View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9484_low_34 (Length: 354)

Name: NF9484_low_34
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9484_low_34
NF9484_low_34
[»] chr6 (18 HSPs)
chr6 (9-350)||(11121579-11121920)
chr6 (13-267)||(9513371-9513626)
chr6 (150-261)||(24316925-24317035)
chr6 (100-261)||(720532-720694)
chr6 (92-266)||(22427882-22428056)
chr6 (107-261)||(5474385-5474540)
chr6 (141-255)||(15559262-15559374)
chr6 (180-253)||(22794011-22794084)
chr6 (142-249)||(1122588-1122694)
chr6 (56-220)||(31737831-31737993)
chr6 (135-261)||(24177909-24178036)
chr6 (170-260)||(4986075-4986164)
chr6 (170-227)||(8838979-8839035)
chr6 (119-224)||(22514179-22514284)
chr6 (144-229)||(19429962-19430048)
chr6 (119-192)||(18899263-18899336)
chr6 (181-258)||(21609368-21609443)
chr6 (203-243)||(24178512-24178552)
[»] chr7 (14 HSPs)
chr7 (16-267)||(21292488-21292738)
chr7 (92-261)||(7792623-7792798)
chr7 (142-267)||(24648641-24648765)
chr7 (56-267)||(15456059-15456268)
chr7 (170-267)||(13576335-13576431)
chr7 (170-267)||(8922913-8923010)
chr7 (141-267)||(7489151-7489277)
chr7 (184-261)||(37573101-37573178)
chr7 (111-267)||(37809579-37809730)
chr7 (135-224)||(38737614-38737705)
chr7 (160-224)||(6616641-6616705)
chr7 (170-254)||(21497220-21497304)
chr7 (152-224)||(46808678-46808750)
chr7 (229-267)||(37572940-37572978)
[»] chr4 (23 HSPs)
chr4 (109-261)||(2191498-2191651)
chr4 (92-254)||(29688570-29688732)
chr4 (100-263)||(34851206-34851368)
chr4 (149-267)||(10564850-10564967)
chr4 (91-222)||(19327285-19327417)
chr4 (141-253)||(23492958-23493069)
chr4 (135-267)||(18885234-18885367)
chr4 (142-261)||(21505703-21505820)
chr4 (149-267)||(37010235-37010353)
chr4 (100-260)||(1206796-1206957)
chr4 (135-267)||(24600661-24600793)
chr4 (176-267)||(22310271-22310362)
chr4 (179-267)||(34446327-34446415)
chr4 (135-229)||(19585460-19585554)
chr4 (149-261)||(25125186-25125300)
chr4 (150-267)||(18376341-18376457)
chr4 (9-43)||(19327192-19327226)
chr4 (9-49)||(29688789-29688829)
chr4 (144-224)||(36316603-36316683)
chr4 (144-224)||(36330812-36330892)
chr4 (56-161)||(22310363-22310468)
chr4 (9-43)||(37010465-37010499)
chr4 (119-224)||(27020628-27020733)
[»] chr3 (23 HSPs)
chr3 (144-261)||(586942-587059)
chr3 (101-261)||(9152444-9152605)
chr3 (99-261)||(53619182-53619342)
chr3 (91-267)||(27081017-27081194)
chr3 (170-261)||(46028613-46028704)
chr3 (170-267)||(636992-637089)
chr3 (93-226)||(28311832-28311966)
chr3 (175-267)||(22243276-22243368)
chr3 (141-267)||(4546032-4546159)
chr3 (144-267)||(11618530-11618651)
chr3 (159-234)||(1545102-1545177)
chr3 (176-266)||(25899516-25899606)
chr3 (157-224)||(22402016-22402083)
chr3 (157-224)||(28414467-28414534)
chr3 (157-224)||(33952038-33952105)
chr3 (192-257)||(24095169-24095234)
chr3 (144-224)||(3336352-3336432)
chr3 (160-224)||(4062794-4062858)
chr3 (160-224)||(37968787-37968851)
chr3 (207-254)||(1576394-1576441)
chr3 (170-229)||(23687319-23687377)
chr3 (170-229)||(24059556-24059614)
chr3 (9-45)||(28311733-28311769)
[»] chr1 (25 HSPs)
chr1 (100-261)||(15852993-15853154)
chr1 (100-261)||(32830185-32830346)
chr1 (135-267)||(19050311-19050443)
chr1 (101-267)||(18525818-18525983)
chr1 (149-261)||(5965417-5965529)
chr1 (179-267)||(1609439-1609527)
chr1 (150-267)||(41809180-41809300)
chr1 (170-267)||(11332374-11332471)
chr1 (170-267)||(11490395-11490492)
chr1 (157-267)||(32433474-32433585)
chr1 (59-254)||(10399230-10399435)
chr1 (99-254)||(1345187-1345340)
chr1 (170-261)||(9090172-9090263)
chr1 (155-267)||(9885986-9886098)
chr1 (135-228)||(52838823-52838920)
chr1 (170-254)||(14589471-14589558)
chr1 (157-224)||(45541075-45541142)
chr1 (161-231)||(12437860-12437929)
chr1 (150-224)||(28641940-28642014)
chr1 (170-228)||(40214299-40214357)
chr1 (145-224)||(8110303-8110383)
chr1 (157-224)||(2027424-2027490)
chr1 (119-192)||(18414177-18414250)
chr1 (144-224)||(41401509-41401590)
chr1 (135-198)||(6946589-6946653)
[»] chr8 (12 HSPs)
chr8 (92-261)||(3735912-3736083)
chr8 (110-267)||(3941347-3941504)
chr8 (141-259)||(26899362-26899478)
chr8 (13-232)||(11958821-11959048)
chr8 (183-237)||(26936734-26936788)
chr8 (175-267)||(5323266-5323357)
chr8 (170-267)||(17648144-17648239)
chr8 (149-267)||(8776727-8776847)
chr8 (141-230)||(27287231-27287319)
chr8 (142-227)||(30238909-30238995)
chr8 (150-224)||(39618267-39618341)
chr8 (141-229)||(29959627-29959716)
[»] scaffold0014 (1 HSPs)
scaffold0014 (109-267)||(15738-15900)
[»] chr5 (11 HSPs)
chr5 (101-261)||(6763908-6764063)
chr5 (85-267)||(16044702-16044885)
chr5 (100-261)||(17110479-17110640)
chr5 (109-261)||(29731235-29731382)
chr5 (193-267)||(869791-869866)
chr5 (157-224)||(39561314-39561381)
chr5 (149-267)||(17197375-17197491)
chr5 (149-260)||(6363274-6363385)
chr5 (170-224)||(5808728-5808782)
chr5 (160-224)||(16484557-16484621)
chr5 (160-224)||(22494865-22494929)
[»] chr2 (15 HSPs)
chr2 (142-267)||(9894171-9894295)
chr2 (135-267)||(12528522-12528653)
chr2 (59-267)||(31078675-31078881)
chr2 (91-267)||(9160589-9160766)
chr2 (135-261)||(27544695-27544822)
chr2 (179-267)||(30750330-30750418)
chr2 (141-256)||(19378341-19378456)
chr2 (206-267)||(4032130-4032190)
chr2 (150-236)||(4160094-4160181)
chr2 (135-225)||(18747419-18747508)
chr2 (207-260)||(31615243-31615296)
chr2 (135-199)||(19813693-19813757)
chr2 (101-183)||(30750502-30750582)
chr2 (197-262)||(6409023-6409088)
chr2 (9-42)||(30750669-30750702)
[»] scaffold0204 (1 HSPs)
scaffold0204 (135-267)||(13969-14100)
[»] scaffold0115 (1 HSPs)
scaffold0115 (110-254)||(17001-17145)
[»] scaffold0256 (1 HSPs)
scaffold0256 (119-224)||(4410-4515)


Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 350
Target Start/End: Original strand, 11121579 - 11121920
Alignment:
Q  9 tttcgtgttgacgatcgattcattcaccaaacttttaacccgattaatagaattgtttaggtttgaatctattttatggatcattttttatgttttgcct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  11121579 tttcgtgttgacgatcgattcattcaccaaacttttaacccgattaatagaattgtttaggtttggatctattttatggatcattttttatgttttgccc 11121678  T
Q  109 gttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattaga 208  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11121679 gttagggttgttgactgggtcaattgttatgtccccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattaga 11121778  T
Q  209 gtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttatnnnnnnnnngtttgtgcattacactttcatggtttttagaa 308  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||| ||    
T  11121779 gtagggtaccaacttagttggacactattctttttgatgtcattttgctcttgacttataaaaaaaaagtttgtgcattacactttcatggtttttaaaa 11121878  T
