View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9484_low_14 (Length: 430)

Name: NF9484_low_14
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9484_low_14
NF9484_low_14
[»] chr6 (24 HSPs)
chr6 (60-415)||(11122147-11122514)
chr6 (205-334)||(11124959-11125103)
chr6 (63-216)||(10567472-10567627)
chr6 (91-216)||(32629072-32629198)
chr6 (86-225)||(34829828-34829968)
chr6 (87-226)||(10567735-10567874)
chr6 (104-226)||(17342887-17343010)
chr6 (122-224)||(28613476-28613578)
chr6 (114-226)||(6611939-6612051)
chr6 (90-226)||(22793300-22793437)
chr6 (117-217)||(29674856-29674956)
chr6 (66-169)||(29674933-29675038)
chr6 (87-201)||(32629324-32629439)
chr6 (151-224)||(6209834-6209907)
chr6 (151-224)||(22793606-22793679)
chr6 (146-226)||(7213357-7213435)
chr6 (148-224)||(34829582-34829658)
chr6 (83-200)||(6611636-6611754)
chr6 (65-160)||(22793547-22793644)
chr6 (122-203)||(28705819-28705900)
chr6 (123-203)||(13498388-13498468)
chr6 (158-234)||(28613186-28613262)
chr6 (63-155)||(28613236-28613330)
chr6 (160-226)||(29675189-29675255)
[»] chr8 (22 HSPs)
chr8 (83-225)||(4623069-4623212)
chr8 (87-226)||(34439497-34439637)
chr8 (63-224)||(18548539-18548702)
chr8 (86-224)||(34687755-34687894)
chr8 (104-225)||(9710216-9710338)
chr8 (63-225)||(16049480-16049644)
chr8 (64-226)||(34439221-34439385)
chr8 (63-226)||(7644779-7644943)
chr8 (87-224)||(16049753-16049889)
chr8 (101-226)||(18429611-18429736)
chr8 (89-225)||(7645059-7645196)
chr8 (122-226)||(4623410-4623514)
chr8 (83-226)||(25879567-25879710)
chr8 (88-221)||(18935323-18935457)
chr8 (84-224)||(7535524-7535665)
chr8 (87-234)||(18548807-18548955)
chr8 (122-225)||(21445985-21446086)
chr8 (83-178)||(4623342-4623437)
chr8 (125-226)||(18935052-18935153)
chr8 (163-226)||(7535299-7535362)
chr8 (151-226)||(18429441-18429516)
chr8 (133-173)||(165006-165046)
[»] chr1 (32 HSPs)
chr1 (87-225)||(143087-143226)
chr1 (63-224)||(22792526-22792689)
chr1 (83-226)||(19987333-19987477)
chr1 (87-238)||(8718470-8718622)
chr1 (87-225)||(14420053-14420192)
chr1 (84-224)||(34518225-34518366)
chr1 (83-224)||(3072979-3073121)
chr1 (83-235)||(31872869-31873021)
chr1 (83-226)||(42604629-42604773)
chr1 (83-225)||(48171706-48171849)
chr1 (87-225)||(37245637-37245776)
chr1 (63-224)||(34517965-34518127)
chr1 (63-231)||(35795307-35795477)
chr1 (82-224)||(33460159-33460297)
chr1 (63-226)||(18519316-18519481)
chr1 (114-231)||(33459889-33460006)
chr1 (86-225)||(48171442-48171574)
chr1 (88-173)||(3075195-3075281)
chr1 (86-226)||(42604902-42605043)
chr1 (87-225)||(35795590-35795729)
chr1 (83-225)||(142811-142954)
chr1 (126-225)||(22792290-22792389)
chr1 (86-155)||(31872749-31872819)
chr1 (87-155)||(18519592-18519661)
chr1 (122-219)||(30971829-30971926)
chr1 (151-224)||(31872709-31872782)
chr1 (151-224)||(36783416-36783489)
chr1 (151-226)||(25622607-25622682)
chr1 (87-152)||(25622652-25622718)
chr1 (63-168)||(30971909-30972014)
chr1 (176-226)||(37245932-37245982)
chr1 (158-203)||(14419842-14419887)
[»] chr2 (29 HSPs)
chr2 (87-228)||(29526867-29527009)
chr2 (90-224)||(32622465-32622600)
chr2 (84-232)||(13490167-13490316)
chr2 (115-226)||(13140289-13140400)
chr2 (88-226)||(27956724-27956863)
chr2 (63-226)||(1352831-1352996)
chr2 (87-226)||(44995333-44995472)
chr2 (122-224)||(6795481-6795583)
chr2 (63-234)||(29526587-29526759)
chr2 (128-226)||(39060307-39060405)
chr2 (63-223)||(13490422-13490583)
chr2 (63-226)||(43513807-43513972)
chr2 (83-226)||(3217284-3217428)
chr2 (83-226)||(43971782-43971927)
chr2 (82-173)||(15988518-15988610)
chr2 (122-202)||(24284109-24284189)
chr2 (151-226)||(13140601-13140676)
chr2 (63-224)||(24015813-24015975)
chr2 (122-228)||(24065870-24065977)
chr2 (151-222)||(26845520-26845591)
chr2 (63-216)||(27956969-27957124)
chr2 (83-200)||(14473799-14473917)
chr2 (151-224)||(1353141-1353214)
chr2 (157-226)||(32622217-32622286)
chr2 (83-173)||(3221096-3221187)
chr2 (86-223)||(38262804-38262942)
chr2 (151-223)||(36006247-36006319)
chr2 (122-213)||(37762316-37762407)
chr2 (182-226)||(43971652-43971696)
[»] scaffold0548 (1 HSPs)
scaffold0548 (83-226)||(3301-3445)
[»] chr4 (35 HSPs)
chr4 (83-226)||(11306523-11306667)
chr4 (63-225)||(45505308-45505472)
chr4 (83-226)||(49984068-49984212)
chr4 (83-226)||(4416475-4416619)
chr4 (87-226)||(18414960-18415100)
chr4 (63-224)||(4416726-4416889)
chr4 (63-226)||(17524203-17524368)
chr4 (83-226)||(45505058-45505202)
chr4 (83-226)||(31141678-31141822)
chr4 (63-225)||(43913394-43913557)
chr4 (91-216)||(36752868-36752994)
chr4 (87-226)||(37724438-37724578)
chr4 (87-211)||(18414736-18414861)
chr4 (63-226)||(48845711-48845876)
chr4 (87-222)||(4592629-4592765)
chr4 (63-224)||(20269113-20269276)
chr4 (83-169)||(20870883-20870970)
chr4 (87-225)||(48845987-48846126)
chr4 (101-225)||(46397306-46397431)
chr4 (86-226)||(49983792-49983933)
chr4 (83-226)||(17524473-17524617)
chr4 (99-226)||(48658318-48658446)
chr4 (101-203)||(16399203-16399306)
chr4 (151-226)||(45170854-45170929)
chr4 (91-226)||(2516467-2516603)
chr4 (83-225)||(52485611-52485755)
chr4 (136-203)||(4592400-4592467)
chr4 (151-225)||(24671952-24672026)
chr4 (114-224)||(52485343-52485453)
chr4 (63-145)||(37724673-37724757)
chr4 (119-222)||(12292892-12292995)
chr4 (87-155)||(45170696-45170765)
chr4 (63-140)||(20871080-20871159)
chr4 (151-226)||(20871141-20871215)
chr4 (151-226)||(37724734-37724809)
[»] chr3 (12 HSPs)
chr3 (87-224)||(54341204-54341342)
chr3 (63-226)||(37285547-37285712)
chr3 (87-226)||(33419815-33419955)
chr3 (88-238)||(51388033-51388185)
chr3 (63-226)||(30547739-30547902)
chr3 (63-173)||(33419592-33419704)
chr3 (83-226)||(48618751-48618895)
chr3 (90-203)||(48618502-48618616)
chr3 (86-203)||(30548004-30548124)
chr3 (133-226)||(19541154-19541247)
chr3 (151-225)||(37285886-37285960)
chr3 (123-224)||(54111417-54111518)
[»] scaffold0056 (2 HSPs)
scaffold0056 (87-226)||(62997-63137)
scaffold0056 (63-226)||(62725-62890)
[»] chr7 (18 HSPs)
chr7 (83-226)||(22566302-22566444)
chr7 (83-234)||(34535953-34536105)
chr7 (87-226)||(36469808-36469947)
chr7 (63-224)||(6376608-6376771)
chr7 (63-224)||(34535695-34535855)
chr7 (83-201)||(24185693-24185811)
chr7 (82-217)||(6376374-6376510)
chr7 (87-225)||(48461793-48461931)
chr7 (122-224)||(10017903-10018005)
chr7 (114-216)||(7460580-7460682)
chr7 (157-224)||(7460886-7460953)
chr7 (151-224)||(43511189-43511262)
chr7 (82-173)||(8560681-8560773)
chr7 (87-229)||(48462066-48462210)
chr7 (63-155)||(7460819-7460913)
chr7 (122-224)||(9997944-9998046)
chr7 (157-226)||(17813975-17814044)
chr7 (151-226)||(24188208-24188283)
[»] chr5 (8 HSPs)
chr5 (63-224)||(16642751-16642914)
chr5 (82-226)||(33992604-33992749)
chr5 (87-226)||(33992334-33992474)
chr5 (122-173)||(32291104-32291155)
chr5 (86-224)||(19328409-19328548)
chr5 (91-224)||(25508082-25508216)
chr5 (151-224)||(16643055-16643128)
chr5 (114-226)||(19935433-19935544)
[»] scaffold0400 (2 HSPs)
scaffold0400 (128-226)||(9888-9986)
scaffold0400 (135-226)||(9578-9669)
[»] scaffold0365 (2 HSPs)
scaffold0365 (128-226)||(10531-10629)
scaffold0365 (135-226)||(10221-10312)
[»] scaffold0015 (1 HSPs)
scaffold0015 (157-226)||(47420-47489)
[»] scaffold0074 (1 HSPs)
scaffold0074 (91-171)||(23903-23984)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 60 - 415
Target Start/End: Original strand, 11122147 - 11122514
Alignment:
Q  60 ataaaactcaatatcatgttgt-aaagggactaactaattccaacgtgagtaacgtttggacgaacttgaaacctttaaaacgtaagagactaacttcaa 158  Q
    ||||||||||||||| | |||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  11122147 ataaaactcaatatctttttgtcaaagagactaactaattccaacgtgagtaacgtttggacgaacttgaatcctttaaaacgtaagatactaacttcaa 11122246  T
Q  159 acttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagctttattttaattgtgttcttcttttcagataa 258  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11122247 acttttaaaacataaatgaccaacttacaacctaaaataaacataagggatcaaacatacaattaagccttattttaattgtgttcttcttttcagataa 11122346  T
Q  259 ttatatttgtggcgatccaaagtatacctgtggcggtaaaaaagattttatcgctttttaatgatttttatcaa------------ttcttagttgttat 346  Q
    ||||||||||||| |||||||| |||| | ||| ||||||||| ||||||||||||||||||||||||||||||            ||||||||||||||    
T  11122347 ttatatttgtggcaatccaaaggatacttatggtggtaaaaaatattttatcgctttttaatgatttttatcaattcttttatggcttcttagttgttat 11122446  T
Q  347 aatctgtatctatnnnnnnnnntgtccataaatgatattgagtgtaatagatgagaaagatgtatacat 415  Q
    ||| |||||||||          ||||||||||||||||||||||||||||||||||||||||||||||    
T  11122447 aatatgtatctataaaaaaaaa-gtccataaatgatattgagtgtaatagatgagaaagatgtatacat 11122514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 205 - 334
Target Start/End: Original strand, 11124959 - 11125103
Alignment:
Q  205 gggatcaaacatacaattaagctttattttaattgtgttcttcttttcagataattatatttgtggcgatccaaagtatacctg---------------t 289  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||               |    
T  11124959 gggatcaaacatacaattaagccttattttaattgtgttcttcttttcagataattatatttgtggcaatccatagtatacttgttaaaaaaaaaatgct 11125058  T
Q  290 ggcggtaaaaaagattttatcgctttttaatgatttttatcaatt 334  Q
     | ||||||||||||||||||||||||||||||||||||||||||    
T  11125059 tgtggtaaaaaagattttatcgctttttaatgatttttatcaatt 11125103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 63 - 216
Target Start/End: Complemental strand, 10567627 - 10567472
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgtttgga-cgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||||||||| ||| ||| |||||||| ||| ||| ||||||||||||| || | |||||||||| ||||||||||||| ||| ||||| ||||    
T  10567627 aaactcaatatcatgtcgtagaagagactaacttatttcaatgtgagtaacgttttgaaccaacttgaaacttttaaaacgtaagggaccaacttgaaac 10567528  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacat 216  Q
    ||||||||| |||  |||||||||  || |||||||||||||| ||||||||||||    
T  10567527 ttttaaaacgtaagggaccaatttgaaaactaaaataaacataagggatcaaacat 10567472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 32629198 - 32629072
Alignment:
Q  91 aactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaac 189  Q
    |||| ||| ||||||||||||||||| |||| |||||||||||||||||| ||||| ||| ||||| ||| |||||||||||||| | | || ||| |||    
T  32629198 aacttatttcaacgtgagtaacgttttggactaacttgaaacctttaaaatgtaagggaccaacttaaaatttttaaaacataaaggtctaacttaaaac 32629099  T
Q  190 ctaaaataaacatatgggatcaaacat 216  Q
    |||||||||||||| ||||||||||||    
T  32629098 ctaaaataaacataagggatcaaacat 32629072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 34829828 - 34829968
Alignment:
Q  86 ggactaactaattccaacgtgagtaacgtttgga-cgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattt 184  Q
    ||||||||| ||| |||  || ||||||||| || | |||||||||||||||||||||||| ||| ||| | |||||||||||||||||  |||||| ||    
T  34829828 ggactaacttatttcaatatgggtaacgttttgaaccaacttgaaacctttaaaacgtaagggaccaacatgaaacttttaaaacataagagaccaactt 34829927  T
Q  185 acaacctaaaataaacatatgggatcaaacatacaattaag 225  Q
    | ||||||||||||||||| | |||||||||| ||||||||    
T  34829928 aaaacctaaaataaacataagagatcaaacatgcaattaag 34829968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 10567735 - 10567874
Alignment:
Q  87 gactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||||| |||||||||||||||| |||| |||| |||||||||| ||||||||||||| ||| ||||| ||||| ||||||||| || || ||||||     
T  10567735 gactaacttattccaacgtgagtaatgttttggaccaacttgaaacttttaaaacgtaagggaccaacttgaaactcttaaaacatgaa-gatcaatttg 10567833  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     ||  ||||||||||||| ||||||||| || |||||||||    
T  10567834 aaaattaaaataaacataagggatcaaatatgcaattaagc 10567874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 104 - 226
Target Start/End: Complemental strand, 17343010 - 17342887
Alignment:
Q  104 gtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacat 202  Q
    ||||||||||||| |||| || ||||||| |||||||||||| |||| ||||| ||| |||||||||||||  |||||| ||  ||||||||||||||||    
T  17343010 gtgagtaacgttttggaccaatttgaaacttttaaaacgtaaaagaccaacttgaaatttttaaaacataagggaccaacttgaaacctaaaataaacat 17342911  T
Q  203 atgggatcaaacatacaattaagc 226  Q
    | ||||| |||||| |||||||||    
T  17342910 acgggattaaacatgcaattaagc 17342887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 28613476 - 28613578
Alignment:
Q  122 aacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaat 221  Q
    |||||||||| ||||||||||||| ||| ||||| ||| ||||||||||  || |||||||||| ||  ||||||||||||| |||||||||||||||||    
T  28613476 aacttgaaacttttaaaacgtaagggaccaacttgaaatttttaaaacaagaaggaccaatttaaaaattaaaataaacataagggatcaaacatacaat 28613575  T
Q  222 taa 224  Q
    |||    
T  28613576 taa 28613578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 114 - 226
Target Start/End: Original strand, 6611939 - 6612051
Alignment:
Q  114 tttggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaa 213  Q
    ||||||| |||||||||| ||||||||||||| ||| ||||| |||||||||||||| ||  || ||| ||| || |||||||||||||| |  ||||||    
