View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9484_low_20 (Length: 413)

Name: NF9484_low_20
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9484_low_20
NF9484_low_20
[»] chr8 (3 HSPs)
chr8 (16-403)||(10582688-10583082)
chr8 (283-354)||(14266466-14266537)
chr8 (283-347)||(25887691-25887755)
[»] chr2 (4 HSPs)
chr2 (283-337)||(30617108-30617162)
chr2 (283-354)||(12068507-12068577)
chr2 (282-347)||(30375746-30375811)
chr2 (282-354)||(30378903-30378975)
[»] chr4 (5 HSPs)
chr4 (285-354)||(33881286-33881355)
chr4 (286-354)||(23427369-23427437)
chr4 (283-354)||(51084222-51084293)
chr4 (301-354)||(52255722-52255775)
chr4 (283-354)||(54234138-54234207)
[»] chr3 (2 HSPs)
chr3 (306-354)||(4958038-4958086)
chr3 (283-328)||(9797966-9798011)
[»] chr1 (5 HSPs)
chr1 (283-354)||(2753485-2753556)
chr1 (283-354)||(13142376-13142447)
chr1 (283-354)||(22680657-22680728)
chr1 (283-337)||(42069847-42069901)
chr1 (283-328)||(12569777-12569822)
[»] chr7 (3 HSPs)
chr7 (283-337)||(5515673-5515727)
chr7 (301-354)||(21857767-21857820)
chr7 (283-354)||(5734414-5734485)
[»] chr6 (1 HSPs)
chr6 (283-354)||(17313892-17313963)
[»] chr5 (2 HSPs)
chr5 (283-354)||(5863414-5863485)
chr5 (283-354)||(10541468-10541539)
[»] scaffold1944 (1 HSPs)
scaffold1944 (282-354)||(826-898)
[»] scaffold1790 (1 HSPs)
scaffold1790 (282-354)||(967-1039)


Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 403
Target Start/End: Original strand, 10582688 - 10583082
Alignment:
Q  16 catatactctaacttgaataagcacaaaatacctcaaggacacaaatcaaaatatgtgcacaccaatttggatgtatacctttcaatgttaccttaccat 115  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10582688 catatactctaacttgaataagaacaaaatacctcaaggacacagatcaaaacatgtgcacaccaatttggatgtatacctttcaatgttaccttaccat 10582787  T
Q  116 ctattttgtgtttccccttgcacacttagttactacctattggtttaaaaatgaaacgagcatcaaccaaagtccaagtaccaattttctctagagtttt 215  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10582788 ctattttgtgtttccccttgcacactt-gttacaacctattggtttaaaaatgaaacgagcatcaaccaaagtccaagtaccaattttctctagagtttt 10582886  T
Q  216 taattcgatcttcattgaataaatccaacaatcatgcttggaagcttcctcggaggtctgttaatcatgcttaaataggacaggtctagttgaaaaaact 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  10582887 taattcgatcttcattgaataaatccaacaatcatgcttggaagcttcctcggaggtctgttaatcatgcttaaatagggtaggtctagttgaaaaaact 10582986  T
Q  316 aaagtctaagcctgacctattaatctgtcaaaggcttt-----aagc---gtctaaccttcttaaaagttcgttttgacatattagtctatctctg 403  Q
    ||||||||||||||||||||||||||||||||||||||     ||||   |||||||||||||||||||||||| |||| ||||||||||||||||    
T  10582987 aaagtctaagcctgacctattaatctgtcaaaggctttatatgaagcctggtctaaccttcttaaaagttcgttctgacctattagtctatctctg 10583082  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 14266537 - 14266466
Alignment:
Q  283 tgcttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctattaatctgtcaaaggcttta 354  Q
    |||||||||||| |||| ||||||||||||| |||||||||||||| |||| |||  |||||||||||||||    
T  14266537 tgcttaaataggtcaggcctagttgaaaaaattaaagtctaagcctcacctcttagcctgtcaaaggcttta 14266466  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 25887691 - 25887755
Alignment:
Q  283 tgcttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctattaatctgtcaaa 347  Q
    |||||||||| | ||| ||||||  |||||| ||||| ||||| |||| ||||||||||||||||    
T  25887691 tgcttaaatatgtcagatctagtgaaaaaaattaaagcctaagtctgatctattaatctgtcaaa 25887755  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 337
Target Start/End: Original strand, 30617108 - 30617162
Alignment:
Q  283 tgcttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctatta 337  Q
    |||||||||||| |||| ||||||||||||||||||| |||||||||||||||||    
T  30617108 tgcttaaataggccaggcctagttgaaaaaactaaagcctaagcctgacctatta 30617162  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 12068507 - 12068577
Alignment:
Q  283 tgcttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctattaatctgtcaaaggcttta 354  Q
    ||||||||||||  ||| ||||||||||||||||||| |||||||| |||| ||   |||||||||||||||    
T  12068507 tgcttaaataggctaggcctagttgaaaaaactaaagcctaagccttacct-tttgcctgtcaaaggcttta 12068577  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 30375811 - 30375746
Alignment:
Q  282 atgcttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctattaatctgtcaaa 347  Q
    ||||||||||||| |  | |||||||||||||||||||  |||||||| ||||||| ||| |||||    
T  30375811 atgcttaaataggtcgagcctagttgaaaaaactaaagcttaagcctggcctattagtctatcaaa 30375746  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 30378975 - 30378903
Alignment:
Q  282 atgcttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctattaatctgtcaaaggcttta 354  Q
    ||||||||||||| |  | ||||||||||||||||||   ||||||||||||||||   ||||||| ||||||    
T  30378975 atgcttaaataggtcgagcctagttgaaaaaactaaaacttaagcctgacctattagcttgtcaaatgcttta 30378903  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 354
Target Start/End: Complemental strand, 33881355 - 33881286
Alignment:
Q  285 cttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctattaatctgtcaaaggcttta 354  Q
    |||||||||| |||| ||||||||||||||||||| ||||| ||| | ||||| ||||||||||||||||    
T  33881355 cttaaataggtcaggcctagttgaaaaaactaaaggctaagtctggcatattagtctgtcaaaggcttta 33881286  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 23427437 - 23427369
Alignment:
Q  286 ttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctattaatctgtcaaaggcttta 354  Q
    ||||||||| |||| ||||||||||||||||||||||||| |||| ||||||   ||||||||||||||    
T  23427437 ttaaataggtcaggcctagttgaaaaaactaaagtctaagtctgatctattagcatgtcaaaggcttta 23427369  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 51084222 - 51084293
Alignment:
Q  283 tgcttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctattaatctgtcaaaggcttta 354  Q
    |||||||||||| | || ||||||||||||||||||| |||||||||  ||||||   ||||||||||||||    
T  51084222 tgcttaaataggccgggcctagttgaaaaaactaaagcctaagcctgggctattagcatgtcaaaggcttta 51084293  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 52255775 - 52255722
Alignment:
Q  301 ctagttgaaaaaactaaagtctaagcctgacctattaatctgtcaaaggcttta 354  Q
    |||||||||||||||||||  |||| ||| ||||||| ||||||||||||||||    
T  52255775 ctagttgaaaaaactaaagcttaagtctggcctattagtctgtcaaaggcttta 52255722  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 54234138 - 54234207
Alignment:
Q  283 tgcttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctattaatctgtcaaaggcttta 354  Q
    |||||||||||| |||| |||||||||||||||  ||| |||||||| || ||||   ||||||||||||||    
T  54234138 tgcttaaataggtcaggcctagttgaaaaaact--agtataagcctgccccattagcatgtcaaaggcttta 54234207  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 4958086 - 4958038
Alignment:
