View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9484_low_13 (Length: 431)
Name: NF9484_low_13
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 178 - 412
Target Start/End: Original strand, 24334496 - 24334748
Alignment:
| Q |
178 |
gttagctgcaaggttttaaaaactggtccgcaacggtaattgtggttgtgatgtcgagtttttaatttatattttcaaaaccacatcagactgcaattgc |
277 |
Q |
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| T |
24334496 |
gttagctgcaaggttttaaaaaatggtccgcaaccataattgtggttgtgatgtgaagtttttaattcatattttcaaaaccacatcagactgcaattgc |
24334595 |
T |
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| Q |
278 |
agctgcatctattgtattcaaccaaaattctccgcaatatc------------------gccaacagcctcatcagaaacatttaaaacctgggatcagc |
359 |
Q |
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| T |
24334596 |
agctgcatcaattgtattcaacgaaaattctccgcaatatcaaggatcgtctatatacggccggtggcctcatcagaagcatttaaaacccgggatcagc |
24334695 |
T |
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| Q |
360 |
caattctagtagcatatcaaagaagaacgtgagaaacacaaagtgggccatac |
412 |
Q |
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| T |
24334696 |
caattctagtagcatatcaaagaagaacatgagaaacacaaagtgggccatac |
24334748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 24334275 - 24334402
Alignment:
| Q |
14 |
gcataggttatcaaagagtatatttcccactgctattctggaaattgttgagtcagcttacaaattgaaaataagctgagttatacacatggattctaca |
113 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24334275 |
gcataggttatcaaagagtatatttcccactgctaatctggaaattgttgagtcagcttacaaattgaaaataagctgagttatacacatggattctaca |
24334374 |
T |
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| Q |
114 |
agctgaaaataagctactaattcataat |
141 |
Q |
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| T |
24334375 |
agctgaaaataagctactaattcataat |
24334402 |
T |
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