View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9484_low_21 (Length: 408)
Name: NF9484_low_21
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 29966405 - 29966203
Alignment:
| Q |
6 |
ctcagctaatgataaatttttaaaattgatggagtttttta-ggtgaatcaaactattcagtactatgaaaacaccacttccaatatttcctctaatcaa |
104 |
Q |
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| T |
29966405 |
ctcagctaatgataaatttttaaaattgatggagttttttatggtgaatcaaactattcagtactatgaaaacactacttccaatatttcctctaatcaa |
29966306 |
T |
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| Q |
105 |
attatttatttgttcctctaatttctagaattttaggcatcgcttatgttataattgcatgaaaatctgtatttatactttcacaacctaaaagttgttt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29966305 |
attatttatttgttcctctaatttctagaattttaggcatcccttatgttataattgcatgaaaatctgtatttatactttcacaacctaaaagttgtct |
29966206 |
T |
|
| Q |
205 |
tga |
207 |
Q |
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||| |
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| T |
29966205 |
tga |
29966203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 30008393 - 30008595
Alignment:
| Q |
6 |
ctcagctaatgataaatttttaaaattgatggagtttttta-ggtgaatcaaactattcagtactatgaaaacaccacttccaatatttcctctaatcaa |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30008393 |
ctcagctaatgataaatttttaaaattgatggagttttttatggtgaatcaaactattcagtactatgaaaacactacttccaatatttcctctaatcaa |
30008492 |
T |
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| Q |
105 |
attatttatttgttcctctaatttctagaattttaggcatcgcttatgttataattgcatgaaaatctgtatttatactttcacaacctaaaagttgttt |
204 |
Q |
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| T |
30008493 |
attatttatttgttcctctaatttctagaattttaggcatcccttatgttataattgcatgaaaatctgtatttatactttcacaacctaaaagttgtct |
30008592 |
T |
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| Q |
205 |
tga |
207 |
Q |
| |
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||| |
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| T |
30008593 |
tga |
30008595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 218 - 389
Target Start/End: Complemental strand, 29965886 - 29965715
Alignment:
| Q |
218 |
aaccagtgaactaattcttcataccatggtcaacctgatgtcataggttgaattagcactctatgacaactttnnnnnnntcagttacaagttatttgaa |
317 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| |
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| T |
29965886 |
aaccagtgaactaattcttcataccattgtgaacctgatgtcataggttgaattagcactctatgacaaatttaagaaaatcagttacaagttagttgaa |
29965787 |
T |
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| Q |
318 |
aatagtggaccggattatcactttaattattggaataactgatcatatacataaacacttgtatgataaaca |
389 |
Q |
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| T |
29965786 |
aatagtggaccggattatcactttaattattggaataactgatcatatacataaacacttgtatgataaaca |
29965715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 218 - 389
Target Start/End: Original strand, 30008912 - 30009083
Alignment:
| Q |
218 |
aaccagtgaactaattcttcataccatggtcaacctgatgtcataggttgaattagcactctatgacaactttnnnnnnntcagttacaagttatttgaa |
317 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| |
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| T |
30008912 |
aaccagtgaactaattcttcataccattgtgaacctgatgtcataggttgaattagcactctatgacaaatttaagaaaatcagttacaagttagttgaa |
30009011 |
T |
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| Q |
318 |
aatagtggaccggattatcactttaattattggaataactgatcatatacataaacacttgtatgataaaca |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30009012 |
aatagtggaccggattatcactttaattattggaataactgatcatatacataaacacttgtatgataaaca |
30009083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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