Q  309 gcttgcgtcgatgttggttttgattaagtatatttttatttt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11121879 gcttgcgtcgatgttggttttgattaagtatatttttatttt 11121920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 9513371 - 9513626
Alignment:
Q  13 gtgttgacgatcgattcattcaccaaacttttaacccg------attaatagaattgtttaggtttgaatctattttatggatcattttttatgttttgc 106  Q
    ||||||||||||||||||||| |||||||||  |||||      |||  || ||||||||||  ||| | | | ||||||||||||||||| | ||||||    
T  9513371 gtgttgacgatcgattcattcgccaaactttagacccgtgcttaattgttataattgtttagcgttggacccactttatggatcattttttgt-ttttgc 9513469  T
Q  107 ctgttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaatta 206  Q
    | |||||||||||||||||| |||  | |||||| ||| || |||||||||||||||| |    ||| ||||||||||||||||||||||||||| |  |    
T  9513470 ccgttagggttgttgactgggtcaggttttatgtcccctcaatttttatgtaattttttt----ttttaataatatatatgagcaattgacaacagagga 9513565  T
Q  207 gagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    |||||  || ||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  9513566 gagtattgttccaacctagttggacactattctttttgatgtcattttgctcttgacttat 9513626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 24316925 - 24317035
Alignment:
Q  150 ttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtc 249  Q
    |||||||||||||||| || |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  24316925 ttttatgtaatttttc-ctttttttaataatatatatgagcaattgacaacaatttagagtagggtaccaacttagttggacactattctttttgatgtc 24317023  T
Q  250 attttgctcttg 261  Q
    |||| |||||||    
T  24317024 atttcgctcttg 24317035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 100 - 261
Target Start/End: Original strand, 720532 - 720694
Alignment:
Q  100 gttttgcctgttagggttgttgactggatcaattgttatgttcccccagttttta-tgtaatttttctctgttttcaataatatatatgagcaattgaca 198  Q
    |||||||| |||||||||||||||||| |||  | |||| | ||||||  ||||  |||||||||| ||| |||| |||||||||||||| |||||||||    
T  720532 gttttgcccgttagggttgttgactgggtcatgttttatttccccccaacttttcctgtaatttttttctttttttaataatatatatgaacaattgaca 720631  T
Q  199 acaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttg 261  Q
    ||| ||||||| ||||| ||||||||||||||||||||| ||||| |||||||||||||||||    
T  720632 acagattagagcagggtcccaacttagttggacactattcttttttatgtcattttgctcttg 720694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 92 - 266
Target Start/End: Complemental strand, 22428056 - 22427882
Alignment:
Q  92 ttttttatgttttgcctgttagggttg-ttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagc 190  Q
    ||||||||||||| || |||||||||| |||| ||| |||| | |||||| || | |||||| ||||||||| || || |||| ||||||||||||||||    
T  22428056 ttttttatgttttacccgttagggttgattgagtgggtcaagttttatgt-cctctagttttcatgtaatttatccctttttt-aataatatatatgagc 22427959  T
Q  191 aattgacaacaaattagagtagggtaccaacttagttggacactatt-atttttgatgtcattttgctcttgactta 266  Q
    ||||||||| | ||||||||||||  |||||||| ||||||||||||  ||||| |||||||||||| |||| ||||    
T  22427958 aattgacaaaatattagagtagggctccaacttaattggacactattctttttttatgtcattttgcccttgcctta 22427882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 107 - 261
Target Start/End: Original strand, 5474385 - 5474540
Alignment:
Q  107 ctgttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaatta 206  Q
    |||||||||||||||||||| |||  | |||||| |||||| | ||||| ||||||||  || |||| |||||||||||||||||||||  |||| || |    
T  5474385 ctgttagggttgttgactgggtcaggttttatgtccccccaatatttatataattttttcctttttttaataatatatatgagcaattggtaacatataa 5474484  T
Q  207 gagtagggtaccaacttagttggacactatt-atttttgatgtcattttgctcttg 261  Q
    || |||||| ||||||||||| |||||||||  ||||| |||||||||| ||||||    
T  5474485 gattagggttccaacttagtttgacactattctttttttatgtcatttttctcttg 5474540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 141 - 255
Target Start/End: Complemental strand, 15559374 - 15559262
Alignment:
Q  141 tcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatt 240  Q
    |||||| ||||||||| |||||| | || |||| ||||||||| ||||||||||| ||| | |||||||||||||||||||||||||||||||||||  |    
T  15559374 tccccccgtttttatgcaattttcccct-ttttaaataatata-atgagcaattggcaatagattagagtagggtaccaacttagttggacactattcgt 15559277  T
Q  241 tttgatgtcattttg 255  Q
    ||| ||||| |||||    
T  15559276 tttcatgtctttttg 15559262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 22794084 - 22794011
Alignment:
Q  180 tatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattt 253  Q
    |||||||||| ||||||||| | |||||| |||||||| ||||||||||||||||||| |||||||||||||||    
T  22794084 tatatatgagtaattgacaaaagattagattagggtacaaacttagttggacactattctttttgatgtcattt 22794011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 249
Target Start/End: Original strand, 1122588 - 1122694
Alignment:
Q  142 cccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattattt 241  Q
    |||| |||||||||||||| |||| || |||| ||||||||||||||| ||||| ||| | ||||||| |||||||| ||||| |||||||||||| |||    
T  1122588 cccctagtttttatgtaatgtttccctttttt-aataatatatatgagaaattggcaatagattagagcagggtacctacttatttggacactattcttt 1122686  T
Q  242 ttgatgtc 249  Q
    || |||||    
T  1122687 tttatgtc 1122694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 31737993 - 31737831
Alignment:
Q  56 tagaattgtttaggtttgaatctattttatggatcattttttatgttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttttat 155  Q
    |||||||||| ||| || |||| ||||  | |||| |||||||||||||||| | |||||||||||||||| |||  | |||||| |||||| |||||||    
T  31737993 tagaattgttcaggattaaatccatttggtagatctttttttatgttttgcccgctagggttgttgactgggtcaggttttatgtccccccaatttttat 31737894  T
Q  156 gtaatttt-tctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaa 220  Q
    |||||||| || || | || ||||  |||||||| |||||||||||| |||||| || ||||||||    
T  31737893 gtaattttctccct-tatttaata--atatatgaacaattgacaacatattagaatatggtaccaa 31737831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 261
Target Start/End: Original strand, 24177909 - 24178036
Alignment:
Q  135 ttatgttcccccagtttttatgtaattttt-ctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacac 233  Q
    |||||| |||| ||||| |||||||||||| |  |||||| |||||||||||| |||||||| ||| | ||||||||| | ||| |||||||||||  ||    
T  24177909 ttatgtccccctagtttatatgtaattttttcattgtttttaataatatatataagcaattggcaaaagattagagtaagttactaacttagttgggtac 24178008  T
Q  234 tattatttttgatgtcattttgctcttg 261  Q
    | || ||||| |||||| ||| ||||||    
T  24178009 tgttcttttttatgtcaatttactcttg 24178036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 260
Target Start/End: Original strand, 4986075 - 4986164
Alignment:
Q  170 ttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctctt 260  Q
    |||| ||||||||||||||  |||||||| |  |||||||||   |||||||||||||||||||||||  |||| |||||||||| |||||    
T  4986075 tttttaataatatatatgaataattgaca-ctgattagagtaacataccaacttagttggacactattcctttttatgtcattttactctt 4986164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 8839035 - 8838979