T  6611939 tttggaccaacttgaaacatttaaaacgtaagggaccaacttgaaacttttaaaacacaagggatcaacttaaaatctaaaataaacataagacatcaaa 6612038  T
Q  214 catacaattaagc 226  Q
    ||| |||||||||    
T  6612039 catgcaattaagc 6612051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 22793437 - 22793300
Alignment:
Q  90 taactaattccaacgtgagtaacgtt-tggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaa 188  Q
    ||||| ||||||| |||| ||||||| |||| ||| || |||| |||||||| |||| ||| ||||| |||||||||||||||||  |||||| ||  ||    
T  22793437 taacttattccaaggtgactaacgttgtggatgaaattaaaacttttaaaacataagggaccaacttgaaacttttaaaacataagggaccaacttgaaa 22793338  T
Q  189 cctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    ||||||||||||||| |||  |||| || |||||||||    
T  22793337 cctaaaataaacataaggggccaaatatccaattaagc 22793300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 29674956 - 29674856
Alignment:
Q  117 ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacat 216  Q
    |||| |||||||||| |||||||||||||  || ||||| |||||||||||| ||||  |||||| ||  |||||||| |||||||| ||||||||||||    
T  29674956 ggaccaacttgaaacttttaaaacgtaaggaaccaacttgaaacttttaaaatataagggaccaacttgaaacctaaattaaacataagggatcaaacat 29674857  T
Q  217 a 217  Q
    |    
T  29674856 a 29674856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 169
Target Start/End: Complemental strand, 29675038 - 29674933
Alignment:
Q  66 ctcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttt 163  Q
    ||||||||||||||||  |||||||||| | |||||||||||||| | |||| |||  |||||||||| |||||||| |||| ||| ||||| |||||||    
T  29675038 ctcaatatcatgttgtggaagggactaatttattccaacgtgagtcatgttttggatcaacttgaaacttttaaaacttaagggaccaacttgaaacttt 29674939  T
Q  164 taaaac 169  Q
    ||||||    
T  29674938 taaaac 29674933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 32629324 - 32629439
Alignment:
Q  87 gactaactaattccaacgtgagtaacgtttgga-cgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||||| ||| ||| ||| ||||||||| || |||||||||||  |||||||  |||| ||| ||||  |||||||||||||||||| |||||| |||    
T  32629324 gactaacttattacaatgtgggtaacgttttgaacgaacttgaaatttttaaaatataagggaccaactcaaaacttttaaaacataaaagaccaactta 32629423  T
Q  186 caacctaaaataaaca 201  Q
     |||| ||||||||||    
T  32629424 aaaccaaaaataaaca 32629439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 6209907 - 6209834
Alignment:
Q  151 aacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    ||||| |||||||||||||||||||||| || ||  |||||||||||||| || |||| |||||||| ||||||    
T  6209907 aacttgaaacttttaaaacataaatgacaaaattgaaacctaaaataaacgtaagggaccaaacatataattaa 6209834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 22793606 - 22793679
Alignment:
Q  151 aacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    ||||| ||||||||||||| |||  |||||| ||  ||||||||||||||||| |||||||||||| |||||||    
T  22793606 aacttgaaacttttaaaacgtaagggaccaacttgaaacctaaaataaacataagggatcaaacatgcaattaa 22793679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 7213357 - 7213435
Alignment:
Q  146 agactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    |||||||||| ||||||||||||||||||  ||||||||| || ||||||||| ||||  ||||||||||| |||||||||    
T  7213357 agactaacttaaaacttttaaaacataaa-aaccaatttaaaaactaaaataagcata-aggatcaaacatgcaattaagc 7213435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 34829658 - 34829582
Alignment:
Q  148 actaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    |||||||| ||||||||||||||||| | ||||| ||| ||| |||||||||||||  ||||||||| | |||||||    
T  34829658 actaacttgaaacttttaaaacataagtaaccaacttaaaacttaaaataaacataaaggatcaaacctgcaattaa 34829582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 6611754 - 6611636
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgtttgga-cgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||||| |||||||   ||| ||||||| || | |||||||||| |||||||| | || ||| ||||| |||||||||||||||||  ||||||    
T  6611754 aagggactaacttattccaattagagcaacgttttgaaccaacttgaaacttttaaaacatgagggaccaacttgaaacttttaaaacataagggaccaa 6611655  T
Q  182 tttacaacctaaaataaac 200  Q
      |  ||||||||||||||    
T  6611654 cctgaaacctaaaataaac 6611636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 22793547 - 22793644
Alignment:
Q  65 actcaatatcatgttg-taaagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||| ||| | ||||||| |||||| |||||||  |||||||| ||| |||| |||||||||| ||||||||||||| ||| ||||| ||||    
T  22793547 actcaatatcctgtcgctaaaggggctaacttattccaatatgagtaacattttggacaaacttgaaacttttaaaacgtaagggaccaacttgaaac 22793644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 28705819 - 28705900
Alignment:
Q  122 aacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacata 203  Q
    |||||||||  |||||||| |||| ||||||||| ||| |||||||||| ||  |||||| ||| ||| |||||||||||||    
T  28705819 aacttgaaagttttaaaacataagggactaacttgaaagttttaaaacaaaagggaccaacttaaaacttaaaataaacata 28705900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 13498388 - 13498468
Alignment:
Q  123 acttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacata 203  Q
    ||||||||| ||||| || |||||||| ||| | |||||||||||||||||  |||| | ||| |||||||||||| ||||    
T  13498388 acttgaaacttttaatacataagagaccaacataaaacttttaaaacataagagaccgacttaaaacctaaaataagcata 13498468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 28613262 - 28613186
Alignment:
Q  158 aacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagctttatttt 234  Q
    |||||||||||| |||  |||||| ||| || |||||||||| ||| |||||||||||| ||| ||||| |||||||    
T  28613262 aacttttaaaacgtaagggaccaacttaaaaactaaaataaatataagggatcaaacatgcaactaagccttatttt 28613186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 28613330 - 28613236
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaactt 155  Q
    |||||||||||||||| ||  ||| |||||||| |||||||  |||||||||||| |||| |||||  ||| ||||||||||||| ||| |||||    
T  28613330 aaactcaatatcatgtcgtggaagagactaacttattccaatatgagtaacgttttggaccaacttacaacttttaaaacgtaagggaccaactt 28613236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 29675189 - 29675255
Alignment:
Q  160 cttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    |||||||||||| |  |||||| ||| |||||||||||||||||  | | |||||||||||||||||    
T  29675189 cttttaaaacatgagagaccaacttaaaacctaaaataaacataaagcaccaaacatacaattaagc 29675255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 83 - 225
Target Start/End: Complemental strand, 4623212 - 4623069
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||||| ||| ||| ||||||||| ||| |||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||  || |||    
T  4623212 aagggactaacttatttcaatgtgagtaacattttggaccaacttgaaacctttaaaacgtaagagaccaacttaaaacttttaaaacataagggatcaa 4623113  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaag 225  Q
    |||| || |||||||||||||| |||||||||||| ||||||||    
T  4623112 tttaaaaactaaaataaacataagggatcaaacatgcaattaag 4623069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 34439497 - 34439637
Alignment:
Q  87 gactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||||| | ||||||||||||||||||| |||| ||||| |||| ||||||||||||| ||| ||||| ||||||||||||||| || ||||||||||    
T  34439497 gactaacttaatccaacgtgagtaacgttttggaccaactttaaacttttaaaacgtaagggaccaacttgaaacttttaaaacatgaaggaccaattta 34439596  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     || |||||||||||||| |||||||||||| |||||||||    
T  34439597 aaaactaaaataaacataagggatcaaacatgcaattaagc 34439637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 63 - 224
Target Start/End: Complemental strand, 18548702 - 18548539
Alignment:
Q  63 aaactcaatatcatgttgt-aaagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||||||||| |  ||||||||||||| ||| |||| ||||||| |||| |||| ||||| ||||||||||||||||||| || ||||| ||||    
T  18548702 aaactcaatatcatgtcgcgaaagggactaacttatttcaacttgagtaatgttttggaccaacttaaaacctttaaaacgtaagaaaccaacttaaaac 18548603  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    ||||||||||||||  ||||| ||| ||||||||||||||||| || ||||||||| |||||||    
T  18548602 ttttaaaacataaagtaccaacttaaaacctaaaataaacataaggaatcaaacatgcaattaa 18548539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 34687894 - 34687755
Alignment:
Q  86 ggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattt 184  Q
    ||||||||| |||| || ||||||||||||| |||| |||||||||| |||||||| |||| ||| ||||| ||| ||||||||||||||  ||||| ||    
T  34687894 ggactaacttattctaaagtgagtaacgttttggaccaacttgaaacttttaaaacataagggaccaacttgaaatttttaaaacataaagaaccaactt 34687795  T
Q  185 acaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    | ||||||||||||||||| ||| |||||||| |||||||    
T  34687794 aaaacctaaaataaacataaggggtcaaacatgcaattaa 34687755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 9710338 - 9710216
Alignment:
Q  104 gtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacat 202  Q
    ||||||||||||| |||| |||||||||| ||||||| ||||| ||| ||||| |||||||||||||||||  |||||| ||| || |||||||||||||    
T  9710338 gtgagtaacgttttggaccaacttgaaacttttaaaatgtaagggaccaacttgaaacttttaaaacataagggaccaacttaaaaactaaaataaacat 9710239  T
Q  203 atgggatcaaacatacaattaag 225  Q
    | |||||||||||| ||||||||    
T  9710238 aagggatcaaacatgcaattaag 9710216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 63 - 225
Target Start/End: Complemental strand, 16049644 - 16049480
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||||||||| | | |||||||||||| ||||||| ||| ||||||||| |||| |||||||||  ||||||||| ||| ||| ||||| ||||    
T  16049644 aaactcaatatcatgtcgcataagggactaacttattccaatgtgggtaacgttttggaccaacttgaaatttttaaaacgaaagggaccaacttaaaac 16049545  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaag 225  Q
    |||||||||||||   ||||| ||| || | |||||||||||| |||||| ||||| ||||||||    
T  16049544 ttttaaaacataaggaaccaaattaaaaaccaaaataaacatacgggatcgaacatgcaattaag 16049480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 34439385 - 34439221
Alignment:
Q  64 aactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaact 161  Q
    ||||||||||||||| ||  ||| |||||||| ||| |||||||| |||||||| |||| |||||||| | ||||||||||||| ||| ||||| || ||    
T  34439385 aactcaatatcatgtcgtggaagagactaacttattgcaacgtgaataacgttttggaccaacttgaatcttttaaaacgtaagggaccaacttgaatct 34439286  T
Q  162 tttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    |||||||| |||   ||||| ||| || |||||||||||||| | ||||||||||||||||||||    
T  34439285 tttaaaacctaacgaaccaacttaaaaactaaaataaacataagagatcaaacatacaattaagc 34439221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 7644943 - 7644779
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    ||||||||||||||||||   |||||||||||| |||||||  ||||||| |||| |||| ||||| |||  ||||||||||||| ||  ||||| ||||    
T  7644943 aaactcaatatcatgttgcggaagggactaacttattccaatctgagtaatgtttcggaccaacttaaaatttttaaaacgtaagggatcaacttgaaac 7644844  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    |||||||||||||  |||||| ||| || ||||||||||||||  ||||||||||| |||||||||    
T  7644843 ttttaaaacataagggaccaacttaaaaactaaaataaacata-aggatcaaacatgcaattaagc 7644779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 16049753 - 16049889
Alignment:
Q  87 gactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||| | ||||||||||||||||| ||| |||| |||||||||| ||||||||||||||    ||||| |||||||||||||||||  |||||| ||     
T  16049753 gactaatttattccaacgtgagtaacattttggaccaacttgaaacttttaaaacgtaagatc--aacttaaaacttttaaaacataagggaccaacttg 16049850  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaa 224  Q
     || |||||||||||||| |||||||||||| |||||||    
T  16049851 aaaactaaaataaacataagggatcaaacatgcaattaa 16049889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 101 - 226
Target Start/End: Original strand, 18429611 - 18429736
Alignment:
Q  101 aacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaa 199  Q
    |||||||||||||||| |||| ||||| |||| ||||||||||||| ||| ||||| ||||||||||||||| || |||||||||  || || |||||||    
T  18429611 aacgtgagtaacgttttggaccaacttaaaacttttaaaacgtaagggaccaactttaaacttttaaaacatgaaagaccaatttgaaaact-aaataaa 18429709  T
Q  200 catatgggatcaaacatacaattaagc 226  Q
    |||| ||||||||||||  ||||||||    
T  18429710 cataagggatcaaacatgaaattaagc 18429736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 7645059 - 7645196
Alignment:
Q  89 ctaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttaca 187  Q
    |||||| ||| ||||||||||||||||| |||  |||||||||| ||||||| ||||| ||  ||||| |||||||||||| ||||| ||| || ||| |    
T  7645059 ctaacttattgcaacgtgagtaacgttttggatcaacttgaaacttttaaaatgtaagggatcaacttgaaacttttaaaatataaaggactaacttaaa 7645158  T
Q  188 acctaaaataaacatatgggatcaaacatacaattaag 225  Q
    | |||||||||||||| |||||||||||| | ||||||    
T  7645159 aactaaaataaacataagggatcaaacatgcgattaag 7645196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 4623410 - 4623514
Alignment:
Q  122 aacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaat 221  Q
    |||||||||| |||||||| |||| ||||| ||| |||||||||||||||||| || ||| ||  || |||||||||||||| |||||||||||| ||||    