Q  306 tgaaaaaactaaagtctaagcctgacctattaatctgtcaaaggcttta 354  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  4958086 tgaaaaaattaaagtctaagcctgacctattagtctgtcaaaggcttta 4958038  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 9797966 - 9798011
Alignment:
Q  283 tgcttaaataggacaggtctagttgaaaaaactaaagtctaagcct 328  Q
    ||||||||||||  ||| ||||||||||||||||||| ||||||||    
T  9797966 tgcttaaataggctaggcctagttgaaaaaactaaagcctaagcct 9798011  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 2753556 - 2753485
Alignment:
Q  283 tgcttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctattaatctgtcaaaggcttta 354  Q
    |||||||||| | |||| ||||||||||||||||||| |||| ||||||||||||  || ||||||||||||    
T  2753556 tgcttaaatatgtcaggcctagttgaaaaaactaaagcctaaacctgacctattagcctctcaaaggcttta 2753485  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 13142376 - 13142447
Alignment:
Q  283 tgcttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctattaatctgtcaaaggcttta 354  Q
    |||||||||||| |||| ||||||||||||| ||||| ||||||||| |||||||  || |||| |||||||    
T  13142376 tgcttaaataggtcaggcctagttgaaaaaattaaagcctaagcctggcctattagcctatcaatggcttta 13142447  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 22680657 - 22680728
Alignment:
Q  283 tgcttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctattaatctgtcaaaggcttta 354  Q
    ||||||||||||  ||  ||||| |||||||| |||||||||| ||| |||||||  |||||||||||||||    
T  22680657 tgcttaaataggctagacctagtcgaaaaaaccaaagtctaagtctggcctattagcctgtcaaaggcttta 22680728  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 337
Target Start/End: Complemental strand, 42069901 - 42069847
Alignment:
Q  283 tgcttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctatta 337  Q
    ||||||||||   ||||| |||||||||||||||||||||||| ||||| |||||    
T  42069901 tgcttaaataaatcaggtttagttgaaaaaactaaagtctaagtctgacatatta 42069847  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 12569822 - 12569777
Alignment:
Q  283 tgcttaaataggacaggtctagttgaaaaaactaaagtctaagcct 328  Q
    ||||||||||||  ||| ||||||||||||||||| ||||||||||    
T  12569822 tgcttaaataggctaggcctagttgaaaaaactaaggtctaagcct 12569777  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 337
Target Start/End: Complemental strand, 5515727 - 5515673
Alignment:
Q  283 tgcttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctatta 337  Q
    |||||||||||| |||  |||||||||||||||||||||||||||| || |||||    
T  5515727 tgcttaaataggtcagacctagttgaaaaaactaaagtctaagcctaacttatta 5515673  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 21857820 - 21857767
Alignment:
Q  301 ctagttgaaaaaactaaagtctaagcctgacctattaatctgtcaaaggcttta 354  Q
    |||||| |||||||||||| ||||| |||||||||||  ||||||||| |||||    
T  21857820 ctagttaaaaaaactaaagcctaagtctgacctattagcctgtcaaagacttta 21857767  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 5734485 - 5734414
Alignment:
Q  283 tgcttaaataggacaggtctagttgaaaaaactaaagtctaag-cctgacctattaatctgtcaaaggcttta 354  Q
    ||||||||||||| ||||||||||||||||| ||| | ||||| | |||||| || | |||||||||||||||    
T  5734485 tgcttaaataggataggtctagttgaaaaaattaaggcctaagtcttgacct-tttacctgtcaaaggcttta 5734414  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 17313892 - 17313963
Alignment:
Q  283 tgcttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctattaatctgtcaaaggcttta 354  Q
    ||||||||||||  ||| |||||||||||||||||||  |||| |||||||||||   ||||||||| ||||    
T  17313892 tgcttaaataggttaggcctagttgaaaaaactaaagcgtaagtctgacctattagcttgtcaaaggtttta 17313963  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 5863485 - 5863414
Alignment:
Q  283 tgcttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctattaatctgtcaaaggcttta 354  Q
    |||||||||||| |||| ||||||||||||| ||||| |||||| ||| ||||||   |||||||| |||||    
T  5863485 tgcttaaataggtcaggcctagttgaaaaaaataaagcctaagcttgatctattagcttgtcaaagacttta 5863414  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 10541468 - 10541539
Alignment:
Q  283 tgcttaaataggacaggtctagttgaaaaaactaaagtctaagcc-tgacctattaatctgtcaaaggcttta 354  Q
    ||||||||||||  ||| ||||||||||||||||| | ||||||| |||||| ||| | ||||||||||||||    
T  10541468 tgcttaaataggctaggcctagttgaaaaaactaaggcctaagccttgaccttttact-tgtcaaaggcttta 10541539  T

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Target: scaffold1944 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1944
Description:

Target: scaffold1944; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 826 - 898
Alignment:
Q  282 atgcttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctattaatctgtcaaaggcttta 354  Q
    ||||||||||||| |  |||||||||||||||||||||  |||| ||| ||||||| |||  |||| ||||||    
T  826 atgcttaaataggtcgagtctagttgaaaaaactaaagcttaagtctggcctattagtctaacaaatgcttta 898  T

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Target: scaffold1790 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1790
Description:

Target: scaffold1790; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 967 - 1039
Alignment:
Q  282 atgcttaaataggacaggtctagttgaaaaaactaaagtctaagcctgacctattaatctgtcaaaggcttta 354  Q
    ||||||||||||| |  |||||||||||||||||||||  |||| ||| ||||||| |||  |||| ||||||    
T  967 atgcttaaataggtcgagtctagttgaaaaaactaaagcttaagtctggcctattagtctaacaaatgcttta 1039  T

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