Alignment:
Q  170 ttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagtt 227  Q
    |||| ||||| || |||||||| ||||||| |||||||||||||||||||||||||||    
T  8839035 tttttaataaaatttatgagcatttgacaa-aaattagagtagggtaccaacttagtt 8838979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 22514284 - 22514179
Alignment:
Q  119 ttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtacc 218  Q
    ||||||||||||  | || ||| | ||||| |||||| ||||||||   | |||| ||||||||||||||||||||| |||   |||| |||||||||||    
T  22514284 ttgactggatcatattttttgtcctcccaggttttatataattttttcatttttttaataatatatatgagcaattggcaatcgattaaagtagggtacc 22514185  T
Q  219 aactta 224  Q
    ||||||    
T  22514184 aactta 22514179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 19430048 - 19429962
Alignment:
Q  144 cccagtttttatgtaatttttctc-tgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttgg 229  Q
    ||||| |||||| |||||||| || | |||| |||||||||||||||||| ||||||   ||||  |||||||||||||||| ||||    
T  19430048 cccaggttttatataatttttttcctttttttaataatatatatgagcaactgacaatcgattaatgtagggtaccaacttaattgg 19429962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 18899263 - 18899336
Alignment:
Q  119 ttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaa 192  Q
    ||||||||||||  | || ||| | ||||| |||||| |||||||| ||| |||| ||||||||||||||||||    
T  18899263 ttgactggatcatattttttgtcctcccagattttatataatttttttctttttttaataatatatatgagcaa 18899336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 21609368 - 21609443
Alignment:
Q  181 atatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctc 258  Q
    ||||||||||||||||||| |  ||| |||||| || ||||||| ||||  |||||| ||||||||||||||||||||    
T  21609368 atatatgagcaattgacaaaaggttaaagtagg-tagcaacttaattgggtactatt-tttttgatgtcattttgctc 21609443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 24178552 - 24178512
Alignment:
Q  203 attagagtagggtaccaacttagttggacactattattttt 243  Q
    ||||||| ||||||||||||||||||||||| ||| |||||    
T  24178552 attagagaagggtaccaacttagttggacaccattcttttt 24178512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 21292488 - 21292738
Alignment:
Q  16 ttgacgatcgattcattcaccaaacttttaacccgattaatagaattgtttaggtttgaatctattttatggatcattttttatgttttgcctgttaggg 115  Q
    ||||||||||||||||||  ||||||||  ||||  |||||||||||||||||| |   ||| | ||| |||||  |||||| ||||||||  |||| ||    
T  21292488 ttgacgatcgattcattcgtcaaactttagaccctcttaatagaattgtttagggtcagatccactttgtggat--ttttttttgttttgctcgttatgg 21292585  T
Q  116 ttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttc-aataatatatatgagcaattgacaacaaattagagtaggg 214  Q
    ||||||||||| |||  | | |||| |||| | |||||| |||||||||| || ||||  |||||||||||||| |||||||||| | ||||||||||||    
T  21292586 ttgttgactgggtcaggtttaatgtcccccaaatttttaagtaatttttcccttttttttaataatatatatgaacaattgacaatatattagagtaggg 21292685  T
Q  215 taccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    |||||||||||||| |||||||| |||||||| |||||||||||||| |||||    
T  21292686 taccaacttagttgaacactattctttttgatatcattttgctcttggcttat 21292738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 92 - 261
Target Start/End: Complemental strand, 7792798 - 7792623
Alignment:
Q  92 ttttttatgttttgcctgttagggttgttgactggatcaattgttatgttccccca--gtttttatgtaatttttc----tctgttttcaataatatata 185  Q
    |||||| | |||||||| ||||||||||||||||| |||  | |||||| ||||||  ||||||||||||||||||    | | |||| |||||||||||    
T  7792798 tttttttttttttgcctattagggttgttgactgggtcaggtcttatgtccccccacagtttttatgtaatttttccttttttttttttaataatatata 7792699  T
Q  186 tgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttg 261  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||    
T  7792698 tgagcaattggcaacaaattagagtagggtaccaacttagtttgacattattctttttgatgtcattttgctcttg 7792623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 142 - 267
Target Start/End: Original strand, 24648641 - 24648765
Alignment:
Q  142 cccccagtttttatgtaatttttctctgttttcaataata-tatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatt 240  Q
    |||| |||||||||||||||||| ||| ||||   ||||| |||||||||||||||||  | ||||||||||||||||||||||||||||||||||| ||    
T  24648641 ccccaagtttttatgtaatttttttcttttttt--taataatatatgagcaattgacacaagattagagtagggtaccaacttagttggacactattctt 24648738  T
Q  241 tttgatgtcattttgctcttgacttat 267  Q
    ||||||||||||||||||||| |||||    
T  24648739 tttgatgtcattttgctcttgccttat 24648765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 267
Target Start/End: Complemental strand, 15456268 - 15456059
Alignment:
Q  56 tagaattgtttaggtttgaatctattttatggatcattttttatgttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttttat 155  Q
    |||||||||||||| ||| | | | ||| |||||| |||||| | ||||||| |||||| ||||||||||| |||  | |||||| || |||||||||||    
T  15456268 tagaattgtttagggttgcacccactttgtggatcgttttttgt-ttttgcccgttaggattgttgactgggtcatgttttatgtcccaccagtttttat 15456170  T
Q  156 gtaatttttctct-gttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcatttt 254  Q
    ||||||||||| |  |||| ||||  |||||||||||||||  |||| |  | |||| ||| ||||| |||||| |||||||| ||||| ||||||||||    
T  15456169 gtaatttttctttcttttttaata--atatatgagcaattgggaacagaggaaagtatggttccaacctagttgcacactattcttttttatgtcatttt 15456072  T
Q  255 gctcttgacttat 267  Q
    ||||||| |||||    
T  15456071 gctcttggcttat 15456059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 170 - 267
Target Start/End: Original strand, 13576335 - 13576431
Alignment:
Q  170 ttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    |||| ||| ||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| ||||| |||| ||||| ||||||| ||||    
T  13576335 tttttaattatatatatgagcaattgacaaaagattagagtacggtaccaacttagttggacactattcttttttatgt-atttttctcttgatttat 13576431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 267
Target Start/End: Original strand, 8922913 - 8923010
Alignment:
Q  170 ttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    |||| ||||||||||||||||||||||||  ||||||||| ||| | ||||||||||||| || || | ||||| |||||| ||||||||||||||||    
T  8922913 ttttaaataatatatatgagcaattgacacaaaattagagcaggtttccaacttagttggccattaatcttttttatgtcaatttgctcttgacttat 8923010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 141 - 267
Target Start/End: Original strand, 7489151 - 7489277
Alignment:
Q  141 tcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatt 240  Q
    ||||||||||||||| ||||||| |  | |||| ||||||||||||||||||||||||  | ||||||||||  |||||||||| || |||  |  | ||    
T  7489151 tcccccagtttttatataattttcccttttttttaataatatatatgagcaattgacattagattagagtagaataccaacttaattagacgttcctctt 7489250  T
Q  241 tttgatgtcattttgctcttgacttat 267  Q
    ||| ||||||||||||| |||||||||    