T  4623410 aacttgaaacttttaaaacataagtgactatcttgaaacttttaaaacataaaggatcaacttgaaaactaaaataaacataagggatcaaacatgcaat 4623509  T
Q  222 taagc 226  Q
    |||||    
T  4623510 taagc 4623514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 83 - 226
Target Start/End: Complemental strand, 25879710 - 25879567
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgtttgga-cgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||||| ||||||||||| ||||||||| || | ||||||||||  |||||||||||| ||| || || |||||||||||||||||  ||||||    
T  25879710 aagggactaacttattccaacgtgggtaacgttttgaactaacttgaaactattaaaacgtaagtgaccaatttaaaacttttaaaacataatggaccaa 25879611  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     ||| || | ||||||||||||   |||||||||| |||||||||    
T  25879610 cttaaaaacaaaaataaacata-aagatcaaacatgcaattaagc 25879567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 18935323 - 18935457
Alignment:
Q  88 actaactaattccaacgtgagtaacgtttgg-acgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttac 186  Q
    ||||||| ||||||| |  |||||||||||| || |||||||||| ||||||||  ||||||| ||||| |||||||||||||||||  ||||||  |      
T  18935323 actaacttattccaatgaaagtaacgtttgggaccaacttgaaacttttaaaacacaagagaccaacttgaaacttttaaaacataagggaccaacatga 18935422  T
Q  187 aacctaaaataaacatatgggatcaaacatacaat 221  Q
    ||||||||||||||||| |||| ||||||| ||||    
T  18935423 aacctaaaataaacataagggaccaaacatgcaat 18935457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 84 - 224
Target Start/End: Original strand, 7535524 - 7535665
Alignment:
Q  84 agggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaat 182  Q
    ||||||||||| ||| ||||||||||||||||| |||| ||||| |||||| ||||| ||||| ||| ||||| || ||||||||||||||  | ||||     
T  7535524 agggactaacttatttcaacgtgagtaacgttttggaccaacttaaaacctgtaaaatgtaagggaccaacttgaatcttttaaaacataaggggccaac 7535623  T
Q  183 ttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    ||  |||| |||||||| ||| || ||||||||| |||||||    
T  7535624 ttgaaaccaaaaataaatataaggaatcaaacatgcaattaa 7535665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 234
Target Start/End: Original strand, 18548807 - 18548955
Alignment:
Q  87 gactaactaattccaacgtgagtaacgtt-tggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||||| |||||||  |||| |||||| || || || ||| ||| || |||||||||||||| ||||  |||||||||||| ||||  |||||| |||    
T  18548807 gactaacttattccaatttgagcaacgttgtgaaccaatttgcaactttgaaaacgtaagagacaaactcaaaacttttaaaatataagagaccaactta 18548906  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaagctttatttt 234  Q
     ||||||||||||||| | || | |||||||| |||||| |||||||||    
T  18548907 aaacctaaaataaacacagggaaccaaacatataattaaactttatttt 18548955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 225
Target Start/End: Complemental strand, 21446086 - 21445985
Alignment:
Q  122 aacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaat 221  Q
    |||||||||||||||||||||||||||| |||   ||||||||||||| |||  |||||| ||| || |||||||||| ||| |||| ||||||| ||||    
T  21446086 aacttgaaacctttaaaacgtaagagaccaaca--aaacttttaaaacgtaagggaccaacttaaaatctaaaataaatataagggaccaaacatgcaat 21445989  T
Q  222 taag 225  Q
    ||||    
T  21445988 taag 21445985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 4623342 - 4623437
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgtttggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgac 178  Q
    |||||||||||| ||| ||||||||  |   ||| ||| |||||||||| |||||||| |||| ||| ||||| ||||||||||||||||| ||||    
T  4623342 aagggactaacttatttcaacgtgaaaatgtttttgaccaacttgaaacttttaaaacataagtgaccaacttgaaacttttaaaacataagtgac 4623437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 18935153 - 18935052
Alignment:
Q  125 ttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    ||||||| |||| ||| |||| ||| ||||| ||| |||||||||| ||  |||||| ||| ||| ||||||||||||| | || ||||||| |||||||    
T  18935153 ttgaaacttttataacataagggaccaacttaaaagttttaaaacaaaagggaccaacttaaaacttaaaataaacataagagaccaaacatgcaattaa 18935054  T
Q  225 gc 226  Q
    ||    
T  18935053 gc 18935052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 7535362 - 7535299
Alignment:
Q  163 ttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    |||||||||||| |||||| ||| ||| ||||||||||||| | || ||||||| |||||||||    
T  7535362 ttaaaacataaaagaccaacttaaaacgtaaaataaacataagagaccaaacatgcaattaagc 7535299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 18429516 - 18429441
Alignment:
Q  151 aacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    ||||| |||||||||||| ||||  |||||| ||  || |||||||||||||| | |||||||||| |||||||||    
T  18429516 aacttgaaacttttaaaatataagggaccaacttgaaaactaaaataaacataagagatcaaacatgcaattaagc 18429441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 165046 - 165006
Alignment:
Q  133 tttaaaacgtaagagactaacttcaaacttttaaaacataa 173  Q
    |||||||| |||||||| ||||| |||||||||||||||||    
T  165046 tttaaaacataagagacaaacttaaaacttttaaaacataa 165006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 225
Target Start/End: Original strand, 143087 - 143226
Alignment:
Q  87 gactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||||| ||| ||||||||||||||||| |||| |||||||||| ||||||||||||| ||| ||||| ||||||||||| |||| | |||||| |||    
T  143087 gactaacttattgcaacgtgagtaacgttttggaccaacttgaaacttttaaaacgtaagggaccaacttaaaacttttaaagcatataggaccaactta 143186  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaag 225  Q
     ||||||||||||||||| |||||||||||||||||||||    
T  143187 aaacctaaaataaacataagggatcaaacatacaattaag 143226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 63 - 224
Target Start/End: Original strand, 22792526 - 22792689
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||| ||||||||| | | ||| |||||||| ||||||| ||||||||||||| |||| |||||||||||||| ||||||||| ||| ||||| ||||    
T  22792526 aaactcgatatcatgtcgcagaagcgactaacttattccaatgtgagtaacgttttggactaacttgaaacctttcaaacgtaagggaccaacttaaaac 22792625  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    ||||||||| |||  |||||| ||| |||||||||||||||||||||| |||||||||||||||    
T  22792626 ttttaaaacttaagggaccaacttaaaacctaaaataaacatatgggaccaaacatacaattaa 22792689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 83 - 226
Target Start/End: Complemental strand, 19987477 - 19987333
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||||| ||||||| ||||||||||||| |||  |||||||||| |||||||| |||| ||| ||||| |||||||||||||||||| || |||    
T  19987477 aagggactaacttattccaatgtgagtaacgttttggatcaacttgaaacttttaaaacttaagggaccaacttaaaacttttaaaacataaaggaacaa 19987378  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     ||| || ||||||||||||||||||||||||||| |||||||||    
T  19987377 cttaaaaactaaaataaacatatgggatcaaacatgcaattaagc 19987333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 87 - 238
Target Start/End: Original strand, 8718470 - 8718622
Alignment:
Q  87 gactaactaattccaacgtgagtaacgtttgga-cgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||||| ||||||| ||||||||||||| || | |||||||||  |||||||| |||| ||| ||||| |||||||||||| ||||  |||||| |||    
T  8718470 gactaacttattccaatgtgagtaacgttttgaaccaacttgaaaattttaaaacataagggacaaacttgaaacttttaaaaaataagggaccaactta 8718569  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaagctttattttaatt 238  Q
     |||||||||||||||||||||||||||||| ||||||||| |||||| ||||    
T  8718570 aaacctaaaataaacatatgggatcaaacatgcaattaagccttatttaaatt 8718622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 87 - 225
Target Start/End: Original strand, 14420053 - 14420192
Alignment:
Q  87 gactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||||| ||||||||||||||||||||| |||| ||||||||| ||||||||| |||  || |||||| |||||||||||||||||  ||| ||||||    
T  14420053 gactaacttattccaacgtgagtaacgttttggaccaacttgaaatctttaaaacataattgattaacttgaaacttttaaaacataatagactaattta 14420152  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaag 225  Q
     ||||||||||||||||| || ||||||||| ||||||||    
T  14420153 aaacctaaaataaacataaggaatcaaacatgcaattaag 14420192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 84 - 224
Target Start/End: Original strand, 34518225 - 34518366
Alignment:
Q  84 agggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaat 182  Q
    ||||||||||| |||| |||||||||||||||| |||| |||||||||  ||||||||||||| ||| || || |||||||||||| ||||| ||||||     
T  34518225 agggactaacttattctaacgtgagtaacgttttggaccaacttgaaatttttaaaacgtaagggaccaatttaaaacttttaaaatataaaggaccaac 34518324  T
Q  183 ttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    ||| || |||||||||||||| |||||||||||||| |||||    
T  34518325 ttaaaaactaaaataaacataagggatcaaacatacgattaa 34518366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 83 - 224
Target Start/End: Complemental strand, 3073121 - 3072979
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgtttg-gacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||||| |||||||||||| |||| |||  ||| |||||||||| ||||||||||||||||| ||||| |||||||||||||| ||  ||||||    
T  3073121 aagggactaacttattccaacgtgaataacattttagaccaacttgaaacttttaaaacgtaagagaccaacttaaaacttttaaaacacaagggaccaa 3073022  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
     ||| || ||||||||||||||  ||||||||||| |||||||    
T  3073021 cttaaaatctaaaataaacataaaggatcaaacatgcaattaa 3072979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 83 - 235
Target Start/End: Original strand, 31872869 - 31873021
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    ||||||||  || ||||||||||||||||||||| |||| |||||||||| ||||||||||||| ||| ||||| ||||||||||||||| |  ||||||    
T  31872869 aagggactggcttattccaacgtgagtaacgttttggaccaacttgaaacttttaaaacgtaagggaccaacttgaaacttttaaaacat-agggaccaa 31872967  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaagctttatttta 235  Q
     ||  || |||||||||||||| ||||||||| || |||||||||  |||||||    
T  31872968 cttgaaaactaaaataaacataagggatcaaatatgcaattaagccatatttta 31873021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 83 - 226
Target Start/End: Complemental strand, 42604773 - 42604629
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgtttg-gacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||| ||||||| |||||||||||||||||||||  ||| |||||||||| ||||||||  ||| ||| ||||| |||||||||||| |||||  |||||    
T  42604773 aaggaactaacttattccaacgtgagtaacgttttagaccaacttgaaacttttaaaactaaagggaccaacttgaaacttttaaaatataaagtaccaa 42604674  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     ||  || |||||||||||||| |||||||||||| |||||||||    
T  42604673 cttgaaaactaaaataaacataagggatcaaacatgcaattaagc 42604629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 48171706 - 48171849
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgtttgga-cgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||||| |||| || ||||||||||||| || | |||||||||| |||||||| |||| ||  | ||| |||||||||||||||||| ||||||    
T  48171706 aagggactaacttattcaaatgtgagtaacgttttgaaccaacttgaaacttttaaaacataagggaacagcttgaaacttttaaaacataaaggaccaa 48171805  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaag 225  Q
     ||  ||||||||||||||||| |||| ||||||| ||||||||    
T  48171806 cttgaaacctaaaataaacataagggaccaaacatgcaattaag 48171849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 87 - 225
Target Start/End: Complemental strand, 37245776 - 37245637
Alignment:
Q  87 gactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    ||||| || ||||||||||||||||||||| |||| ||||| |||| ||||||| ||||| ||  ||||| |||||||||||| ||||  |||||| |||    
T  37245776 gactagcttattccaacgtgagtaacgttttggaccaacttaaaacttttaaaatgtaagggatcaacttgaaacttttaaaatataagagaccaactta 37245677  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaag 225  Q
     || |||||||||||||| ||||||||| || ||||||||    
T  37245676 aaaactaaaataaacataagggatcaaatatgcaattaag 37245637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 224
Target Start/End: Complemental strand, 34518127 - 34517965
Alignment:
Q  63 aaactcaatatcatgttgtaaagggactaactaattccaacgtgagtaacgtttgga-cgaacttgaaacctttaaaacgtaagagactaacttcaaact 161  Q
    |||||||||||||||| ||  ||||||||||| | | ||| ||||||||||||| || | ||||| |||| ||||||||||| | |||  | || |||||    
T  34518127 aaactcaatatcatgtcgtggagggactaacttaattcaatgtgagtaacgttttgaaccaacttaaaacttttaaaacgtaggggaccgagttgaaact 34518028  T
Q  162 tttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
     |||||||||||  |||||| ||| || |||||||||||||| |||||||||||| |||||||    
T  34518027 gttaaaacataatggaccaacttaaaaactaaaataaacataagggatcaaacatgcaattaa 34517965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 35795477 - 35795307
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||||||||| |   ||||||||| || |||| |||||| ||||||||| |||| | |||||||||||||||||||||| ||| ||||  ||||    
T  35795477 aaactcaatatcatgtcgcggaagggactagcttattcaaacgtgggtaacgttttggaccaccttgaaacctttaaaacgtaagggaccaactcgaaac 35795378  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagctttat 231  Q
    |||||||||  ||  |||||| ||  || |||||||||||||| | |||||||||| ||||||||| ||||    
