View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9484_low_29 (Length: 371)
Name: NF9484_low_29
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 78 - 353
Target Start/End: Original strand, 18754030 - 18754305
Alignment:
| Q |
78 |
atggatacatggagtatacggtgttccttcatctatgcattagagaatttcaatatgcagggatgatggtatggtcgaaaatatagaagcacatcaaagc |
177 |
Q |
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| T |
18754030 |
atggatacatggagtatatagtgttccttcatctatgcattagagaatttcaatatggagggatgatggtatggtcgaaaatatagaagcagatcaaagc |
18754129 |
T |
|
| Q |
178 |
tattttctggctgaagtaaatcaggtcacaaagaagacctttgagtaaaatttggcaaacattgcaccatgctacaatgtagagtttggttacactgacc |
277 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| | |
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| T |
18754130 |
tattttctggctgaagtaaatcaggtcacaaagaaaacctttgagtaaaatttggcaaacattgcaccatgctacaatctagagtttggtcacactgaac |
18754229 |
T |
|
| Q |
278 |
aaactaatgtaagttttgtaaggctacatcctactcatggtttcatgtgggaaagggaaatgccaaactcagagtt |
353 |
Q |
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| T |
18754230 |
aaactaatgtaagttttgtaaggctacatcctactcatggtttcatgtgggaaaggtaaatgccaaacacagagtt |
18754305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 99 - 333
Target Start/End: Complemental strand, 21378879 - 21378645
Alignment:
| Q |
99 |
tgttccttcatctatgcattagagaatttcaatatgcagggatgatggtatggtcgaaaatatagaagcacatcaaagctattttctggctgaagtaaat |
198 |
Q |
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|||||| |||||||||||| ||||| || |||| || |||||||||| |||||| |||||||| | |||| ||||||| | |||||| ||| |||| ||| |
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| T |
21378879 |
tgttccgtcatctatgcatcagagagttgcaatctggagggatgatgatatggttgaaaatattggagcagatcaaagtttttttcttgctaaagttaat |
21378780 |
T |
|
| Q |
199 |
caggtcacaaagaagacctttgagtaaaatttggcaaacattgcaccatgctacaatgtagagtttggttacactgaccaaactaatgtaagttttgtaa |
298 |
Q |
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| T |
21378779 |
caagtcacaaggaaaacctttgagaaaaatttggcaaatattgtgccatgttcttttgcagaatctggttgcactgactagacagatgtgagttatgtaa |
21378680 |
T |
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| Q |
299 |
ggctacatcctactcatggtttcatgtgggaaagg |
333 |
Q |
| |
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|||| || || |||||||||||||||||||||||| |
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| T |
21378679 |
ggcttcaccccactcatggtttcatgtgggaaagg |
21378645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 20063416 - 20063493
Alignment:
| Q |
40 |
ccatcgaaagctaattttaacttgcttttgggaagggaatggatacatggagtatacggtgttccttcatctatgcat |
117 |
Q |
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||||| ||||| || |||||||||||||| ||||||||||| ||||||||| | || | ||||||||||||||||| |
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| T |
20063416 |
ccatcaaaagcaaactttaacttgcttttaggaagggaatgcatacatggaattggcgttattccttcatctatgcat |
20063493 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 38 - 248
Target Start/End: Complemental strand, 16052726 - 16052515
Alignment:
| Q |
38 |
taccatcgaaagctaattttaacttgcttttgggaagggaatggatacatggagtatacggtgttccttcatctatgcattagagaatttcaatatgcag |
137 |
Q |
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|||||||||||||||| || |||||||| ||||||| ||||||||||||||| || ||| ||||||||||||||||| | || || | ||| | || |
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| T |
16052726 |
taccatcgaaagctaacttcaacttgctcttgggaaaagaatggatacatggaataggtggttttccttcatctatgcatcaaaggatctaaatcttgag |
16052627 |
T |
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| Q |
138 |
ggatgatggtatggtcgaaaatatagaagcacatcaaagcta-ttttctggctgaagtaaatcaggtcacaaagaagacctttgagtaaaatttggcaaa |
236 |
Q |
| |
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||||||||| |||||||||||||| || ||| ||||||| | |||| | | |||||||||||| ||||||| ||||| ||| || |||| ||||||| |
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| T |
16052626 |
ggatgatggcatggtcgaaaatattgaggcagatcaaagtaactttttttgatgaagtaaatcaagtcacaagaaagacgttttagaaaaacctggcaaa |
16052527 |
T |
|
| Q |
237 |
cattgcaccatg |
248 |
Q |
| |
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||||| ||||| |
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| T |
16052526 |
tattgcgccatg |
16052515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 13277429 - 13277345
Alignment:
| Q |
32 |
tggtgataccatcgaaagctaattttaacttgcttttgggaagggaatggatacatggagtatacggtgttccttcatctatgca |