T  7489251 ttttatgtcattttgcttttgacttat 7489277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 261
Target Start/End: Complemental strand, 37573178 - 37573101
Alignment:
Q  184 tatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttg 261  Q
    ||||| |||||||||||| | |||||||||||||||||||||||| ||| | || ||||||||||||||| |||||||    
T  37573178 tatgatcaattgacaacagaatagagtagggtaccaacttagttgaacattgttctttttgatgtcatttagctcttg 37573101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 267
Target Start/End: Original strand, 37809579 - 37809730
Alignment:
Q  111 tagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttc-aataatatatatgagcaattgacaacaaattagag 209  Q
    |||||||||||||||  |||| | ||| || || | | |||||||||||||||| | | ||||  ||||||||||||||| |||||  |||||| || ||    
T  37809579 tagggttgttgactgagtcaaattttacgtccctctaatttttatgtaatttttttttcttttttaataatatatatgagtaattggtaacaaagtaaag 37809678  T
Q  210 tagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    ||     || |||||||||||||||||| ||||| ||||||||||||| |||||||||    
T  37809679 ta-----ccgacttagttggacactattcttttttatgtcattttgct-ttgacttat 37809730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 38737614 - 38737705
Alignment:
Q  135 ttatgttcccccagtttttatgtaatttttctctgttttc--aataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    |||||| |||| | |||||||||||||||||| | ||||   |||||||  |||||||| ||||||| | ||||||||||||||||||||||    
T  38737614 ttatgtccccctaatttttatgtaatttttctttatttttttaataatacttatgagcatttgacaaaagattagagtagggtaccaactta 38737705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 6616705 - 6616641
Alignment:
Q  160 tttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    ||||| ||| |||| |||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  6616705 tttttttctttttttaataatatatatgagcaactgacaatcgattaaagtagggtaccaactta 6616641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 21497220 - 21497304
Alignment:
Q  170 ttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcatttt 254  Q
    |||| |||||||| || | ||| ||||||| ||||||||||| |||||||||||||||| |  ||| | ||||| ||||||||||    
T  21497220 tttttaataatatttacgtgcatttgacaaaaaattagagtatggtaccaacttagttgaaagctaatcttttttatgtcatttt 21497304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 46808750 - 46808678
Alignment:
Q  152 ttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    |||| ||||||||  || |||| ||||||||||||||||||||| |||   |||| |||||||||||||||||    
T  46808750 ttatataattttttcctttttttaataatatatatgagcaattggcaatcgattaaagtagggtaccaactta 46808678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 37572978 - 37572940
Alignment:
Q  229 gacactattatttttgatgtcattttgctcttgacttat 267  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  37572978 gacactattctttttgatgtcattttgctcttggcttat 37572940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 109 - 261
Target Start/End: Complemental strand, 2191651 - 2191498
Alignment:
Q  109 gttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaa-taatatatatgagcaattgacaacaaattag 207  Q
    |||||||||||||||||| |||  | |||||| |||| | ||||  |||||||||| ||| |||| || ||||||||||||||||||||||||| |||||    
T  2191651 gttagggttgttgactgggtcaggttttatgtcccccaacttttcctgtaatttttttctttttttaaataatatatatgagcaattgacaacagattag 2191552  T
Q  208 agtagggtaccaacttagttggacactattatttttgatgtcattttgctcttg 261  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  2191551 agtagggtcccaacttagttggacactattattttttatgtcattttgctcttg 2191498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 92 - 254
Target Start/End: Complemental strand, 29688732 - 29688570
Alignment:
Q  92 ttttttatgttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagca 191  Q
    ||||||||||||| ||  |||||||||||||||||||||    ||||||| ||| |||||||| ||||||||||||| |||| ||||||||||| ||| |    
T  29688732 ttttttatgtttttccctttagggttgttgactggatcatgaattatgtttccctagtttttaagtaatttttctctttttttaataatatatacgagta 29688633  T
Q  192 attgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcatttt 254  Q
    |||||| |||||||| |||||||| |||||||||||| || ||||| ||||||||||||||||    
T  29688632 attgacgacaaattaaagtagggtgccaacttagttgaactctattctttttgatgtcatttt 29688570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 100 - 263
Target Start/End: Complemental strand, 34851368 - 34851206
Alignment:
Q  100 gttttgcctgttagggttgttgactggatcaattgttatgttcccccagttttta-tgtaatttttctctgttttcaataatatatatgagcaattgaca 198  Q
    |||||||| |||| ||||||||||||| |||  | |||||| ||||||||||||  |||||||||| | | |||| ||||||||||||||||||||||||    
T  34851368 gttttgcccgttaaggttgttgactgggtcaggttttatgtccccccagttttttctgtaattttttt-tctttt-aataatatatatgagcaattgaca 34851271  T
Q  199 acaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgac 263  Q
    |||||||||| |||||| |||||||||||||||||| || ||||| |||||||||||||||||||    
T  34851270 acaaattagaatagggtcccaacttagttggacactgttcttttttatgtcattttgctcttgac 34851206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 10564967 - 10564850
Alignment:
Q  149 tttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgt 248  Q
    ||||||||||||||||  || |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | || |||||    
T  10564967 tttttatgtaattttta-ctttttttaataatatatatgagcaattgacaacagattagagtagggtaccaacttagttggactctattctattggatgt 10564869  T
Q  249 cattttgctcttgacttat 267  Q
    || |||||||||| |||||    
T  10564868 cactttgctcttggcttat 10564850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 19327285 - 19327417
Alignment:
Q  91 attttttatgttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttt-tatgtaatttttctctgttttcaataatatatatgag 189  Q
    |||||||||||||||||  ||||||||||||||||| |||  | |||||| |||| | |||| |||||||||||||||| |||| |||||||||||||||    
T  19327285 attttttatgttttgcccattagggttgttgactggttcaggttttatgtcccccaatttttatatgtaatttttctctttttttaataatatatatgag 19327384  T
Q  190 caattgacaacaaattagagtagggtaccaact 222  Q
    |||||||||| | ||||||||||||| ||||||    
T  19327385 caattgacaatatattagagtagggttccaact 19327417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 141 - 253
Target Start/End: Complemental strand, 23493069 - 23492958
Alignment:
Q  141 tcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatt 240  Q
    |||||||||||||||||||||||| ||| |||| |||||||| |||||||||||||||   |||||||||| |||||||||||||||||||||||||  |    
T  23493069 tcccccagtttttatgtaatttttatctttttt-aataatatttatgagcaattgacacacaattagagtatggtaccaacttagttggacactattcct 23492971  T
Q  241 tttgatgtcattt 253  Q
    |||||||||||||    
T  23492970 tttgatgtcattt 23492958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 18885234 - 18885367
Alignment:
Q  135 ttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacact 234  Q