T  35795377 ttttaaaactcaagggaccaacttgaaatctaaaataaacataagagatcaaacatgcaattaagccttat 35795307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 224
Target Start/End: Original strand, 33460159 - 33460297
Alignment:
Q  82 aaagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgacca 180  Q
    ||||||||||||| ||||||||||||||||||||| |||| ||     ||| ||||||||||||| ||  ||||| |||||||||||||||||  |||||    
T  33460159 aaagggactaacttattccaacgtgagtaacgttttggaccaa-----aacttttaaaacgtaagggatcaacttgaaacttttaaaacataagggacca 33460253  T
Q  181 atttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    | ||  || |||||||||||||| | |||||||||| |||||||    
T  33460254 acttgaaaactaaaataaacataagagatcaaacatgcaattaa 33460297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 18519481 - 18519316
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgtttgg-acgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    ||||||||||||||||||   |||||||||||| ||| ||| |||||||||||||   |  |||||||||  ||||||||||||| ||| ||||| ||||    
T  18519481 aaactcaatatcatgttgcggaagggactaacttatttcaaagtgagtaacgttttatatcaacttgaaatttttaaaacgtaagggaccaacttaaaac 18519382  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     ||||||||||||  |||||| ||| || |||||||||||||| || ||  ||||| |||||||||    
T  18519381 atttaaaacataagggaccaacttaaaaactaaaataaacataaggtattgaacatgcaattaagc 18519316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 231
Target Start/End: Complemental strand, 33460006 - 33459889
Alignment:
Q  114 tttggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaa 213  Q
    ||||||| |||||||||| ||||||||||||  ||| ||||| |||||||||||||||||  ||| || ||  || |||||||||||||| ||||||||     
T  33460006 tttggaccaacttgaaacttttaaaacgtaaaggaccaacttgaaacttttaaaacataagggactaacttgaaaactaaaataaacataagggatcaag 33459907  T
Q  214 catacaattaagctttat 231  Q
    ||| ||||||||| ||||    
T  33459906 catgcaattaagccttat 33459889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 48171574 - 48171442
Alignment:
Q  86 ggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattt 184  Q
    ||||||||| ||||||||||||||||||||| |||  |||||||||        ||||||| ||| ||||| |||||||||||||||||  ||||||  |    
T  48171574 ggactaacttattccaacgtgagtaacgttttggattaacttgaaa--------acgtaagggaccaacttgaaacttttaaaacataagggaccaacct 48171483  T
Q  185 acaacctaaaataaacatatgggatcaaacatacaattaag 225  Q
      ||||||||||||||||| |||||||||||| ||||||||    
T  48171482 gaaacctaaaataaacataagggatcaaacatgcaattaag 48171442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 3075195 - 3075281
Alignment:
Q  88 actaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataa 173  Q
    ||||||| ||||||| ||||||||||||| |||| |||||||||| ||||||||||||  ||| ||||| |||||||||||||||||    
T  3075195 actaacttattccaatgtgagtaacgttttggacaaacttgaaacttttaaaacgtaatggaccaacttgaaacttttaaaacataa 3075281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 42604902 - 42605043
Alignment:
Q  86 ggactaactaattccaacgtgagtaacgtttg-gacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattt 184  Q
    |||| |||| |||| || |||||||||||||  ||| ||| |||||| || |||||||||| ||| ||||| ||||||||||||| |||  | |||| ||    
T  42604902 ggacaaacttattcaaatgtgagtaacgtttttgaccaacatgaaactttaaaaacgtaagggaccaacttgaaacttttaaaacctaagggtccaactt 42605001  T
Q  185 acaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
      || |||||||||||||| |||||||||||| |||||||||    
T  42605002 gaaaactaaaataaacataagggatcaaacatgcaattaagc 42605043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 87 - 225
Target Start/End: Original strand, 35795590 - 35795729
Alignment:
Q  87 gactaactaattccaacgtgagtaacgtttgga-cgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||||| ||||  | ||||||||||||| || | |||||||||| |||||||| |||| ||| || || ||||||||||||||| |  |||||| |||    
T  35795590 gactaacttattcttatgtgagtaacgttttgaaccaacttgaaacttttaaaacataagggaccaatttaaaacttttaaaacatcagggaccaactta 35795689  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaag 225  Q
     || ||||||||||||||  ||| ||||||| ||||||||    
T  35795690 aaatctaaaataaacataaaggaccaaacatgcaattaag 35795729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 225
Target Start/End: Complemental strand, 142954 - 142811
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgtttgga-cgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||||| | ||||| || ||||||||||  | | || ||||||| |||||||| |||| ||| ||||| ||| |||||||||| ||  ||||||    
T  142954 aagggactaacttactccaatgtaagtaacgttttaaacaaatttgaaacttttaaaacataagggaccaacttgaaaattttaaaacacaagggaccaa 142855  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaag 225  Q
     ||| ||||||||||| ||||| ||||  |||||| ||||||||    
T  142854 cttaaaacctaaaatacacataagggacaaaacatgcaattaag 142811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 22792389 - 22792290
Alignment:
Q  126 tgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaag 225  Q
    |||||| |||||||| |||  ||| ||||| |||||||||||||| ||  |||||| ||| ||| |||||||||||||||||| |||| || ||||||||    
T  22792389 tgaaacttttaaaacataacggaccaacttaaaacttttaaaacaaaagggaccaacttaaaacttaaaataaacatatgggaccaaatatgcaattaag 22792290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 31872819 - 31872749
Alignment:
Q  86 ggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaactt 155  Q
    ||||||||| ||| ||| ||||||||||||| |||| |||||||||| ||||||||||||| ||| |||||    
T  31872819 ggactaacttatttcaatgtgagtaacgttttggaccaacttgaaacttttaaaacgtaagggaccaactt 31872749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 18519592 - 18519661
Alignment:
Q  87 gactaactaattccaacgtgagtaacg-tttggacgaacttgaaacctttaaaacgtaagagactaactt 155  Q
    |||||||| |||||||||||||||||| ||| ||  |||||||||| ||||||||||| ||||| |||||    
T  18519592 gactaacttattccaacgtgagtaacgttttagatcaacttgaaacttttaaaacgtatgagaccaactt 18519661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 30971926 - 30971829
Alignment:
Q  122 aacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacataca 219  Q
    ||||| |||| ||||||| |||||  | |||||| ||||||||||||||||||  | ||| ||| || ||||||||||| || ||||||||| |||||    
T  30971926 aacttaaaacttttaaaatgtaaggtaataacttaaaacttttaaaacataaagaaacaacttaaaaactaaaataaacctaagggatcaaatataca 30971829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 31872782 - 31872709
Alignment:
Q  151 aacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    ||||| ||||||||||||| |||  |||||| ||  || |||||||||||||| |||||||||||| |||||||    
T  31872782 aacttgaaacttttaaaacgtaagggaccaactttaaaactaaaataaacataagggatcaaacatgcaattaa 31872709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 36783416 - 36783489
Alignment:
Q  151 aacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    ||||| ||| |||||||||||||| |||||| ||| || ||||||| |||||| | || |||||||||||||||    
T  36783416 aacttgaaatttttaaaacataaaagaccaacttaaaatctaaaatgaacataagagaccaaacatacaattaa 36783489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 25622682 - 25622607
Alignment:
Q  151 aacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    ||||| ||||||| |||||||||  ||| |||||  ||||||||||||||||| ||||  |||||| |||||||||    
T  25622682 aacttgaaactttcaaaacataagagactaatttgaaacctaaaataaacataagggactaaacatgcaattaagc 25622607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 25622718 - 25622652
Alignment:
Q  87 gactaactaattccaacgtgagtaacg-tttggacgaacttgaaacctttaaaacgtaagagactaa 152  Q
    |||||||| ||||||| |||||||||| |||| || |||||||||| || ||||| |||||||||||    
T  25622718 gactaacttattccaatgtgagtaacgttttgaaccaacttgaaactttcaaaacataagagactaa 25622652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 30972014 - 30971909
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgtttggacgaacttgaaacctttaaaacgtaagagactaacttcaaact 161  Q
    |||||||||||||||| |   |||||| ||||| |||| || |||||||||||||  || ||||| |||| ||||||| |||||  |||||||| |||||    
T  30972014 aaactcaatatcatgtcgcggaagggagtaacttattcaaatgtgagtaacgttta-accaacttaaaacttttaaaatgtaaggtactaacttaaaact 30971916  T
Q  162 tttaaaa 168  Q
    |||||||    
T  30971915 tttaaaa 30971909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 37245932 - 37245982
Alignment:
Q  176 gaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    |||||| ||| || |||||||||||||| |||||||||||| |||||||||    
T  37245932 gaccaacttaaaaactaaaataaacataagggatcaaacatgcaattaagc 37245982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 14419887 - 14419842
Alignment:
Q  158 aacttttaaaacataaatgaccaatttacaacctaaaataaacata 203  Q
    ||||||||||||||||  |||||| ||| |||||||||||||||||    
T  14419887 aacttttaaaacataagggaccaacttaaaacctaaaataaacata 14419842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 87 - 228
Target Start/End: Original strand, 29526867 - 29527009
Alignment:
Q  87 gactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||||| ||||||||||||||||||||| |||| |||||||||| ||||||||||||| ||| ||||| |||||||||||||||||  |||||| |||    
T  29526867 gactaacttattccaacgtgagtaacgttttggaccaacttgaaacttttaaaacgtaagggaccaacttaaaacttttaaaacataatggaccaactta 29526966  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaagctt 228  Q
     ||  ||||||||||||| ||||| ||||||||||||||||||    
T  29526967 aaaattaaaataaacataagggattaaacatacaattaagctt 29527009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 90 - 224
Target Start/End: Original strand, 32622465 - 32622600
Alignment:
Q  90 taactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaa 188  Q
    ||||| ||||||||||||||||||||| |||| ||||| |||| ||||| |||||| |||| ||||||||||||||||||||| || |||||| ||| ||    
T  32622465 taacttattccaacgtgagtaacgttttggaccaacttaaaacttttaatacgtaaaagaccaacttcaaacttttaaaacatgaaggaccaacttaaaa 32622564  T
Q  189 cctaaaataaacatatgggatcaaacatacaattaa 224  Q
     |||||||||||||| |||||||||||| |||||||    
T  32622565 actaaaataaacataagggatcaaacatgcaattaa 32622600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 84 - 232
Target Start/End: Complemental strand, 13490316 - 13490167
Alignment:
Q  84 agggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaat 182  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||| |||| ||||||||||||||||| ||||| |||||||||||||||||| || |||     
T  13490316 agggactaacttattccaacgtgagtaacgttttggaccaacttaaaacttttaaaacgtaagagaccaacttaaaacttttaaaacataaaggatcaac 13490217  T
Q  183 ttacaacctaaaataaacatatgggatcaaacatacaattaagctttatt 232  Q
    ||| || ||||| |||||||| | ||||| || | ||||||||| |||||    
T  13490216 ttaaaaactaaagtaaacataagagatcagacctgcaattaagccttatt 13490167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 13140400 - 13140289
Alignment:
Q  115 ttggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaac 214  Q
    |||||| |||||||||||||||||||||||| ||| ||||| |||||||||||||||||| |||||| ||| ||||||||||||||||| || |||||||    
T  13140400 ttggaccaacttgaaacctttaaaacgtaagtgaccaacttaaaacttttaaaacataaaagaccaacttaaaacctaaaataaacataaggcatcaaac 13140301  T
Q  215 atacaattaagc 226  Q
    || ||| |||||    
T  13140300 atgcaagtaagc 13140289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 88 - 226
Target Start/End: Complemental strand, 27956863 - 27956724
Alignment:
Q  88 actaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttac 186  Q
    ||||||| ||||||||||| |||| |||| |||| |||||||||| ||||||||||||| ||| || || ||||||||||||||| || |||| |||||     
T  27956863 actaacttattccaacgtgggtaatgttttggaccaacttgaaacttttaaaacgtaagggaccaatttaaaacttttaaaacatgaaggacctatttaa 27956764  T
Q  187 aacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    || |||||||||||||| |||||||||||| |||||||||    
T  27956763 aaactaaaataaacataagggatcaaacatgcaattaagc 27956724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 1352996 - 1352831
Alignment:
Q  63 aaactcaatatcatgttg-taaagggactaactaattccaacgtgagtaacgtttg-gacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||||||||| | |||||||||||||| ||| |||||||| |||| |||  ||| ||||| |||| ||||||| ||||||||| ||||| |||     
T  1352996 aaactcaatatcatgtcgctaaagggactaacttatttcaacgtgaataacattttagaccaacttaaaacttttaaaatgtaagagaccaacttaaaat 1352897  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    || ||||| | ||  |||||||||| ||||||||||||||||| || ||||||||| |||||||||    
T  1352896 ttgtaaaatacaagggaccaatttaaaacctaaaataaacataaggaatcaaacatgcaattaagc 1352831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 44995333 - 44995472
Alignment:
Q  87 gactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||||| ||||||||||||||||||||| |||| ||||||| || ||||||||||||| ||| ||||| |||||||||||| || ||  ||||| |||    
T  44995333 gactaacttattccaacgtgagtaacgttttggaccaacttgatacttttaaaacgtaagggaccaacttgaaacttttaaaatatgaagtaccaactta 44995432  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     || ||||||||||| || ||| ||||| || |||||||||    
T  44995433 aaaactaaaataaacgtaaggggtcaaa-atgcaattaagc 44995472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 6795481 - 6795583
Alignment:
Q  122 aacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaat 221  Q
