View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9484_low_2 (Length: 716)
Name: NF9484_low_2
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 134 - 424
Target Start/End: Original strand, 38314468 - 38314758
Alignment:
| Q |
134 |
tatttttctgtgaaagattcctcaatcccccataattcaaattcaaattgtatcaagttcttccctctctactttttaaaatttgaatctctcaaaccct |
233 |
Q |
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| T |
38314468 |
tatttttctgtgaaagattcctcaatcccccataattcaaattcaaattgtatcaagttcttccctctctactttttaaaatttgaatctctcaaaccct |
38314567 |
T |
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| Q |
234 |
tatctcattccagtctcttttcttccctcttctttctcctaaccaaggtgcaggagtattatatgtggattatattttgaaagcaatgaagcatttagtt |
333 |
Q |
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| T |
38314568 |
tatctcattccagtctcttttcttccctcttctttctcctaaccaaggtgcaggagtattatatgtggattatattttgaaagcaatgaagcatttagtt |
38314667 |
T |
|
| Q |
334 |
attcaaacattttttctttctactatttttacttgccacactcttctaatcttaatttttgtttaatacatttcacttcttatgactaatt |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38314668 |
attcaaacattttttctttctactatttttacttgccacactcttctaatcttaatttttgtttaatacatttcactttttatgactaatt |
38314758 |
T |
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Back To:
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Target: chr7 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 45479643 - 45479519
Alignment:
| Q |
12 |
agcagagagcatcttttccatacattctatatttgacctactgctacttttttaggaatctttctttatactccttcaaaactgtacaacaaaaacaggt |
111 |
Q |
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|||||||| |||||||| |||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45479643 |
agcagagatcatctttttcatacattttatatttgagctactgctactttttcaggaatctttctttatactccttcaaaactgtacaacaaaaacaggt |
45479544 |
T |
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| Q |
112 |
tgtatgattcctcaacttcacctat |
136 |
Q |
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| T |
45479543 |
tgtatgattcctcaacttcacctat |
45479519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 565
Target Start/End: Complemental strand, 36846933 - 36846858
Alignment:
| Q |
487 |
ttcttttattatttggctaatgtaagttcactagcagcagaagcattgaagaagttccccattggagattgattatgat |
565 |
Q |
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||||||| |||||||||| |||| |||||||||||| |||||||| ||| |||||| |||||||||||||||||| |
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| T |
36846933 |
ttcttttcttatttggctctggtaatttcactagcagcggaagcattcaag---ttccccgttggagattgattatgat |
36846858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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