    |||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| || | |||||  | |||| ||||||||||| |    
T  18885234 ttatgtccccccagtttttatgtaatttttctctttttttaataatatatatgagcaattggcaacagatcaaagtagtattccaatttagttggacatt 18885333  T
Q  235 attatt-tttgatgtcattttgctcttgacttat 267  Q
    ||| || ||||||||||||||||| ||| |||||    
T  18885334 attcttctttgatgtcattttgcttttggcttat 18885367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 142 - 261
Target Start/End: Original strand, 21505703 - 21505820
Alignment:
Q  142 cccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattattt 241  Q
    |||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||||| |||| |||||| ||| ||||  |||||| | |||||| |||    
T  21505703 cccccaatttttatgtaattttt-tctttttttaataatatatatgagcaattgacaataaataagagtatggttccaatatagttgaaaactatt-ttt 21505800  T
Q  242 ttgatgtcattttgctcttg 261  Q
    ||| ||||||||||||||||    
T  21505801 ttgttgtcattttgctcttg 21505820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 37010353 - 37010235
Alignment:
Q  149 tttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgt 248  Q
    ||||||||||||||||| || || | ||||||||||||||||||||||||||| |||||||||| ||||| || ||||||  ||||  | ||||| ||||    
T  37010353 tttttatgtaatttttcccttttattaataatatatatgagcaattgacaacatattagagtagtgtacctacatagttgagcactgatcttttttatgt 37010254  T
Q  249 cattttgctcttgacttat 267  Q
    |||||| |||||| |||||    
T  37010253 cattttcctcttggcttat 37010235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 100 - 260
Target Start/End: Original strand, 1206796 - 1206957
Alignment:
Q  100 gttttgcctgttagggttgttgactggatcaattgttatgttcccccagttttta-tgtaatttttctctgttttcaataatatatatgagcaattgaca 198  Q
    |||||||| ||||||||||||||||||||||  | || ||| |||||| |||||  ||||||||||  || |||| |||||||| || |||||| |||||    
T  1206796 gttttgcccgttagggttgttgactggatcaggttttttgtccccccaattttttctgtaattttttcctttttttaataatatttacgagcaaatgaca 1206895  T
Q  199 acaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctctt 260  Q
    ||| |||| | || |||||| ||||| || |||| |||| |||||||||||||||| |||||    
T  1206896 acatattataataaggtaccgacttaattagacaatattctttttgatgtcattttactctt 1206957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 24600661 - 24600793
Alignment:
Q  135 ttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacact 234  Q
    |||||| |||||| |||||||||| |||||  || |||| |||||||| |||||||| || |||| | |||||||||||||||||||||||||||  ||     
T  24600661 ttatgtccccccaatttttatgtatttttttcctttttttaataatatttatgagcacttaacaaaagattagagtagggtaccaacttagttgggaacc 24600760  T
Q  235 attatttttgatgtcattttgctcttgacttat 267  Q
      | |||||| |||||||||||||||| |||||    
T  24600761 tgtctttttgctgtcattttgctcttgccttat 24600793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 267
Target Start/End: Complemental strand, 22310362 - 22310271
Alignment:
Q  176 ataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    ||||||| ||||||||||||||||||||| ||||||  || |||||||||||||||||||||  |||  ||||||||||||| ||| |||||    
T  22310362 ataatatttatgagcaattgacaacaaataagagtatagttccaacttagttggacactattcatttctatgtcattttgctattggcttat 22310271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 34446415 - 34446327
Alignment:
Q  179 atatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    |||||||||||||| |  ||||| |||||||||| || |||||||||||| |||| ||| ||||| ||||||||||||||||| |||||    
T  34446415 atatatatgagcaacttgcaacatattagagtagtgttccaacttagttgtacacgattctttttaatgtcattttgctcttggcttat 34446327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 19585554 - 19585460
Alignment:
Q  135 ttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttgg 229  Q
    |||||||| |||||| |||||||| ||| |  |  |||| |||||||| |||||||| ||||||| | |||||||||||||||||||||||||||    
T  19585554 ttatgttctcccagtatttatgtattttgttccattttttaataatatttatgagcatttgacaaaagattagagtagggtaccaacttagttgg 19585460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 261
Target Start/End: Complemental strand, 25125300 - 25125186
Alignment:
Q  149 tttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagt--agggtaccaacttagttggacactattatttttgat 246  Q
    ||||||||||||||||  || |||| |||||||| |||||||| || |||| | ||||||||  |||||||||||||||||||   | | | ||||| ||    
T  25125300 tttttatgtaattttttcctttttttaataatatttatgagcattttacaaaagattagagtagagggtaccaacttagttgggagcaactcttttttat 25125201  T
Q  247 gtcattttgctcttg 261  Q
    |||||||||||||||    
T  25125200 gtcattttgctcttg 25125186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 267
Target Start/End: Original strand, 18376341 - 18376457
Alignment:
Q  150 ttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtc 249  Q
    |||||||||||||||| || |||| |||||||||||| |  ||||||||| | |||| || |||| |||||| || ||| |||||||| ||||| || ||    
T  18376341 ttttatgtaatttttccctttttt-aataatatatataaataattgacaaaagattaaagcagggcaccaacctaattgaacactattcttttttatatc 18376439  T
Q  250 attttgctcttgacttat 267  Q
    ||||| |||||| |||||    
T  18376440 attttactcttgccttat 18376457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 19327192 - 19327226
Alignment:
Q  9 tttcgtgttgacgatcgattcattcaccaaacttt 43  Q
    |||||||||||||||||||||||||||||||||||    
T  19327192 tttcgtgttgacgatcgattcattcaccaaacttt 19327226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 29688829 - 29688789
Alignment:
Q  9 tttcgtgttgacgatcgattcattcaccaaacttttaaccc 49  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  29688829 tttcgtgttgacgatcgtttcattcaccaaactttaaaccc 29688789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 36316603 - 36316683
Alignment:
Q  144 cccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    ||||| |||||| ||||||||  || |||| |||||||||||||||||| || |||   |||| |||||||||||||||||    
T  36316603 cccagattttatataattttttcctttttttaataatatatatgagcaactggcaatcgattaaagtagggtaccaactta 36316683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 36330812 - 36330892
Alignment:
Q  144 cccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    ||||| |||||| ||||||||  || |||| |||||||||||||||||| || |||   |||| |||||||||||||||||    
T  36330812 cccagattttatataattttttcctttttttaataatatatatgagcaactggcaatcgattaaagtagggtaccaactta 36330892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 161
Target Start/End: Complemental strand, 22310468 - 22310363
Alignment:
Q  56 tagaattgtttaggtttgaatctattttatggatcattttttat-gttttgcctgttagggttgttgactggatcaattgttatgttcccccagttttta 154  Q
    ||||||| |||||| ||||||| | ||| |||||| |||||| | |||||||| |||| |||| |||||||| |||  | |||||| ||||| |||||||    
T  22310468 tagaattttttagggttgaatccactttgtggatcttttttttttgttttgcccgttaaggttattgactgggtcaggttttatgt-ccccctgttttta 22310370  T
Q  155 tgtaatt 161  Q
    |||||||    