    ||||| |||| |||||||||| || ||| ||||| |||||||||||||||||  |||||| ||| ||||||||||||| ||| |||||||||||| ||||    
T  6795481 aactttaaacttttaaaacgttagggaccaactttaaacttttaaaacataatggaccaacttaaaacctaaaataaatataggggatcaaacatgcaat 6795580  T
Q  222 taa 224  Q
    |||    
T  6795581 taa 6795583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 234
Target Start/End: Complemental strand, 29526759 - 29526587
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||||||||| ||  || ||||||||| ||||| |  | |||||||||| |||| |||||||||| ||||||||||||||||| ||||| ||||    
T  29526759 aaactcaatatcatgtcgtggaatggactaacttattcctatataagtaacgttttggaccaacttgaaacttttaaaacgtaagagaccaacttgaaac 29526660  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagctttatttt 234  Q
     ||| ||||||||  |||||| ||  || ||||||||||||||  ||||| ||||| ||||||||  |||||||    
T  29526659 -tttcaaacataagggaccaaattgaaaactaaaataaacataaaggatccaacatgcaattaagtcttatttt 29526587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 39060405 - 39060307
Alignment:
Q  128 aaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    |||| ||||| ||||||| ||| ||||| ||||||||||||||| |  |||||| ||| || |||||||||||||| |||||||||||| |||||||||    
T  39060405 aaacttttaagacgtaagggaccaacttaaaacttttaaaacattagggaccaacttaaaaactaaaataaacataagggatcaaacatgcaattaagc 39060307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 223
Target Start/End: Original strand, 13490422 - 13490583
Alignment:
Q  63 aaactcaatatcatgttgtaaagggactaacta-attccaacgtgagtaacgtttggacgaacttgaaacctttaaaacgtaagagactaacttcaaact 161  Q
    |||||||||||||||| |   | |||||||||  ||||||| ||||||||| ||||||| |||||||||| |||||| |||||| ||| ||||| || ||    
T  13490422 aaactcaatatcatgtcgcggaaggactaactttattccaatgtgagtaacatttggaccaacttgaaacttttaaagcgtaagggaccaacttaaatct 13490521  T
Q  162 tttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaatta 223  Q
    ||||||||||||  ||  || ||  || |||||||||| ||| | |||||||||| ||||||    
T  13490522 tttaaaacataagagagtaacttgaaaactaaaataaatataagtgatcaaacatgcaatta 13490583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 226
Target Start/End: Original strand, 43513807 - 43513972
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgtttgga-cgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||||||||| ||  ||| |||||||| ||| |||||||| |||| ||| || | ||||||||| | |||||||||||| ||  ||||| ||||    
T  43513807 aaactcaatatcatgtcgtggaagtgactaacttatttcaacgtgaataacattttgaaccaacttgaaaacattaaaacgtaagggatcaactttaaac 43513906  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    ||| || ||||||  |||||| ||  ||||||| ||||||||| |||||||||||| ||| |||||    
T  43513907 tttcaagacataagagaccaacttgaaacctaatataaacataagggatcaaacatgcaagtaagc 43513972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 226
Target Start/End: Complemental strand, 3217428 - 3217284
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacg-tttggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||||| |||||||||||||||||| ||| ||| |||||||||  |||||||| |||  ||| ||||| |||| ||||||||||||  ||||||    
T  3217428 aagggactaacttattccaacgtgagtaacgttttagaccaacttgaaaattttaaaacataatggaccaacttgaaacctttaaaacataagggaccaa 3217329  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
      |  ||||||| ||| ||| | |||| ||||||| |||||||||    
T  3217328 catgaaacctaagatatacacaagggaccaaacatgcaattaagc 3217284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 226
Target Start/End: Original strand, 43971782 - 43971927
Alignment:
Q  83 aagggactaactaattcc-aacgtgagtaacg-tttggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgacca 180  Q
    |||||||||||| ||| | ||||||||||||  |||| || ||| |||||| ||||||||   || ||| ||||| |||||||||||||| |  ||||||    
T  43971782 aagggactaacttatttctaacgtgagtaacaatttgaaccaacatgaaacttttaaaacactagggaccaacttgaaacttttaaaacacatgtgacca 43971881  T
Q  181 atttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    | ||  ||||||||||||||||| |||| ||||||| |||||||||    
T  43971882 acttgaaacctaaaataaacataagggaccaaacatgcaattaagc 43971927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 15988518 - 15988610
Alignment:
Q  82 aaagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataa 173  Q
    ||||||||||||| ||||||| |||||||| |||| |||| ||||| |||| |||||||  |||| ||| ||||| |||||||||||||||||    
T  15988518 aaagggactaacttattccaatgtgagtaatgttttggaccaacttaaaacttttaaaatataagggaccaacttgaaacttttaaaacataa 15988610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 24284109 - 24284189
Alignment:
Q  122 aacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacat 202  Q
    |||||||||| |||||||  |||||| | ||||| |||||||||||||||||  |||||||||  ||||||||||||||||    
T  24284109 aacttgaaacttttaaaatataagagtcaaacttaaaacttttaaaacataagggaccaatttgtaacctaaaataaacat 24284189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 13140601 - 13140676
Alignment:
Q  151 aacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    ||||| |||||||||||| |||||||||||| ||| || |||||||||||| | |||| ||||||| |||||||||    
T  13140601 aacttgaaacttttaaaatataaatgaccaacttaaaatctaaaataaacacaagggaccaaacatgcaattaagc 13140676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 224
Target Start/End: Complemental strand, 24015975 - 24015813
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||||||||||||  ||| |||||||| ||| ||| || ||||| |||| |||| ||| |||||  || |||||||||  ||| ||||| ||||    
T  24015975 aaactcaatatcatgttgtggaagagactaacttatttcaatgtcagtaatgttttggaccaacatgaaattttcaaaacgtaaaggaccaacttaaaac 24015876  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    |||||||||||||  || ||| ||  || |||||||||||||| ||||| |||||| |||||||    
T  24015875 ttttaaaacataagggatcaacttgaaaactaaaataaacataagggat-aaacatgcaattaa 24015813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 24065977 - 24065870
Alignment:
Q  122 aacttgaaacctttaaaacgtaagag-actaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaa 220  Q
    |||||||||| |||||||| ||| || || | ||| |||||||||||||||||  |||||| ||  ||||| ||||||||| | |||||||||||| |||    
T  24065977 aacttgaaacttttaaaacataaaaggacaagcttgaaacttttaaaacataagggaccaaattgaaacctcaaataaacacaagggatcaaacattcaa 24065878  T
Q  221 ttaagctt 228  Q
    ||||||||    
T  24065877 ttaagctt 24065870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 26845520 - 26845591
Alignment:
Q  151 aacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaatt 222  Q
    ||||| |||||||||||||||||  |||||| ||| ||||||||||||||||| |||| ||||||| |||||    
T  26845520 aacttgaaacttttaaaacataagggaccaacttaaaacctaaaataaacataagggaccaaacatgcaatt 26845591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 216
Target Start/End: Original strand, 27956969 - 27957124
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||||||||| ||  ||||||| |||| | |  ||| |||||||||||| |||| |||||||||| |||||| |||||  ||| || || ||||    
T  27956969 aaactcaatatcatgtggtggaagggacaaacttacttaaacatgagtaacgttttggaccaacttgaaacatttaaagcgtaacggaccaagttaaaac 27957068  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacat 216  Q
    |||||||| ||||  |||| | ||  ||||||||||||||||| | ||||||||||    
T  27957069 ttttaaaatataagagacctacttgaaacctaaaataaacataagagatcaaacat 27957124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 14473799 - 14473917
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||||| |||||||  |||||||||||| |||| ||||||||||  | |||||  |||| || ||||| |||||||||||||||||  |||| |    
T  14473799 aagggactaacttattccaaaatgagtaacgttttggaccaacttgaaactctcaaaacaaaagacaccaacttaaaacttttaaaacataagggaccta 14473898  T
Q  182 tttacaacctaaaataaac 200  Q
     ||  ||||||||||||||    
T  14473899 cttgaaacctaaaataaac 14473917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 1353141 - 1353214
Alignment:
Q  151 aacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    ||||| |||||||||||||||||  |||||| ||| ||||||||||||||||  | || |||||||||||||||    
T  1353141 aacttgaaacttttaaaacataagagaccaacttaaaacctaaaataaacatgagagaccaaacatacaattaa 1353214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 32622286 - 32622217
Alignment:
Q  157 aaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    |||||||||||||||||  |||||| ||  || |||||||||||||| |||||||||||| |||||||||    
T  32622286 aaacttttaaaacataagagaccaacttgaaaactaaaataaacataagggatcaaacatgcaattaagc 32622217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 3221096 - 3221187
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgtttg-gacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataa 173  Q
    ||||||| |||| |||||||| ||||||||||||  ||| |||||||||  |||||||| |||  ||| ||||| |||||||||||||||||    
T  3221096 aagggacaaacttattccaacatgagtaacgttttagaccaacttgaaaattttaaaacataatggaccaacttgaaacttttaaaacataa 3221187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 223
Target Start/End: Original strand, 38262804 - 38262942
Alignment:
Q  86 ggactaactaattccaacgtgagtaacgtttg-gacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattt 184  Q
    ||||||||| |||| || | |||||||||||| ||| ||||| |||| |||||||  ||||||||||| || |||||||| ||||||||  ||  |  ||    
T  38262804 ggactaacttattctaatgggagtaacgtttgagacaaacttaaaacttttaaaatataagagactaatttgaaacttttgaaacataagagattagctt 38262903  T
Q  185 acaacctaaaataaacatatgggatcaaacatacaatta 223  Q
      ||| ||||||||||||||| || |||||||| |||||    
T  38262904 gaaacttaaaataaacatatgagaccaaacataaaatta 38262942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 36006247 - 36006319
Alignment:
Q  151 aacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaatta 223  Q
    ||||| |||| |||||||||||||||||||| ||| ||| ||||||||| ||| || ||||| ||| ||||||    
T  36006247 aacttaaaacatttaaaacataaatgaccaacttaaaacttaaaataaaaataaggaatcaatcatgcaatta 36006319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 37762316 - 37762407
Alignment:
Q  122 aacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaa 213  Q
    |||||||||||||||||| ||||| ||  || || ||| |||||||||||||  ||| |||||  || |||||||||||||| | |||||||    
T  37762316 aacttgaaacctttaaaatgtaagggatcaatttaaaaattttaaaacataagagactaatttgaaaactaaaataaacataagagatcaaa 37762407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 43971696 - 43971652
Alignment:
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    |||| ||||||||||||||||| |||||||||||| || ||||||    
T  43971696 tttaaaacctaaaataaacataagggatcaaacatgcatttaagc 43971652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 83 - 226
Target Start/End: Original strand, 3301 - 3445
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||||| ||||||| ||||||||||||| |||| |||||||||| ||||||||||||| ||| ||||| |||||||||||||||||  ||||||    
T  3301 aagggactaacttattccaaagtgagtaacgttttggaccaacttgaaacttttaaaacgtaagggaccaacttgaaacttttaaaacataagggaccaa 3400  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     ||  || |||||||||||||| |||||||||||| |||||||||    
T  3401 cttgaaaactaaaataaacataagggatcaaacatgcaattaagc 3445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 83 - 226
Target Start/End: Original strand, 11306523 - 11306667
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||||| ||||||| ||||||||||||| |||| |||||||||| ||||||||||||| ||| ||||| |||||||||||||||||  ||||||    
T  11306523 aagggactaacttattccaaagtgagtaacgttttggaccaacttgaaacttttaaaacgtaagggaccaacttgaaacttttaaaacataagggaccaa 11306622  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     ||  || |||||||||||||| |||||||||||| |||||||||    
T  11306623 cttgaaaactaaaataaacataagggatcaaacatgcaattaagc 11306667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 63 - 225
Target Start/End: Original strand, 45505308 - 45505472
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||||||||| ||  ||| |||||||| |||| || ||||||||||||| |||| |||||||||| ||||||||||||| ||| ||||| ||||    
T  45505308 aaactcaatatcatgtcgtggaagagactaacttattctaatgtgagtaacgttttggaccaacttgaaacttttaaaacgtaagggaccaacttgaaac 45505407  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaag 225  Q
    |||||||||||||  |||||| ||  || |||||||||||||| |||||||||||| ||||||||    
T  45505408 ttttaaaacataagggaccaacttgaaaactaaaataaacataagggatcaaacatgcaattaag 45505472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 83 - 226
Target Start/End: Original strand, 49984068 - 49984212
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||||||| |||| ||| ||||| |||||||||||||||||   |||||    
T  49984068 aagggactaacttattccaacgtgagtaacgttttggaccaacttgaaaactttaaaacataagggaccaacttgaaacttttaaaacataaggaaccaa 49984167  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
      |  ||||||||||||||||| |||||||||||| |||||||||    
T  49984168 catgaaacctaaaataaacataagggatcaaacatgcaattaagc 49984212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 83 - 226
Target Start/End: Complemental strand, 4416619 - 4416475
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||||| ||||||||||||||||||||| |||| |||||||||| ||||||||||||  ||| ||||| |||||||||||||||||  || |||    
