgtgatgaaggatccttaat |
12866988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 12867388 - 12867255
Alignment:
| Q |
19 |
tcatttggatcacacacacgaagaagttcttatcagaataaaacttgttcttgactttatcatacaaaacttggcttcgctccttaagatcatc------ |
112 |
Q |
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| T |
12867388 |
tcatttggatcacacac--gaagaagttcttatcagaatgaaacttgttcttcactttatcatacaaaacttggcttcgctccttaagatcatcacaact |
12867291 |
T |
|
| Q |
113 |
accactaattcctcctaagaaattgagtaattcacc |
148 |
Q |
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| T |
12867290 |
acaactagttcctgctaagaaattgagtaattcacc |
12867255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 245 - 356
Target Start/End: Complemental strand, 15134395 - 15134284
Alignment:
| Q |
245 |
aaccattgtccacatccttaaaattacgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcctctggattatttttcat |
344 |
Q |
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||||||||| || ||||||||||||| ||||| |||| || | ||||| | || |||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
15134395 |
aaccattgttcatatccttaaaattatgaaattttgcttgagattggaatattttcttctcatgcttagattctttttgttcctctgggttgattttcat |
15134296 |
T |
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| Q |
345 |
cttcttagaaac |
356 |
Q |
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||||||| |||| |
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| T |
15134295 |
cttcttacaaac |
15134284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 347
Target Start/End: Complemental strand, 49743020 - 49742916
Alignment:
| Q |
243 |
ccaaccattgtccacatccttaaaattacgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcctctggattatttttc |
342 |
Q |
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||||||||||||| |||||| || ||| |||| ||| | ||| ||||||||||||||||||||||||||| |||||||||||| | || ||| ||||| |
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| T |
49743020 |
ccaaccattgtccgtatccttgaagttaagaaaccttccttgttcttggacttttctcttctcatgcttaggttctttttgttcttttgaattgattttc |
49742921 |
T |
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| Q |
343 |
atctt |
347 |
Q |
| |
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||||| |
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| T |
49742920 |
atctt |
49742916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 49743193 - 49743134
Alignment:
| Q |
66 |
ttcttgactttatcatacaaaacttggcttcgctccttaagatcatcaccactaattcct |
125 |
Q |
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||||| ||||| || |||||||||| ||||| ||||||||||||||||| |||| ||||| |
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| T |
49743193 |
ttcttcactttgtcgtacaaaactttgcttctctccttaagatcatcacaactacttcct |
49743134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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