T  22310369 tgtaatt 22310363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 37010499 - 37010465
Alignment:
Q  9 tttcgtgttgacgatcgattcattcaccaaacttt 43  Q
    ||||||||||||||||||||||||| |||||||||    
T  37010499 tttcgtgttgacgatcgattcattcgccaaacttt 37010465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 27020628 - 27020733
Alignment:
Q  119 ttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtacc 218  Q
    ||||||||||||  | || ||| | ||||| |||||| ||||||||  || |||| || ||||||||||||||| || |||   |||| |||||||||||    
T  27020628 ttgactggatcatattttttgtcctcccaggttttatataattttttcctttttttaacaatatatatgagcaactggcaatcgattaaagtagggtacc 27020727  T
Q  219 aactta 224  Q
    ||||||    
T  27020728 aactta 27020733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 144 - 261
Target Start/End: Complemental strand, 587059 - 586942
Alignment:
Q  144 cccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtaggg-taccaacttagttggacactattatttt 242  Q
    |||||||||||||||||||||| || |||| |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| ||||    
T  587059 cccagtttttatgtaatttttc-ctttttttaataatatatatgagcaattgacaacaatttaaagtaggggtaccaacttagttggacactattttttt 586961  T
Q  243 tgatgtcattttgctcttg 261  Q
    |||||||||||||||||||    
T  586960 tgatgtcattttgctcttg 586942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 101 - 261
Target Start/End: Original strand, 9152444 - 9152605
Alignment:
Q  101 ttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttc-tctgttttcaataatatatatgagcaattgacaa 199  Q
    ||||||| |||||||||||| ||||  |||  | |||||| ||  |||||||||||||||||||| ||  |||| |||||||||||||||||||||||||    
T  9152444 ttttgcccgttagggttgttaactgagtcaggttttatgtcccttcagtttttatgtaatttttcctccttttttaataatatatatgagcaattgacaa 9152543  T
Q  200 caaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttg 261  Q
    ||||| |||||| ||| |||||||||||| | | |||| |||||||||||||||||||||||    
T  9152544 caaataagagtatggttccaacttagttgaaaaatattctttttgatgtcattttgctcttg 9152605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 99 - 261
Target Start/End: Original strand, 53619182 - 53619342
Alignment:
Q  99 tgttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgaca 198  Q
    ||||||||| ||||||||||| |||| | |||   ||| ||| ||||||||||||||||| ||||||  | |||| ||||||||||||||||||||||||    
T  53619182 tgttttgcccgttagggttgtcgacttggtcag--gttttgtccccccagtttttatgtattttttccttttttttaataatatatatgagcaattgaca 53619279  T
Q  199 acaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttg 261  Q
     || ||||| ||||||| | |||||| |||| ||||||| |||||||||||||||||| ||||    
T  53619280 tcatattagcgtagggttctaacttatttgggcactattttttttgatgtcattttgcccttg 53619342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 91 - 267
Target Start/End: Complemental strand, 27081194 - 27081017
Alignment:
Q  91 attttttatgttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttc--aataatatatatga 188  Q
    |||||||||||||||||  || | |||||| ||||| |||  | |||||| ||||||||||||||||  ||||| | | ||||   ||||||||||||||    
T  27081194 attttttatgttttgcccatttgagttgttcactgggtcatgttttatgtccccccagtttttatgttttttttttttttttttttaataatatatatga 27081095  T
Q  189 gcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    ||||||||||| | ||||||||||||| |||||||||||||||||  || ||||| |||||| |||||||||| |||||    
T  27081094 gcaattgacaatagattagagtagggtgccaacttagttggacac-gttcttttttatgtcagtttgctcttggcttat 27081017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 46028613 - 46028704
Alignment:
Q  170 ttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttg 261  Q
    |||| ||||||||| ||||||||||||||||||||||||| | ||| |||||||| |||||||||||||||||| |||||||||||||||||    
T  46028613 tttttaataatataaatgagcaattgacaacaaattagagcaaggtcccaacttaattggacactattattttttatgtcattttgctcttg 46028704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 170 - 267
Target Start/End: Complemental strand, 637089 - 636992
Alignment:
Q  170 ttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    |||| ||||||||||||||| ||||||| | | |||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||    
T  637089 tttttaataatatatatgagtaattgactatagattagagtagggtaccaactaagttggacactattcttttctatgtcattttgctcttgacttat 636992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 93 - 226
Target Start/End: Original strand, 28311832 - 28311966
Alignment:
Q  93 tttttatgttttgcctgttagggttgttgactggatcaattgttatgttcccccagttttta--tgtaatttttctctgttttcaataatatatatgagc 190  Q
    |||| ||||||| ||  ||||| ||||||||||| |||   ||||||| |||||||||||||  |||||||||||||| |||| ||||||||||||||||    
T  28311832 ttttaatgtttttcccattaggattgttgactgggtcagg-gttatgtccccccagtttttacatgtaatttttctctttttttaataatatatatgagc 28311930  T
Q  191 aattgacaacaaattagagtagggtaccaacttagt 226  Q
    |||| |||||| ||||||||||||| ||||||||||    
T  28311931 aattaacaacagattagagtagggtgccaacttagt 28311966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 267
Target Start/End: Complemental strand, 22243368 - 22243276
Alignment:
Q  175 aataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    |||| |||||||||||||||||||| | |||| | ||||||||||||||||||| ||| |||| |||||||| ||||||| ||||||||||||    
T  22243368 aatattatatatgagcaattgacaaaagattataatagggtaccaacttagttgaacagtattctttttgatatcattttactcttgacttat 22243276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 141 - 267
Target Start/End: Original strand, 4546032 - 4546159
Alignment:
Q  141 tcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactatta-t 239  Q
    ||||| ||| ||||||| |||||| ||| |||| || |||||||||||| ||||||||| | |||| |||||||| |||| |||||||||||||| || |    
T  4546032 tcccctagtatttatgttatttttttctttttttaaaaatatatatgagtaattgacaaaagattatagtagggttccaatttagttggacactactatt 4546131  T
Q  240 ttttgatgtcattttgctcttgacttat 267  Q
    |||| || |||||||||||||| |||||    
T  4546132 tttttatatcattttgctcttgccttat 4546159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 144 - 267
Target Start/End: Original strand, 11618530 - 11618651
Alignment:
Q  144 cccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattattttt 243  Q
    |||||||||| |||||||||||| | |||  ||||||||||||||||||||| ||  | | |||| |||  | ||||||||||||||||||||| |||||    
T  11618530 cccagtttttttgtaatttttcttttttt--aataatatatatgagcaattggcattagaatagaatagacttccaacttagttggacactattcttttt 11618627  T
Q  244 gatgtcattttgctcttgacttat 267  Q
     |||| |||||||||||| |||||    
T  11618628 tatgttattttgctcttgccttat 11618651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 1545102 - 1545177
Alignment:
Q  159 atttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacact 234  Q
    ||||||| || |||| ||||||||||||||||||||||||| | ||||||| |||||||||||| |||||||||||    
T  1545102 atttttcccttttttgaataatatatatgagcaattgacaaaagattagagcagggtaccaactcagttggacact 1545177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 266