T  4416619 aagggactaacttattccaacgtgagtaacgttttggaccaacttgaaacttttaaaacgtaaaggaccaacttgaaacttttaaaacataagggatcaa 4416520  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     ||| || ||||||||||  || |||||||||||| |||||||||    
T  4416519 cttaaaaactaaaataaatgtaagggatcaaacatgcaattaagc 4416475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 18414960 - 18415100
Alignment:
Q  87 gactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||||| ||| ||||||||||||||||| |||| |||||||||| ||||||||| ||| ||| ||||| ||||||||||||||| || || ||| ||     
T  18414960 gactaacttatttcaacgtgagtaacgttttggaccaacttgaaacttttaaaacgcaagggaccaacttgaaacttttaaaacatgaaggatcaacttg 18415059  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     || |||||||||||||| ||||||||||||||||||||||    
T  18415060 aaaactaaaataaacataagggatcaaacatacaattaagc 18415100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 63 - 224
Target Start/End: Original strand, 4416726 - 4416889
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||||||||| ||  |||||||||||| ||||||| ||||||||||||| |||| ||||| |||| ||||||| ||||| ||| ||||| |||     
T  4416726 aaactcaatatcatgtcgtggaagggactaacttattccaatgtgagtaacgttttggaccaacttaaaacttttaaaatgtaagggaccaacttaaaat 4416825  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    |||||||||||||  |||||| ||| || |||||||||||||| | |||||||||| |||||||    
T  4416826 ttttaaaacataagggaccaacttaaaaactaaaataaacataagagatcaaacatgcaattaa 4416889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 17524368 - 17524203
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||||||||| | | || ||||||||| ||||||| ||||||||||||| |||  || ||||||| |||||||| |||||||  ||||| ||||    
T  17524368 aaactcaatatcatgtcgcataatggactaacttattccaatgtgagtaacgttttggatcaatttgaaacttttaaaacataagagatcaacttgaaac 17524269  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    |||||||||||||  |||||| ||  || |||||||||||||| |||||||||||| |||||||||    
T  17524268 ttttaaaacataagggaccaacttgaaaactaaaataaacataagggatcaaacatgcaattaagc 17524203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 83 - 226
Target Start/End: Complemental strand, 45505202 - 45505058
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||| | ||||||||||||||| ||||| |||| |||||||||| |||||||||||||  || ||| | ||||||||||||||| | | |||||    
T  45505202 aagggactaatttattccaacgtgagtagcgttttggaccaacttgaaacttttaaaacgtaaggaaccaacatgaaacttttaaaacattagtaaccaa 45505103  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     ||| || |||||||||||||| |||||||||||| |||||||||    
T  45505102 cttaaaaactaaaataaacataagggatcaaacatgcaattaagc 45505058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 83 - 226
Target Start/End: Complemental strand, 31141822 - 31141678
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    ||||||||| || ||  |||||||| |||||||| ||||||| ||||||| |||||||| |||| ||||||||| |||  ||||||||||||||||||||    
T  31141822 aagggactagcttatatcaacgtgattaacgttttggacgaatttgaaacttttaaaacataagggactaacttaaaaaatttaaaacataaatgaccaa 31141723  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     ||  ||||||| ||||||||| |||| ||||||| |||||||||    
T  31141722 cttgaaacctaagataaacatacgggaccaaacatgcaattaagc 31141678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 63 - 225
Target Start/End: Complemental strand, 43913557 - 43913394
Alignment:
Q  63 aaactcaatatcatgttgtaaagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaact 161  Q
    |||||||||||||||| ||  |  | |||||| |||| || ||||||||||||| |||  |||||||||| |||||||||||| |||| || || |||||    
T  43913557 aaactcaatatcatgtcgtggaatggctaactgattctaatgtgagtaacgttttggatcaacttgaaacttttaaaacgtaaaagaccaatttaaaact 43913458  T
Q  162 tttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaag 225  Q
    ||||||| ||||  |||||| ||| || |||||||||||||| |||||||||||| ||||||||    
T  43913457 tttaaaatataagggaccaacttaaaaactaaaataaacataagggatcaaacatgcaattaag 43913394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 36752994 - 36752868
Alignment:
Q  91 aactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaac 189  Q
    |||| ||||||||||| ||||||||| |||| |||||||||  ||||||||| ||| ||| ||||| ||||||||||||||| || |||||||||| ||     
T  36752994 aacttattccaacgtgggtaacgttttggaccaacttgaaatttttaaaacgcaagggaccaacttgaaacttttaaaacatgaaggaccaatttaaaaa 36752895  T
Q  190 ctaaaataaacatatgggatcaaacat 216  Q
     ||||||||||||| ||||||||||||    
T  36752894 ttaaaataaacataagggatcaaacat 36752868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 37724578 - 37724438
Alignment:
Q  87 gactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||||| |||||||| |||||||||||| |||| || ||||||  ||||||| ||||| ||| ||||| ||||||||||| ||| || ||||||||||    
T  37724578 gactaacttattccaacatgagtaacgttttggaccaatttgaaaattttaaaatgtaagggaccaacttgaaacttttaaatcatgaaggaccaattta 37724479  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     || |||||||||||||| | ||||| |||| |||||||||    
T  37724478 aaaactaaaataaacataagagatcatacatgcaattaagc 37724438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 87 - 211
Target Start/End: Complemental strand, 18414861 - 18414736
Alignment:
Q  87 gactaactaattccaacgtgagtaacgtttgga-cgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||||| ||||||||||||||||||||| || | |||||||||  ||||||| ||||| ||| ||||| |||||||||||||||||  |||||| |||    
T  18414861 gactaacttattccaacgtgagtaacgttttgaaccaacttgaaatttttaaaatgtaagggaccaacttgaaacttttaaaacataagggaccaactta 18414762  T
Q  186 caacctaaaataaacatatgggatca 211  Q
     ||  ||||||||||||| |||||||    
T  18414761 aaaattaaaataaacataagggatca 18414736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 48845876 - 48845711
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||||||||| | | ||  |||||||| ||| ||| ||||||||| ||| |||| ||||| |||  ||||||||||||| ||| ||||| ||||    
T  48845876 aaactcaatatcatgtcgcagaaaagactaacttatttcaatgtgagtaacattttggaccaacttaaaatttttaaaacgtaagggaccaacttgaaac 48845777  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    |||||||||||||  | |||| ||| || |||||||||||||| | |||||||||| |||||||||    
T  48845776 ttttaaaacataaggggccaacttataaactaaaataaacataagagatcaaacatgcaattaagc 48845711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 4592629 - 4592765
Alignment:
Q  87 gactaactaattccaacgtgagtaacgtttgga-cgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||| | |||| || ||||||||||||| || | ||||||||||  ||||||| |||| ||| ||||| |||||||||||||||||  |||||| |||    
T  4592629 gactaatttattctaatgtgagtaacgttttgaaccaacttgaaactgttaaaacataagggaccaacttaaaacttttaaaacataagagaccaactta 4592728  T
Q  186 caacctaaaataaacatatgggatcaaacatacaatt 222  Q
     ||||||||||||||||| |||| ||||||| |||||    
T  4592729 aaacctaaaataaacataagggaccaaacatgcaatt 4592765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 63 - 224
Target Start/End: Original strand, 20269113 - 20269276
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||| |||||| |||| ||| |||||||| ||| |||  || |||||||| |||| |||| |||||||||||||||||||||||| ||   |||| |||     
T  20269113 aaacacaatattatgtcgtagaagggacttacttattataatgtgagtaatgttttggaccaacttgaaacctttaaaacgtaagggaacgactttaaat 20269212  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    |||||||||||||  |||||| ||| ||| ||||||||||||| | |||||||||| |||||||    
T  20269213 ttttaaaacataagagaccaacttaaaacgtaaaataaacatacgagatcaaacatgcaattaa 20269276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 20870970 - 20870883
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaac 169  Q
    |||||||||||| ||||||| ||||||||||||| |||| |||||||||| ||||||||||||| ||| ||||| |||||||||||||    
T  20870970 aagggactaacttattccaatgtgagtaacgttttggacaaacttgaaacttttaaaacgtaagggaccaacttaaaacttttaaaac 20870883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 87 - 225
Target Start/End: Original strand, 48845987 - 48846126
Alignment:
Q  87 gactaactaattccaacgtgagtaacgtttg-gacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||| | |||||||||||||||||||||  | | |||||||||| |||||||| ||||  || | ||| |||||||||||||||||  |||||| |||    
T  48845987 gactaatttattccaacgtgagtaacgttttagtccaacttgaaacttttaaaacataaggcaccatcttaaaacttttaaaacataagggaccaactta 48846086  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaag 225  Q
     ||  ||||||||||||| |||||||||||| ||||||||    
T  48846087 aaaagtaaaataaacataagggatcaaacatgcaattaag 48846126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 225
Target Start/End: Complemental strand, 46397431 - 46397306
Alignment:
Q  101 aacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaa 199  Q
    |||||||||||||||| |||| ||||| |||| ||||||||||||| ||| ||||| ||||||||||||||| |  || ||| |   |||||||||||||    
T  46397431 aacgtgagtaacgttttggaccaacttaaaacttttaaaacgtaagggaccaacttgaaacttttaaaacatgagggatcaactcgaaacctaaaataaa 46397332  T
Q  200 catatgggatcaaacatacaattaag 225  Q
     |||| ||||||||||| ||||||||    
T  46397331 tatataggatcaaacatgcaattaag 46397306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 226
Target Start/End: Complemental strand, 49983933 - 49983792
Alignment:
Q  86 ggactaactaattccaacgtgagtaacgtttgga-cgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattt 184  Q
    ||||||||| |||| || ||||||||||||| || | ||||| |||  |||||||| |||| ||| |||||||||||||||||||||||| |||||| ||    
T  49983933 ggactaacttattcaaatgtgagtaacgttttgaaccaacttaaaatttttaaaacataagggaccaacttcaaacttttaaaacataaaggaccaactt 49983834  T
Q  185 acaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
      || ||||||||| || | |||| ||||||| |||||||||    
T  49983833 gaaatctaaaataagcacaagggaccaaacatgcaattaagc 49983792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 83 - 226
Target Start/End: Original strand, 17524473 - 17524617
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||||| |||||||||| |||||||||| || | ||||| |||| |||||||| |||| ||  ||||| |||||||||||| |||||  |||||    
T  17524473 aagggactaacttattccaacgtaagtaacgttttggtccaacttaaaacttttaaaacataagggatcaacttgaaacttttaaaaaataaagtaccaa 17524572  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     ||  || ||||||||||| || | |||||||||| |||||||||    
T  17524573 cttgaaaactaaaataaacgtaagagatcaaacatgcaattaagc 17524617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 99 - 226
Target Start/End: Original strand, 48658318 - 48658446
Alignment:
Q  99 ccaacgtgagtaacgtttg-gacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaata 197  Q
    ||||||||| ||||||||  ||| ||||| |||| |||||||  |||| ||| ||||| |||||||||||| || ||||||||||||| || ||||||||    
T  48658318 ccaacgtgactaacgtttttgaccaacttaaaacttttaaaatctaagggaccaacttaaaacttttaaaatatgaatgaccaatttaaaaactaaaata 48658417  T
Q  198 aacatatgggatcaaacatacaattaagc 226  Q
    |||| | || ||||||||| |||||||||    
T  48658418 aacaaaaggaatcaaacatgcaattaagc 48658446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 16399203 - 16399306
Alignment:
Q  101 aacgtgagtaacgtttg-gacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaa 199  Q
    ||||||||||||||||  ||| ||| | |||||||||||||||||  ||| ||||| ||| |||||||||||||| |||||||||| || ||||||||||    
T  16399203 aacgtgagtaacgtttttgaccaacataaaacctttaaaacgtaaacgaccaacttaaaaattttaaaacataaaggaccaatttaaaatctaaaataaa 16399302  T
Q  200 cata 203  Q
    ||||    
T  16399303 cata 16399306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 45170854 - 45170929
Alignment:
Q  151 aacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    ||||| ||||||||||||||| || |||||||||| || |||||||||||||| |||||||||||| |||||||||    
T  45170854 aacttaaaacttttaaaacatgaaggaccaatttaaaaactaaaataaacataagggatcaaacatgcaattaagc 45170929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 226
Target Start/End: Original strand, 2516467 - 2516603
Alignment:
Q  91 aactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaac 189  Q
    |||| ||||||||||||||||| ||| |||| ||| ||||||| ||||| |||||| ||| || || ||||||||||||||||    ||||  ||| |||    
T  2516467 aacttattccaacgtgagtaacattttggaccaacatgaaaccattaaatcgtaagggaccaatttgaaacttttaaaacatatgaaaccatattaaaac 2516566  T
Q  190 ctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    ||| |||||| ||| |||||||||||| |||||||||    
T  2516567 ctagaataaaaataagggatcaaacatgcaattaagc 2516603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 52485611 - 52485755
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||| | |||| |||||||||||  ||| ||||  ||||||||| ||||||| |||||||||  |||| |||||||||||| ||||  ||||||    
T  52485611 aagggactaatttattctaacgtgagtaatattttggaccgacttgaaacttttaaaatgtaagagacccacttaaaacttttaaaatataagggaccaa 52485710  T
Q  182 -tttacaacctaaaataaacatatgggatcaaacatacaattaag 225  Q
     || | || ||||||||||||||   |||||||||| ||||||||    
T  52485711 cttaaaaaactaaaataaacataaaagatcaaacatgcaattaag 52485755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 4592467 - 4592400
Alignment:
Q  136 aaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacata 203  Q
    ||||||||||||| |||||| |||||||||||||||||  |||||| ||| |||||||| ||||||||    
T  4592467 aaaacgtaagagattaacttgaaacttttaaaacataagggaccaacttaaaacctaaattaaacata 4592400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 24672026 - 24671952
