View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9484_low_23 (Length: 390)
Name: NF9484_low_23
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 3202251 - 3202606
Alignment:
| Q |
18 |
acatcagcaattggattgaaagcttcatcttcaccattcaaaagtatcatagcagcaccaccagcatctttaactgcttgacctttggctactctttcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202251 |
acatcagcaattggattgaaagcttcatcttcaccattcaaaagtatcatagcagcaccaccagcatctttaactgcttgacctttggctactctttcaa |
3202350 |
T |
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| Q |
118 |
ccgatccatcttgctcacacactactacctttcccttaacatcaacattctccatggaaaaaggattacaaaaggcaatgaaatcatcacttgtgttaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202351 |
ccgatccatcttgctcacacactactacctttcccttaacatcaacattctccatggaaaaaggattacaaaaggcaatgaaatcatcacttgtgttaat |
3202450 |
T |
|
| Q |
218 |
tgcacctgcatacacaagtggcaataatgctgatgcaaagtcttttggttggaaaactgattctccgagatattccgtcccatccccaagcttagctact |
317 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202451 |
tgcacctgcatacacaagtggcaataatgttgatgcaaagtcttttggttggaaaactgattctccgagatattccgtcccatccccaagcttagctact |
3202550 |
T |
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| Q |
318 |
gcctctatttttctgtcaattgtgctggcaccaacagttaaaatccatggtgcttc |
373 |
Q |
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| T |
3202551 |
gcctctatttttctgtcaattgtgctggcaccaacagttaaaatccatggtgcttc |
3202606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 3208225 - 3208580
Alignment:
| Q |
18 |
acatcagcaattggattgaaagcttcatcttcaccattcaaaagtatcatagcagcaccaccagcatctttaactgcttgacctttggctactctttcaa |
117 |
Q |
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||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
3208225 |
acatcagcaattggattgaaatcttcaccttcactgttcaaaagtatcatagcagcaccaccggcatctttaactgcttgacctttggctactcttccaa |
3208324 |
T |
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| Q |
118 |
ccgatccatcttgctcacacactactacctttcccttaacatcaacattctccatggaaaaaggattacaaaaggcaatgaaatcatcacttgtgttaat |
217 |
Q |
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| T |
3208325 |
caaacccaccttgctcacacacaactatttttcccttaacatcaaccttcttcatggcaataggaccacaaaaggcaatggaatcatcacttgtattaat |
3208424 |
T |
|
| Q |
218 |
tgcacctgcatacacaagtggcaataatgctgatgcaaagtcttttggttggaaaactgattctccgagatattccgtcccatccccaagcttagctact |
317 |
Q |
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|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||| |
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| T |
3208425 |
tgaacctgcatacacaagtggcaataatgtcgatgcaaagtcttttggttggaaaactgattctccaagatattctgtcccgtcgccaagcttagctact |
3208524 |
T |
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| Q |
318 |
gcctctatttttctgtcaattgtgctggcaccaacagttaaaatccatggtgcttc |
373 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3208525 |
gcctcaatttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttc |
3208580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 75 - 373
Target Start/End: Original strand, 3216221 - 3216519
Alignment:
| Q |
75 |
ccaccagcatctttaactgcttgacctttggctactctttcaaccgatccatcttgctcacacactactacctttcccttaacatcaacattctccatgg |
174 |
Q |
| |
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|||||||| ||||||||||||||| |||| ||| || | ||| |||| ||| |||||||| |||||||||||||||||||||| |||| ||||| |
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| T |
3216221 |
ccaccagcgtctttaactgcttgagctttcgctgcttgtgaaacaagtccaccttcctcacacaaaactacctttcccttaacatcaatgttcttcatgg |
3216320 |
T |
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| Q |
175 |
aaaaaggattacaaaaggcaatgaaatcatcacttgtgttaattgcacctgcatacacaagtggcaataatgctgatgcaaagtcttttggttggaaaac |
274 |
Q |
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||| |||| ||||||||||||| ||| ||||||| | |||| | ||||||||||||||||||||| | || ||||||||| ||||||||||| || || |
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| T |
3216321 |
aaataggaccacaaaaggcaatggaattatcacttatattaacagaacctgcatacacaagtggcaacagtgttgatgcaaactcttttggttgaaacac |
3216420 |
T |
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| Q |
275 |
tgattctccgagatattccgtcccatccccaagcttagctactgcctctatttttctgtcaattgtgctggcaccaacagttaaaatccatggtgcttc |
373 |
Q |
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||||||||| | ||||| ||| | ||||| ||||||| ||| ||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||| |
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| T |
3216421 |
tgattctccaatatatttttccccgttgccaagtttagctattgcttctatttttctatcagttgtgctagcaccaacagttagaatccatggtgcttc |
3216519 |
T |
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