View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9484_low_19 (Length: 423)
Name: NF9484_low_19
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 7882419 - 7882830
Alignment:
| Q |
1 |
tcatcattctccagctctaatttcacaagcacaaagcttccacttccaaggtctcaattttcaattctaccaaccattcaaaatgttgaacaaaacatga |
100 |
Q |
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| T |
7882419 |
tcatcgttcaccagctctaatttcacaagcacaaagcttccacttccaaggtctcaattttcaattctaccaaccattcaaaatgttgaacaaaacatga |
7882518 |
T |
|
| Q |
101 |
gtctccatttactctcttccaagaaacctctctacctttcatccactcaaaattttgcattgctaacaaaacccaaaagaaagaatgtgacagaatgtca |
200 |
Q |
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| T |
7882519 |
gtctccctttactctcttccaagaaacctctctacctttcatccactcaaaattttgcattgctaacaaaacccaaaagaaagaatgtgacagaatgtca |
7882618 |
T |
|
| Q |
201 |
agcctatgaggctgatagatcaagaccactagagattaacattgaacttcctagtgaagaagcagctcaaaagcttaagattggattgtattttgctact |
300 |
Q |
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| T |
7882619 |
agcctatgaggctgatagatcaagaccactagagattaacattgaacttcctagtgaagaagcagctcaaaagcttaagattggattgtattttgctact |
7882718 |
T |
|
| Q |
301 |
tggtgggctttgaatgttgttttcaacatatacaacaagaaagttttgaatgcttttccttacccttggcttacttccactttgtccttagctgctggtt |
400 |
Q |
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| T |
7882719 |
tggtgggctttgaatgttgttttcaacatatacaacaagaaagttttgaatgcttttccttacccttggcttacttccactttgtccttagctgctggtt |
7882818 |
T |
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| Q |
401 |
ctctcatgatgt |
412 |
Q |
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| T |
7882819 |
ctctcatgatgt |
7882830 |
T |
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Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 260 - 421
Target Start/End: Original strand, 54984783 - 54984944
Alignment:
| Q |
260 |
aagcagctcaaaagcttaagattggattgtattttgctacttggtgggctttgaatgttgttttcaacatatacaacaagaaagttttgaatgcttttcc |
359 |
Q |
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||||||||||||| || || ||||| ||||||||||| || ||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||| |
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| T |
54984783 |
aagcagctcaaaaactcaaaattggtttgtattttgcaacatggtgggctttgaatgtggttttcaatatttacaacaagaaggttttgaatgcttttcc |
54984882 |
T |
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| Q |
360 |
ttacccttggcttacttccactttgtccttagctgctggttctctcatgatgtccatctcat |
421 |
Q |
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||| |||||||||||||||||||||||| | ||||||||||||||||| |||| ||||||| |
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| T |
54984883 |
ttatccttggcttacttccactttgtcccttgctgctggttctctcatcatgttaatctcat |
54984944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 289 - 374
Target Start/End: Original strand, 18395113 - 18395198
Alignment:
| Q |
289 |
tattttgctacttggtgggctttgaatgttgttttcaacatatacaacaagaaagttttgaatgcttttccttacccttggcttac |
374 |
Q |
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| T |
18395113 |
tattttgcaacttggtgggctttgaatgttgtgtttaatatttacaacaagaaggttttgaatgcttacccttacccttggcttac |
18395198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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