View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9484_low_32 (Length: 360)
Name: NF9484_low_32
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 29552892 - 29552555
Alignment:
| Q |
1 |
ggccaatccagatttcaaagcttcatttattatagcctcagtatctgatttccaccattcacctaaacaaaattgaaaattgtaaggtttatgaaccatg |
100 |
Q |
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| T |
29552892 |
ggccaatccagatttcaaagcttcatttattatagcctcagtatctgatttccaccattcacctaaacaaaattgaaaattgtaaggtttatgaaccatg |
29552793 |
T |
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| Q |
101 |
atccctataccatttnnnnnnnnnnncactctatgaattgatgtatttattagcaaaaaatataaaggaaaaggtagaagaacaaactcaatatgataac |
200 |
Q |
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| T |
29552792 |
atccctataccatttaaaaaaaaa---actctatgaagtgatgtatttattagcaaaaaatataaaggaaaaggtagaagaactaactcaatatgataac |
29552696 |
T |
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| Q |
201 |
ttgttccatgtggggtctaggaaaagggtaaggaactccaagcttaggcaaaatgacaatagcaccatgtacagttgctctaagccaaagtatatgtgca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29552695 |
ttgttccatgtggggtctaggaaaagggtaaggaactccaagcttaggcaaaatgacaatagcaccatgtacagttgctctaagccaaagtatatgtgca |
29552596 |
T |
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| Q |
301 |
tgccaccaaagtgttcctctttgtcctgtgagggtaaaatt |
341 |
Q |
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| T |
29552595 |
tgccaccaaagtgttcctctttgtcctgtgagggtaaaatt |
29552555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 338
Target Start/End: Complemental strand, 35054065 - 35053971
Alignment:
| Q |
244 |
ttaggcaaaatgacaatagcaccatgtacagttgctctaagccaaagtatatgtgcatgccaccaaagtgttcctctttgtcctgtgagggtaaa |
338 |
Q |
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| T |
35054065 |
ttaggcaaaatgacaatagcaccatgcattgtagcccttagccaagtgatatgtgcatgccatagaagtgtgcctctttgacctgtaatggtaaa |
35053971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 338
Target Start/End: Complemental strand, 35070377 - 35070283
Alignment:
| Q |
244 |
ttaggcaaaatgacaatagcaccatgtacagttgctctaagccaaagtatatgtgcatgccaccaaagtgttcctctttgtcctgtgagggtaaa |
338 |
Q |
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| T |
35070377 |
ttaggcaaaatgacaatagcaccatgcattgtagcccttagccaagtgatatgtgcatgccatagaagtgtgcctctttgacctgtaatggtaaa |
35070283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 196 - 329
Target Start/End: Complemental strand, 25091732 - 25091599
Alignment:
| Q |
196 |
ataacttgttccatgtggggtctaggaaaagggtaaggaactccaagcttaggcaaaatgacaatagcaccatgtacagttgctctaagccaaagtatat |
295 |
Q |
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| T |
25091732 |
ataacttgttccatatgtggtttgggaaaagggtaaggaactccaagcttaggtaaaatgactatggcaccatggacagtagccctaagccaaaggacat |
25091633 |
T |
|
| Q |
296 |
gtgcatgccaccaaagtgttcctctttgtcctgt |
329 |
Q |
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| T |
25091632 |
gagcatgccaccaaagtgtgcctctttggcctgt |
25091599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 25091889 - 25091821
Alignment:
| Q |
2 |
gccaatccagatttcaaagcttcatttattatagcctcagtatctgatttccaccattcacctaaacaa |
70 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25091889 |
gccaatccagatttcaaagcttcatttattatagcctcagtatctgatttccaccattcacctaaacaa |
25091821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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