116 |
Q |
| |
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||||| ||||||| |||| ||| ||||||||||| |||||||| ||||| ||||||||| || | |||||||||||||||||| |
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| T |
13277429 |
tggtggtaccatcaaaagataactttaacttgctcttgggaagagaatgcatacatggaataggggctgttccttcatctatgca |
13277345 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 58 - 335
Target Start/End: Complemental strand, 16165303 - 16165026
Alignment:
| Q |
58 |
aacttgcttttgggaagggaatggatacatggagtatacggtgttccttcatctatgcattagagaatttcaatatgcagggatgatggtatggtcgaaa |
157 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||| || | |||||||||||||||||| ||||| || ||| | ||| ||||||||||||| |||| |
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| T |
16165303 |
aacttgctcttaggaagagaatggatacatggaataagtgttgttccttcatctatgcaccagagagttgtaatctagaggaatgatggtatggttgaaa |
16165204 |
T |
|
| Q |
158 |
atatagaagcacatcaaagctattttctggctgaagtaaatcaggtcacaaagaagacctttgagtaaaatttggcaaacattgcaccatgctacaatgt |
257 |
Q |
| |
|
|||| || ||| ||||| |||||||| | ||| || ||||| ||||||| ||| | ||| ||| | ||||||| ||| ||||||| ||||| | ||| |
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| T |
16165203 |
atattgaggcaggtcaaatttattttcttgttgaggtcaatcaagtcacaaggaaaatcttagagaagaatttggaaaatattgcactatgctcctctgt |
16165104 |
T |
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| Q |
258 |
agagtttggttacactgaccaaactaatgtaagttttgtaaggctacatcctactcatggtttcatgtgggaaaggga |
335 |
Q |
| |
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|| |||||| || |||||||| |||| |||| ||||||||| || | | |||| ||||||||||||||||| |
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| T |
16165103 |
tgaagatggttataccgaccaaacagatgtgagttctgtaaggctccaccaaatccatgacttcatgtgggaaaggga |
16165026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 194
Target Start/End: Complemental strand, 20246540 - 20246386
Alignment:
| Q |
40 |
ccatcgaaagctaattttaacttgcttttgggaagggaatggatacatggagtatacggtgttccttcatctatgcattagagaatttcaatatgcaggg |
139 |
Q |
| |
|
|||||||||||||| || |||||| | || ||||| |||||||| ||||| || |||||| ||||| |||||| | ||||||||||| || || | |
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| T |
20246540 |
ccatcgaaagctaacttcaacttgttgttaggaagagaatggattcatgggataggtattgttccctcatccatgcatcaaagaatttcaatttgaagag |
20246441 |
T |
|
| Q |
140 |
atgatggtatggtcgaaaatatagaagcacatcaaagctattttctggctgaagt |
194 |
Q |
| |
|
||||||||| |||||||| || || || | |||||||||||||| |||||||| |
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| T |
20246440 |
atgatggtacagtcgaaaacattgaggctaaccaaagctattttcttgctgaagt |
20246386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 194
Target Start/End: Complemental strand, 22140524 - 22140370
Alignment:
| Q |
40 |
ccatcgaaagctaattttaacttgcttttgggaagggaatggatacatggagtatacggtgttccttcatctatgcattagagaatttcaatatgcaggg |
139 |
Q |
| |
|
|||||||||||||| || |||||| | || ||||| |||||||| ||||| || |||||| ||||| |||||| | ||||||||||| || || | |
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| T |
22140524 |
ccatcgaaagctaacttcaacttgttgttaggaagagaatggattcatgggataggtattgttccctcatccatgcatcaaagaatttcaatttgaagag |
22140425 |
T |
|
| Q |
140 |
atgatggtatggtcgaaaatatagaagcacatcaaagctattttctggctgaagt |
194 |
Q |
| |
|
||||||||| |||||||| || || || | |||||||||||||| |||||||| |
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|
| T |
22140424 |
atgatggtacagtcgaaaacattgaggctaaccaaagctattttcttgctgaagt |
22140370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 14929986 - 14929901
Alignment:
| Q |
163 |
gaagcacatcaaagctattttctggctgaagtaaatcaggtcacaaagaagacctttgagtaaaatttggcaaacattgcaccatg |
248 |
Q |
| |
|
|||||| ||||||| || ||||| |||||||| ||| | |||||| ||||||||||||| ||| ||||||||| || |||||||| |
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| T |
14929986 |
gaagcagatcaaagttactttcttgctgaagtcaataatttcacaaggaagacctttgagaaaagtttggcaaaaatagcaccatg |
14929901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 19886032 - 19886079
Alignment:
| Q |
288 |
aagttttgtaaggctacatcctactcatggtttcatgtgggaaaggga |
335 |
Q |
| |
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||||| |||||| | |||||| |||||||||||||||||||||||||| |
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|
| T |
19886032 |
aagttctgtaagacaacatccaactcatggtttcatgtgggaaaggga |
19886079 |
T |
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