Target Start/End: Original strand, 25899516 - 25899606
Alignment:
Q  176 ataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgactta 266  Q
    ||||||||||||| |||||| ||| | | | ||||||| |||||||||| ||| | |||||| ||||||| ||| ||||||||||||||||    
T  25899516 ataatatatatgaacaattggcaaaagaattgagtaggataccaacttacttgaaaactattctttttgacgtcgttttgctcttgactta 25899606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 22402083 - 22402016
Alignment:
Q  157 taatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    ||||||||  || |||| |||||||||||||||||||||||||   |||| |||||||||||||||||    
T  22402083 taattttttcctttttttaataatatatatgagcaattgacaatcgattaaagtagggtaccaactta 22402016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 28414467 - 28414534
Alignment:
Q  157 taatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    |||||||| ||| |||| |||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  28414467 taatttttttctttttttaataatatatatgagcaactgacaatcgattaaagtagggtaccaactta 28414534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 33952038 - 33952105
Alignment:
Q  157 taatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    |||||||| ||| |||| |||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  33952038 taatttttttctttttttaataatatatatgagcaactgacaatcgattaaagtagggtaccaactta 33952105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 24095169 - 24095234
Alignment:
Q  192 attgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgct 257  Q
    |||||||| | ||||||||| |||| ||| ||||||||||||||| |||||  |||||||||||||    
T  24095169 attgacaatagattagagtatggtatcaatttagttggacactatcattttctatgtcattttgct 24095234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 3336352 - 3336432
Alignment:
Q  144 cccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    ||||| |||||| ||||||||  || |||| |||||||||||||||||| || |||   |||| |||||||||||||||||    
T  3336352 cccaggttttatataattttttcctttttttaataatatatatgagcaactggcaatcgattaaagtagggtaccaactta 3336432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 4062794 - 4062858
Alignment:
Q  160 tttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    ||||| ||| |||| |||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  4062794 tttttttctttttttaataatatatatgagcaactgacaatcgattaaagtagggtaccaactta 4062858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 37968851 - 37968787
Alignment:
Q  160 tttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    ||||| ||| |||| |||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  37968851 tttttttctttttttaataatatatatgagcaactgacaatcgattaaagtagggtaccaactta 37968787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 1576394 - 1576441
Alignment:
Q  207 gagtagggtaccaacttagttggacactattatttttgatgtcatttt 254  Q
    ||||||||| ||||||||||||||||||||| ||||| || |||||||    
T  1576394 gagtagggttccaacttagttggacactattcttttttatatcatttt 1576441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 23687377 - 23687319
Alignment:
Q  170 ttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttgg 229  Q
    |||| |||||||| |||||||| ||| ||| |||||||||||||||| ||||||||||||    
T  23687377 tttttaataatatttatgagcatttggcaa-aaattagagtagggtagcaacttagttgg 23687319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 24059614 - 24059556
Alignment:
Q  170 ttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttgg 229  Q
    |||| |||||||| |||||||| ||| ||| |||||||||||||||| ||||||||||||    
T  24059614 tttttaataatatttatgagcatttggcaa-aaattagagtagggtagcaacttagttgg 24059556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 28311733 - 28311769
Alignment:
Q  9 tttcgtgttgacgatcgattcattcaccaaactttta 45  Q
    |||| |||||| |||||||||||||||||||||||||    
T  28311733 tttcatgttgaggatcgattcattcaccaaactttta 28311769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 100 - 261
Target Start/End: Complemental strand, 15853154 - 15852993
Alignment:
Q  100 gttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaa 199  Q
    |||||||| |||||||||||||||||| |||  | |||||  |||| | ||||  ||||||| ||  || |||| |||||||||||||||||||||||||    
T  15853154 gttttgcccgttagggttgttgactgggtcaggttttatgccccccaacttttcctgtaattatttcctttttttaataatatatatgagcaattgacaa 15853055  T
Q  200 caaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttg 261  Q
    || ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||    
T  15853054 cagattagagtagggtcccaacttagttggacactattcttttttatgtcattttgctcttg 15852993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 100 - 261
Target Start/End: Original strand, 32830185 - 32830346
Alignment:
Q  100 gttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaa 199  Q
    |||||||| |||||||||||| ||||| |||  | |||||| |||  | ||||  ||||||||||  || |||| |||||||||||||||||||||||||    
T  32830185 gttttgcccgttagggttgtttactgggtcaggttttatgtccccaaatttttcctgtaattttttcctttttttaataatatatatgagcaattgacaa 32830284  T
Q  200 caaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttg 261  Q
    || |||||||||||||  |||||||||||||||||||| ||||| |||||||||| ||||||    
T  32830285 cagattagagtagggtttcaacttagttggacactattcttttttatgtcattttactcttg 32830346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 19050311 - 19050443
Alignment:
Q  135 ttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacact 234  Q
    |||||| |||||| ||||||||||||||||  || |||| ||||||||||||||||||||| ||  | ||||||||||||| |||||||| |||||||||    
T  19050311 ttatgtccccccaatttttatgtaattttttcctttttttaataatatatatgagcaattggcattagattagagtagggttccaacttaattggacact 19050410  T
Q  235 attatttttgatgtcattttgctcttgacttat 267  Q
    ||| ||||| ||||||||||||| ||| |||||    
T  19050411 attcttttttatgtcattttgctattgtcttat 19050443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 267
Target Start/End: Original strand, 18525818 - 18525983
Alignment:
Q  101 ttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaata--atatatatgagcaattgaca 198  Q
    ||||||| |||||||||||||||||| |||  | |||||| |||||||||||| |||||||||||  | || | ||||  |||||||||||||| |||||    
T  18525818 ttttgcccgttagggttgttgactgggtcaggttttatgtccccccagttttt-tgtaatttttcctttttcttaataatatatatatgagcaactgaca 18525916  T
Q  199 acaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
      | |||||||||| || ||||||||||||||||||||||||||| | ||||||||||||||| |||||    
T  18525917 --atattagagtagtgttccaacttagttggacactattattttttaagtcattttgctcttggcttat 18525983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 149 - 261
Target Start/End: Original strand, 5965417 - 5965529
Alignment:
Q  149 tttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgt 248  Q
    ||||| ||||||||||  || |||| ||||||||||||||||||||| ||| | | |||| |||||||||||||||||||||||||||| ||||| ||||    