Alignment:
Q  151 aacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaag 225  Q
    ||||| ||||||||||||||||||||| ||| ||| || ||||||||||| || |||| |||| |||||||||||    
T  24672026 aacttgaaacttttaaaacataaatgatcaacttaaaatctaaaataaacttaagggaccaaatatacaattaag 24671952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 52485453 - 52485343
Alignment:
Q  114 tttggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaa 213  Q
    ||||||| ||| |||||| || |||||||||   || ||||| |||||||||||||||||  || ||| ||| || ||||||||||||||  ||||||||    
T  52485453 tttggactaacatgaaactttgaaaacgtaaagaaccaacttaaaacttttaaaacataagggatcaacttaaaaactaaaataaacataatggatcaaa 52485354  T
Q  214 catacaattaa 224  Q
    ||| |||||||    
T  52485353 catgcaattaa 52485343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 37724673 - 37724757
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacg-tttggacgaacttgaaacctttaaaacgtaag 145  Q
    ||||||||||||||||  |  ||| |||||||| |||||||||||||||||| ||||||| |||||||||| |||||||| ||||    
T  37724673 aaactcaatatcatgtcatggaagagactaacttattccaacgtgagtaacgttttggaccaacttgaaacttttaaaacctaag 37724757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 12292995 - 12292892
Alignment:
Q  119 acgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatac 218  Q
    |||||||| |||  |||||||| ||||  || ||||| |||||||||||||| ||  |||||| ||  ||||||||||||||||| ||||| |||||| |    
T  12292995 acgaacttaaaatttttaaaacataaggtaccaacttgaaacttttaaaacaaaagggaccaactttaaacctaaaataaacataagggattaaacatgc 12292896  T
Q  219 aatt 222  Q
    ||||    
T  12292895 aatt 12292892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 45170765 - 45170696
Alignment:
Q  87 gactaactaattccaacgtgagtaac-gtttggacgaacttgaaacctttaaaacgtaagagactaactt 155  Q
    |||||||| |||||||||||||||||  ||||||| |||||||||| |||||||| |||| ||| |||||    
T  45170765 gactaacttattccaacgtgagtaacattttggaccaacttgaaacttttaaaacctaagggaccaactt 45170696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 20871080 - 20871159
Alignment:
Q  63 aaactcaatatcatgttgt-aaagggactaactaattccaacgtgagtaacg-tttggacgaacttgaaacctttaaaac 140  Q
    ||||||||||||||||||  |||||||| |||| ||||||||||||| |||| |||  || |||||||||| ||||||||    
T  20871080 aaactcaatatcatgttgcgaaagggaccaacttattccaacgtgagcaacgttttaaaccaacttgaaacttttaaaac 20871159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 20871141 - 20871215
Alignment:
Q  151 aacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    ||||| |||||||||||||||||| ||||||  || || |||||||||||||| ||||| |||| | |||||||||    
T  20871141 aacttgaaacttttaaaacataaaggaccaa-ctaaaaactaaaataaacataagggatgaaacgtgcaattaagc 20871215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 37724734 - 37724809
Alignment:
Q  151 aacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    ||||| ||||||||||||| |||  || ||| ||| || |||||||||||||| | |||||||||| |||||||||    
T  37724734 aacttgaaacttttaaaacctaagggatcaacttaaaaactaaaataaacataagagatcaaacatgcaattaagc 37724809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 87 - 224
Target Start/End: Complemental strand, 54341342 - 54341204
Alignment:
Q  87 gactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||| ||| ||||||||||||||||||||| |||| |||||||||| ||||||||||||| ||| ||||| ||||||||||||||| || ||||||||||    
T  54341342 gactgacttattccaacgtgagtaacgttttggaccaacttgaaacttttaaaacgtaagggaccaacttaaaacttttaaaacatgaacgaccaattta 54341243  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaa 224  Q
     |  |||||||||||||| |||||||||||| |||||||    
T  54341242 aatactaaaataaacataagggatcaaacatgcaattaa 54341204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 37285712 - 37285547
Alignment:
Q  63 aaactcaatatcatgttgt-aaagggactaactaattccaacgtgagtaacgtttg-gacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||||||||| |  |||||| |||||| |||  ||||||| ||||||||| ||| |||||||||||||||||||||||| || |||||| ||||    
T  37285712 aaactcaatatcatgtcgcgaaagggtctaacttattttaacgtgaataacgtttgagaccaacttgaaacctttaaaacgtaagggattaacttgaaac 37285613  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    |||||||||  ||   | ||| ||| ||||||||||||||||| ||||| ||||||  ||||||||    
T  37285612 ttttaaaactgaaggaatcaacttataacctaaaataaacataagggattaaacatgtaattaagc 37285547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 33419815 - 33419955
Alignment:
Q  87 gactaactaattccaacgtgagtaacgtttg-gacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||| | |||||||||||||||||||||  | | ||||| |||| ||||||||||||| ||| | ||| |||||||||||||||||  |||||| |||    
T  33419815 gactaatttattccaacgtgagtaacgttttagtccaacttaaaacttttaaaacgtaagggaccatcttgaaacttttaaaacataagggaccaactta 33419914  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     ||  ||||||||||||| |||||||||||| |||||||||    
T  33419915 aaaagtaaaataaacataagggatcaaacatgcaattaagc 33419955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 51388033 - 51388185
Alignment:
Q  88 actaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttac 186  Q
    ||||||| ||| ||||||||||||||||| |||| || || |||| ||||||| ||||| ||  ||||| |||||||||||||||||  |||||| |||     
T  51388033 actaacttatttcaacgtgagtaacgttttggaccaatttaaaacttttaaaatgtaagggatcaacttaaaacttttaaaacataagagaccaacttaa 51388132  T
Q  187 aacctaaaataaacatatgggatcaaacatac-aattaagctttattttaatt 238  Q
    || |||||||||||||| || ||||||||| | |||||||| || ||||||||    
T  51388133 aaactaaaataaacataaggaatcaaacattcaaattaagcctttttttaatt 51388185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 30547902 - 30547739
Alignment:
Q  63 aaactcaatatcatgttg-taaagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||||||||||| | || ||||||||| |||||||| ||| | || ||| |||| ||||| |||||||||||| ||||| ||| ||||| ||||    
T  30547902 aaactcaatatcatgttgctgaatggactaacttattccaacatgacttacatttcggaccaacttaaaacctttaaaaagtaagggaccaacttaaaac 30547803  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    |||||||||||||  ||||||  || ||  ||||||||||||| | |||| ||||| |||||||||    
T  30547802 ttttaaaacataagcgaccaaccta-aaattaaaataaacataagagatc-aacatgcaattaagc 30547739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 33419704 - 33419592
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||||||||| |   ||| |||||||| ||| ||| ||||||||||||| |||| |||||||||| ||||||||||||| ||| ||||| ||||    
T  33419704 aaactcaatatcatgtcgcggaagagactaacttatttcaatgtgagtaacgttttggaccaacttgaaacttttaaaacgtaagggaccaacttaaaac 33419605  T
Q  161 ttttaaaacataa 173  Q
    |||||||| ||||    
T  33419604 ttttaaaagataa 33419592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 226
Target Start/End: Original strand, 48618751 - 48618895
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||| ||||||| |||||||||| | ||| |||| |||| ||||| ||| ||||||||| |||||||| ||||| |||  ||| ||||||||  ||||||    
T  48618751 aaggaactaacttattccaacgtaaataaagttttggacaaactttaaaactttaaaacttaagagaccaacttaaaatgtttcaaacataagagaccaa 48618850  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     ||  | ||||||||||| ||| |||||||||||| |||||||||    
T  48618851 cttgaagcctaaaataaatataagggatcaaacatgcaattaagc 48618895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 48618616 - 48618502
Alignment:
Q  90 taactaattccaacgtgagtaacgtttgga-cgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaa 188  Q
    ||||| |||| || ||||||||||||| || | |||||||||   ||||||| ||||  || || || ||||||||||||||||||| ||||||||| ||    
T  48618616 taacttattctaatgtgagtaacgttttgaaccaacttgaaattgttaaaacataaggaaccaatttaaaacttttaaaacataaataaccaatttaaaa 48618517  T
Q  189 cctaaaataaacata 203  Q
    |||||||||||||||    
T  48618516 cctaaaataaacata 48618502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 30548004 - 30548124
Alignment:
Q  86 ggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaac--ttcaaacttttaaaacataaatgaccaat 182  Q
    ||||||||| ||| |||| |||||||||||| |||| |||||||||| ||||||||||||||||  |||  || |||||||||||| |||   ||||||     
T  30548004 ggactaacttatttcaacatgagtaacgttttggaccaacttgaaacttttaaaacgtaagagatcaacttttgaaacttttaaaagatatgggaccaac 30548103  T
Q  183 ttacaacctaaaataaacata 203  Q
    ||  |||||||||||||||||    
T  30548104 ttgaaacctaaaataaacata 30548124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 19541154 - 19541247
Alignment:
Q  133 tttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    ||||||| ||||| ||| ||||| |||| | ||||||||||| ||| || ||| |||| |||||||||||| |  ||||||||| |||||||||    
T  19541154 tttaaaatgtaagggaccaacttgaaacgtataaaacataaaagactaacttaaaaccaaaaataaacataagatatcaaacatgcaattaagc 19541247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 37285886 - 37285960
Alignment:
Q  151 aacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaag 225  Q
    ||||| |||||||||||| ||||  |||||| ||| ||||||||||||||||| || |  |||||| ||||||||    
T  37285886 aacttgaaacttttaaaatataagggaccaacttaaaacctaaaataaacatagggaactaaacatgcaattaag 37285960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 54111518 - 54111417
Alignment:
Q  123 acttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaatt 222  Q
    ||||||||| |||||||| |||  ||  ||||| |||||||||||||||||| || |||  || ||  ||||||| | ||| |||||||||||| |||||    
T  54111518 acttgaaacttttaaaacataaatgaacaacttaaaacttttaaaacataaaggatcaacataaaatgtaaaatacatataagggatcaaacatgcaatt 54111419  T
Q  223 aa 224  Q
    ||    
T  54111418 aa 54111417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 62997 - 63137
Alignment:
Q  87 gactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||||| ||||||| ||||||||||||| |||| ||| |||||| ||||||| ||||| ||| ||||| ||||||||||||||| || ||||||||||    
T  62997 gactaacttattccaaagtgagtaacgttttggaccaacctgaaacttttaaaatgtaagggaccaacttgaaacttttaaaacatgaaggaccaattta 63096  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     || |||||||||||||| |||||||||||| |||||||||    
T  63097 aaaactaaaataaacataagggatcaaacatgcaattaagc 63137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 62890 - 62725
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||| ||||||||| ||  ||| |||||||| ||||||||||||||||||||| |||| ||||| |||| ||||||||||||| || |||||| ||||    
T  62890 aaactccatatcatgtcgtggaagagactaacttattccaacgtgagtaacgttttggaccaacttaaaacttttaaaacgtaagggattaacttgaaac 62791  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    ||||||||||||   |||||| ||  ||  | ||||||| ||| |||||||| ||| |||||||||    
T  62790 ttttaaaacatacgagaccaacttgaaaattgaaataaatataagggatcaagcatgcaattaagc 62725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 83 - 226
Target Start/End: Complemental strand, 22566444 - 22566302
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||| | ||| ||||||||||||||||| |||| |||  ||||| ||||||||||||| ||| ||||| |||||||||||||||||  ||||||    
T  22566444 aagggactaatttatttcaacgtgagtaacgttttggaccaac--gaaacttttaaaacgtaagggaccaacttgaaacttttaaaacataagggaccaa 22566347  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    |||| || |||||||||||||| |||||||||||| |||||||||    
T  22566346 tttaaaaactaaaataaacataagggatcaaacatgcaattaagc 22566302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 83 - 234
Target Start/End: Original strand, 34535953 - 34536105
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacgtttg-gacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||||| |||||||||||||||||||||  ||  |||||||||| | ||||||||||||||| ||||| ||||||||||||  |||  ||||||    
T  34535953 aagggactaacttattccaacgtgagtaacgtttttgatcaacttgaaacttctaaaacgtaagagaccaacttaaaacttttaaaatgtaagggaccaa 34536052  T
Q  182 tttacaacctaaaataaacatatgggatcaaacatacaattaagctttatttt 234  Q
     ||| || |||| ||||||||| |||||||||||| ||||||| |||||||||    
T  34536053 cttaaaaactaagataaacataagggatcaaacatgcaattaaactttatttt 34536105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 36469808 - 36469947
Alignment:
Q  87 gactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||||| ||||||||||||||||| ||| |||| |||||||||| ||||||||||||| ||| ||||| ||||||||||||||  || |||||||||     
T  36469808 gactaacttattccaacgtgagtaacattttggaccaacttgaaacttttaaaacgtaagggaccaacttaaaacttttaaaacacgaaggaccaattt- 36469906  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     || |||||||||||||| | |||||||||| |||||||||    
T  36469907 gaaactaaaataaacataagagatcaaacatgcaattaagc 36469947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 63 - 224
Target Start/End: Original strand, 6376608 - 6376771
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||||||||| |   |||||||||||| |||  ||||||| |||||||| |||| ||||| ||| ||||||||||||||| || ||| | || |    
T  6376608 aaactcaatatcatgtcgcggaagggactaacttattttaacgtgaataacgttttggactaacttaaaaactttaaaacgtaagataccaacctaaagc 6376707  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    ||||||||||||||||||||| ||| |||||||||||||||||  ||||||||| | |||||||    
T  6376708 ttttaaaacataaatgaccaacttaaaacctaaaataaacataacggatcaaacttgcaattaa 6376771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 63 - 224
Target Start/End: Complemental strand, 34535855 - 34535695
