View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9484_low_17 (Length: 428)
Name: NF9484_low_17
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Original strand, 41134146 - 41134547
Alignment:
| Q |
17 |
aattgggagacagattatttgcaactgctagtatggatattcaagaagaaagttcctccacctttggacctttggcagcaatgagtttaaggaatatgtc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41134146 |
aattgggagacagattatttgcaactgctagtatggatattcaagaagaaagttcctccacctttggacctttggcagcaatgagtttaaggaatatgtc |
41134245 |
T |
|
| Q |
117 |
ttcgtcgtcttcggctttcttttcagccaatcagtcaccgtttttctctccaagaacgtcatcgtgtcatttatcggatattttgagacctgaagcttca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41134246 |
ttcgtcgtcttcggctttcttttcagccaatcagtcaccgtttttctctccaagaacgtcatcgtgtcatttatcggatactttgagacctgaagcttca |
41134345 |
T |
|
| Q |
217 |
aatgacagaattcatctagatgctgctgctgctgcttccactagcacaagttcagtggttccagaacaaaaatgtactatctctgatgtggctgctgcgt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41134346 |
aatgacagaattcatctagatgctgctgctgctgcttccactagcacaagttcagtggttccagaacaaaaatgttctatctctgatgtggctgctgcgt |
41134445 |
T |
|
| Q |
317 |
ctccagctgcctgtaattcaggtgatatgcagagactcgaccgtatatcttcctcggcaggtatctctagtagcaccatatctggttactgccatcccta |
416 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41134446 |
ctccagctgcctgtacttcaggtgatatgcagagactcgaccgtatatcttcctcggtaggtatctctagtagcaccatatctggttactgccatcccta |
41134545 |
T |
|
| Q |
417 |
tg |
418 |
Q |
| |
|
|| |
|
|
| T |
41134546 |
tg |
41134547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University