View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9484_low_27 (Length: 372)
Name: NF9484_low_27
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 359
Target Start/End: Complemental strand, 23936395 - 23936053
Alignment:
| Q |
16 |
aaaagagcactatatagttcatacccagcttgcacaacccattttcactggctcatacagctgccaaagttttaaattgtacatagaggatataagtaac |
115 |
Q |
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| T |
23936395 |
aaaagagcactatatagttcatacccagcttgcacaacccattttcactggctcatacagctgccaaagttttaaattgtacatagaggatataagtaac |
23936296 |
T |
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| Q |
116 |
nnnnnnncaataggaaaaacgttgtgataagtgacaactaagagtgagagggcaaagacaaagagaatgaatgagaagatgttcgaaatgtgcagatata |
215 |
Q |
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| T |
23936295 |
aaaaaa-caataggaaaaacgttgtgataagtgacaactaagagtgagagagcaaagacaaagagaatgaatgagaagatgttcgaaatatgaagatata |
23936197 |
T |
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| Q |
216 |
aaagatattaagtgcatgtttgataccacattattttgcttttcttgcgtccctagaagcttaaagcataatttgtttatgatattttaaaggtacaaat |
315 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23936196 |
aaagatattaagtgcatgtttgataccacgttattctgcttttcttgcgtccctagaagcttaaagcataatttggctatgatattttaaaggtacaaat |
23936097 |
T |
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| Q |
316 |
tggatattcaattgaccatacagtgttaatccattccgacgcag |
359 |
Q |
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| T |
23936096 |
tggatattcaattgaccatacagtgttaatccattccaacgcag |
23936053 |
T |
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