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    |||||||||||||||| |   |||||||||||| |||||||  |||||||||||| |||| ||||| |||| ||||||||||||| ||| | ||| ||||    
T  34535855 aaactcaatatcatgtcgcggaagggactaacttattccaatatgagtaacgttttggaccaacttaaaacttttaaaacgtaagggaccagcttgaaac 34535756  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    |||||||||| |   |||||| ||| || |||||||||||||| |||||||||||| |||||||    
T  34535755 ttttaaaacaga---gaccaacttaaaaactaaaataaacataagggatcaaacatgcaattaa 34535695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 24185811 - 24185693
Alignment:
Q  83 aagggactaactaattccaacgtgagtaacg-tttggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaa 181  Q
    |||||||||||| ||| ||||||||||||   ||||||| ||||||||||||||||||| |||| ||| || || |||||||||||||||||| ||||||    
T  24185811 aagggactaacttatttcaacgtgagtaaatatttggaccaacttgaaacctttaaaacataagtgaccaa-ttaaaacttttaaaacataaaggaccaa 24185713  T
Q  182 tttacaacctaaaataaaca 201  Q
     ||  |||||||||||||||    
T  24185712 cttgaaacctaaaataaaca 24185693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 6376510 - 6376374
Alignment:
Q  82 aaagggactaactaattccaacgtgagtaacgtttggacg-aacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgacca 180  Q
    |||| |||||||| |||| || ||||| ||||||| ||   |||||||||| |||||||| |||| ||| ||||| ||||||||||||||||||  ||||    
T  6376510 aaagagactaacttattcaaatgtgagaaacgttttgaatcaacttgaaacttttaaaacctaagggaccaacttaaaacttttaaaacataaagaacca 6376411  T
Q  181 atttacaacctaaaataaacatatgggatcaaacata 217  Q
    | ||| |||||||||||||||||  ||| ||||||||    
T  6376410 acttaaaacctaaaataaacataaaggaccaaacata 6376374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 87 - 225
Target Start/End: Complemental strand, 48461931 - 48461793
Alignment:
Q  87 gactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||| | |||| |||||||||||||||| |||  ||||| | || ||||||||||||||||| ||||| |||||||||||||||||| || ||| |||    
T  48461931 gactaatttattctaacgtgagtaacgttttggatcaacttcatacttttaaaacgtaagagaccaacttaaaacttttaaaacataaaggatcaactta 48461832  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaag 225  Q
     || |||||| ||||||| | |||| ||||| ||||||||    
T  48461831 aaaactaaaacaaacataagagatc-aacatgcaattaag 48461793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 10017903 - 10018005
Alignment:
Q  122 aacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaat 221  Q
    |||||||||| ||||||||  || |||| ||||  |||||||||||||||||  |||||| ||| ||||||||||||||||| | || ||||||||||||    
T  10017903 aacttgaaacttttaaaacaaaatagacgaactgaaaacttttaaaacataagagaccaacttaaaacctaaaataaacataagagaccaaacatacaat 10018002  T
Q  222 taa 224  Q
    |||    
T  10018003 taa 10018005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 7460682 - 7460580
Alignment:
Q  114 tttggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaa 213  Q
    ||||||| |||||||||  ||||||||||||| ||| ||||| ||| |||||||||||||  || ||| ||  || |||||||||||||| |||||||||    
T  7460682 tttggaccaacttgaaatttttaaaacgtaagggaccaacttgaaatttttaaaacataagggatcaacttgaaaactaaaataaacataagggatcaaa 7460583  T
Q  214 cat 216  Q
    |||    
T  7460582 cat 7460580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 7460886 - 7460953
Alignment:
Q  157 aaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    ||||||||||||||||| ||||||| ||  || |||||||||||||| |||||||||||| |||||||    
T  7460886 aaacttttaaaacataagtgaccaacttgaaaactaaaataaacataagggatcaaacatgcaattaa 7460953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 43511189 - 43511262
Alignment:
Q  151 aacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    ||||| |||||||||||||||||| || ||  ||| ||| ||||||||||||| | ||||||||||||||||||    
T  43511189 aacttgaaacttttaaaacataaaagatcatcttaaaacttaaaataaacataagagatcaaacatacaattaa 43511262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 8560773 - 8560681
Alignment:
Q  82 aaagggactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataa 173  Q
    ||||||||||||| ||| ||| ||||||||||||| |||| ||| |||||| ||||||| ||| | ||| ||||| |||||||||||| ||||    
T  8560773 aaagggactaacttattacaatgtgagtaacgttttggaccaacatgaaacttttaaaatgtaggggaccaacttaaaacttttaaaatataa 8560681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 229
Target Start/End: Original strand, 48462066 - 48462210
Alignment:
Q  87 gactaactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||||| ||||||| | | ||||||||| |||  ||||| |||| |||||||| |||  ||| ||||| |||||||||||||||||  |||||| |||    
T  48462066 gactaacttattccaaggcgggtaacgttttggatcaacttaaaacttttaaaacataaatgaccaacttgaaacttttaaaacataagggaccaactta 48462165  T
Q  186 caacctaaaat-aaacatatgggatcaaacatacaattaagcttt 229  Q
     || ||||||| ||||||| | ||||||||||  |||||| ||||    
T  48462166 aaaactaaaataaaacataagagatcaaacatgtaattaaacttt 48462210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 7460819 - 7460913
Alignment:
Q  63 aaactcaatatcatgttgt-aaagggactaactaattccaacgtgagtaacg-tttggacgaacttgaaacctttaaaacgtaagagactaactt 155  Q
    |||||||||||||||| |  |||| |||||||| |||||||||||||||||| ||| ||| || ||||||| |||||||| |||| ||| |||||    
T  7460819 aaactcaatatcatgtcgcgaaagagactaacttattccaacgtgagtaacgttttagaccaatttgaaacttttaaaacataagtgaccaactt 7460913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 9997944 - 9998046
Alignment:
Q  122 aacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaat 221  Q
    |||||||||| |||||||| |||||||| ||||   ||| ||||||||||||  ||||||  || |||||| |||||||||| | || |||||||| |||    
T  9997944 aacttgaaacttttaaaacataagagacgaactaacaacatttaaaacataagggaccaacctaaaacctataataaacataagagaccaaacatataat 9998043  T
Q  222 taa 224  Q
    |||    
T  9998044 taa 9998046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 17814044 - 17813975
Alignment:
Q  157 aaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    |||||||||||||||||  |||||| ||  ||||||||||||||||| | ||||||||||  ||||||||    
T  17814044 aaacttttaaaacataagagaccaacttgaaacctaaaataaacataagagatcaaacatggaattaagc 17813975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 24188208 - 24188283
Alignment:
Q  151 aacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    ||||| ||||| |||||||||||  |||||| ||  ||||||| ||||||||| | |||||||||| |||||||||    
T  24188208 aacttgaaactcttaaaacataagggaccaacttgaaacctaatataaacataagcgatcaaacatgcaattaagc 24188283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 63 - 224
Target Start/End: Complemental strand, 16642914 - 16642751
Alignment:
Q  63 aaactcaatatcatgttgta-aagggactaactaattccaacgtgagtaacgtttg-gacgaacttgaaacctttaaaacgtaagagactaacttcaaac 160  Q
    ||||||||||||||||   | ||| |||||||| ||||||||||| |||||||||  ||| |||||||||||||||||||| ||||||| ||||| |||     
T  16642914 aaactcaatatcatgtgacagaagagactaacttattccaacgtgcgtaacgttttagaccaacttgaaacctttaaaacgcaagagaccaacttgaaat 16642815  T
Q  161 ttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
     ||||||||||||  |||||| ||| ||||||||||||||||| |||||||||| | |||||||    
T  16642814 atttaaaacataagggaccaacttaaaacctaaaataaacataagggatcaaacttgcaattaa 16642751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 82 - 226
Target Start/End: Original strand, 33992604 - 33992749
Alignment:
Q  82 aaagggactaactaattccaacgtgagtaacgtttgga-cgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgacca 180  Q
    ||||||| ||||| |||||||| |||||||||||| || | || || |||| |||||||||||||  || || || |||||||||||||||||| |||||    
T  33992604 aaagggattaacttattccaacatgagtaacgttttgaaccaatttaaaacttttaaaacgtaaggaaccaatttaaaacttttaaaacataaaggacca 33992703  T
Q  181 atttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    ||||| || |||||||||||||| |||||||||||| |||||||||    
T  33992704 atttaaaaactaaaataaacataagggatcaaacatgcaattaagc 33992749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 33992474 - 33992334
Alignment:
Q  87 gactaactaattccaacgtgagtaacgtttgga-cgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattta 185  Q
    |||||||| ||| |||||||| |||||||| || | |||||||||| ||||||||||||| ||| || || |||||| ||||||||||  ||| || ||     
T  33992474 gactaacttatttcaacgtgaataacgttttgaaccaacttgaaacttttaaaacgtaagggaccaatttaaaacttataaaacataagggacgaacttg 33992375  T
Q  186 caacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
     || |||||||||||||| |||||||||||| |||||||||    
T  33992374 aaaactaaaataaacataagggatcaaacatgcaattaagc 33992334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 32291104 - 32291155
Alignment:
Q  122 aacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataa 173  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||||||||||    
T  32291104 aacttaaaacctttaaaacgtaagagactaactttaaatttttaaaacataa 32291155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 19328548 - 19328409
Alignment:
Q  86 ggactaactaattccaacgtgagtaacgtttg-gacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaattt 184  Q
    ||||||||  ||| |||||| ||||||||||  ||| ||||| |||  || |||| |||||| | |||| | ||| |||||||| ||||| |||||| ||    
T  19328548 ggactaacatatttcaacgtcagtaacgttttagaccaactttaaattttgaaaatgtaagaaattaacataaaatttttaaaatataaaggaccaactt 19328449  T
Q  185 acaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    | || |||||||||||||| |||||||| ||| |||||||    
T  19328448 aaaaactaaaataaacataagggatcaatcatgcaattaa 19328409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 25508082 - 25508216
Alignment:
Q  91 aactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaac 189  Q
    |||||||| ||| ||||||||||||| |||| ||||| ||||    ||||  |||  ||| ||||| |||||||||||||||||  || ||| ||| |||    
T  25508082 aactaattgcaatgtgagtaacgttttggaccaacttaaaactaaaaaaatataaaggacgaacttgaaacttttaaaacataagggagcaacttaaaac 25508181  T
Q  190 ctaaaataaacatatgggatcaaacatacaattaa 224  Q
    ||||||| ||| || |||| ||||||| |||||||    
T  25508182 ctaaaatcaacttaagggaccaaacatgcaattaa 25508216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 16643055 - 16643128
Alignment:
Q  151 aacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaa 224  Q
    ||||| |||||||||||| ||||| ||||||  || ||||||||||| || || | || |||||||||||||||    
T  16643055 aacttgaaacttttaaaatataaaggaccaacataaaacctaaaatacacgtaagagaccaaacatacaattaa 16643128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 19935544 - 19935433
Alignment:
Q  114 tttggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaa 213  Q
    ||||||| |||||||| | |||||||| | || ||| ||||| ||| || ||||||||||  |||||| ||| |||| |||||||||||| | || | ||    
T  19935544 tttggaccaacttgaa-cttttaaaacatcagggaccaacttgaaatttataaaacataatggaccaacttaaaaccaaaaataaacataagagacccaa 19935446  T
Q  214 catacaattaagc 226  Q
    ||| |||||||||    
T  19935445 catgcaattaagc 19935433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 9888 - 9986
Alignment:
Q  128 aaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    |||| |||||||||||||  |  | ||| |||||||||||||||||  |||||| ||| ||||||||||||||||| | |||||||||| |||||||||    
T  9888 aaacttttaaaacgtaagcaatcatcttgaaacttttaaaacataagagaccaacttaaaacctaaaataaacataagagatcaaacatgcaattaagc 9986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 9669 - 9578
Alignment:
Q  135 taaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    ||||||||||| ||| || || |||||||||||||||||  |||||  ||| ||  ||||||||||||| | ||||||||||  ||||||||    
T  9669 taaaacgtaagggaccaatttgaaacttttaaaacataagggaccatcttaaaaattaaaataaacataagagatcaaacatggaattaagc 9578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 10531 - 10629
Alignment:
Q  128 aaacctttaaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    |||| |||||||||||||  |  | ||| |||||||||||||||||  |||||| ||| ||||||||||||||||| | |||||||||| |||||||||    
T  10531 aaacttttaaaacgtaagcaatcatcttgaaacttttaaaacataagagaccaacttaaaacctaaaataaacataagagatcaaacatgcaattaagc 10629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 10312 - 10221
Alignment:
Q  135 taaaacgtaagagactaacttcaaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    ||||||||||| ||| || || |||||||||||||||||  |||||  ||| ||  ||||||||||||| | ||||||||||  ||||||||    
T  10312 taaaacgtaagggaccaatttgaaacttttaaaacataagggaccatcttaaaaattaaaataaacataagagatcaaacatggaattaagc 10221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 47420 - 47489
Alignment:
Q  157 aaacttttaaaacataaatgaccaatttacaacctaaaataaacatatgggatcaaacatacaattaagc 226  Q
    |||||||||||||||||  |||||| ||| ||||||||||||||||| |||| ||||||| |||||||||    
T  47420 aaacttttaaaacataagcgaccaacttaaaacctaaaataaacataagggaccaaacatgcaattaagc 47489  T

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Target: scaffold0074 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 23903 - 23984
Alignment:
Q  91 aactaattccaacgtgagtaacgttt-ggacgaacttgaaacctttaaaacgtaagagactaacttcaaacttttaaaacat 171  Q
    |||| |||||||| | |||||||||| |||| || |  ||||||||||||  ||||||| |||||| |||||||||||||||    
T  23903 aacttattccaacataagtaacgttttggaccaattcaaaacctttaaaatataagagaataacttaaaacttttaaaacat 23984  T

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