T  5965417 tttttctgtaattttttcctttttttaataatatatatgagcaattggcaatagactagaatagggtaccaacttagttggacactattcttttttatgt 5965516  T
Q  249 cattttgctcttg 261  Q
    |||||||||||||    
T  5965517 cattttgctcttg 5965529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 1609439 - 1609527
Alignment:
Q  179 atatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||| |||||||||||| |||||||||||||| ||| |||| |||||    
T  1609439 atatatatgagcaactgacaacatattagagtagggttccaacttaattggacactattctttttgatgtcattatgcacttggcttat 1609527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 267
Target Start/End: Original strand, 41809180 - 41809300
Alignment:
Q  150 ttttatgtaatttttctc---tgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgat 246  Q
    ||||||||||||||| ||   | |||| |||||||||||||||| | || ||| | ||||||||||||||||||||| ||||| ||||| | ||||||||    
T  41809180 ttttatgtaatttttttcctttttttttaataatatatatgagcgaatgtcaaaagattagagtagggtaccaactttgttgggcactactttttttgat 41809279  T
Q  247 gtcattttgctcttgacttat 267  Q
    |||||||| ||||||||||||    
T  41809280 gtcattttactcttgacttat 41809300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 170 - 267
Target Start/End: Original strand, 11332374 - 11332471
Alignment:
Q  170 ttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    |||| ||||||||||||||||||||| ||||| | || | ||||||||||| |||||| ||||||||| ||||| ||||||||||||||||| |||||    
T  11332374 ttttaaataatatatatgagcaattggcaacagactaaaatagggtaccaatttagtttgacactattcttttttatgtcattttgctcttggcttat 11332471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 170 - 267
Target Start/End: Original strand, 11490395 - 11490492
Alignment:
Q  170 ttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    |||| ||||||||||||||||||||| ||||| | || | ||||||||||| |||||| ||||||||| ||||| ||||||||||||||||| |||||    
T  11490395 ttttaaataatatatatgagcaattggcaacagactaaaatagggtaccaatttagtttgacactattcttttttatgtcattttgctcttggcttat 11490492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 157 - 267
Target Start/End: Original strand, 32433474 - 32433585
Alignment:
Q  157 taatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtag--ggtaccaacttagttggacactattatttttgatgtcatttt 254  Q
    ||||||||| || |||| ||||||||||||||||||||||||||| | || |  |   ||| |||| |||||||||||||||||||||||||||||||||    
T  32433474 taatttttc-ctttttttaataatatatatgagcaattgacaacagactacaacaataggtgccaatttagttggacactattatttttgatgtcatttt 32433572  T
Q  255 gctcttgacttat 267  Q
    |||||||||||||    
T  32433573 gctcttgacttat 32433585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 254
Target Start/End: Complemental strand, 10399435 - 10399230
Alignment:
Q  59 aattgtttaggtttgaatctattttatggatcattttttatgttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttttatgta 158  Q
    ||||||||||| ||| ||| | ||| |||||| ||||||||||||||||||||||||||||| | ||| ||   | |||||| ||| | |||||||||||    
T  10399435 aattgtttagggttggatccactttgtggatctttttttatgttttgcctgttagggttgttaattgggtcgggttttatgt-cccacggtttttatgta 10399337  T
Q  159 atttttctctgttttc-----------aataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatg 247  Q
    ||||||| || ||||            ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||    ||||||| ||||| |||    
T  10399336 atttttcccttttttttttatttttataataatacatatgagcaattgacaacatattagagtaggctaccaacttagtcttgcactattcttttttatg 10399237  T
Q  248 tcatttt 254  Q
    |||||||    
T  10399236 tcatttt 10399230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 99 - 254
Target Start/End: Complemental strand, 1345340 - 1345187
Alignment:
Q  99 tgttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgaca 198  Q
    ||||||||| |||||| |||||| |||| |||  |  ||||| || ||| ||||||||||||| |||  | |||  ||||||||||||||||||||||||    
T  1345340 tgttttgcccgttaggattgttggctgggtcaggttgtatgtccctccaatttttatgtaattattcatttttt--aataatatatatgagcaattgaca 1345243  T
Q  199 acaaattagagtagggtaccaacttagttggacactattatttttgatgtcatttt 254  Q
    ||| || ||| |||||| |||||||| ||| |||||| | || |||||||||||||    
T  1345242 acagataagactagggttccaacttaattgaacactactcttattgatgtcatttt 1345187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 9090172 - 9090263
Alignment:
Q  170 ttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttg 261  Q
    |||| ||||||||||||||||||||| ||||| || |||||| ||| |||||||| ||| ||| | || ||||| |||||||||| ||||||    
T  9090172 tttttaataatatatatgagcaattggcaacagataagagtatggttccaacttaattgtacattgttcttttttatgtcattttactcttg 9090263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 267
Target Start/End: Original strand, 9885986 - 9886098
Alignment:
Q  155 tgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcatttt 254  Q
    |||||||||||  | |||| ||| |||| |||||||| ||||||| | |||||||| || ||||||||||||||||  | | |  |||||||||||||||    
T  9885986 tgtaatttttccttttttttaattatatttatgagcacttgacaaaatattagagttggataccaacttagttggaagccactccttttgatgtcatttt 9886085  T
Q  255 gctcttgacttat 267  Q
    ||| ||| |||||    
T  9886086 gcttttgccttat 9886098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 52838823 - 52838920
Alignment:
Q  135 ttatgttcccccagtttttatgtaatttttctc----tgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttg 228  Q
    |||||| ||||| ||||||||||||||||| ||    | |||| |||||||||||||||||||||||||   |||||||| |  ||||||||||||||    
T  52838823 ttatgtcccccctgtttttatgtaatttttttccttttttttttaataatatatatgagcaattgacaattgattagagttgaataccaacttagttg 52838920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 14589471 - 14589558
Alignment:
Q  170 ttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta----gttggacactattatttttgatgtcatttt 254  Q
    |||| ||||||||||||||||| ||| ||| || |||||||| ||||||||||||    ||||||||||||| ||| ||||||||||||    
T  14589471 tttttaataatatatatgagcatttgtcaa-aagttagagtatggtaccaacttaattagttggacactattctttctgatgtcatttt 14589558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 45541142 - 45541075
Alignment:
Q  157 taatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    ||||||||  || |||| |||||||||||||||||||||||||   |||| |||||||||||||||||    
T  45541142 taattttttcctttttttaataatatatatgagcaattgacaatcgattaaagtagggtaccaactta 45541075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 12437860 - 12437929
Alignment:
Q  161 ttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggac 231  Q
    ||||| || |||| ||||||||||| ||||||||||||| | ||||||||  |||||||||||||||||||    
T  12437860 ttttcccttttttaaataatatatacgagcaattgacaaaagattagagt-tggtaccaacttagttggac 12437929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 28641940 - 28642014
Alignment:
Q  150 ttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    |||||| ||||||||  || |||| ||||||||||||||||||||| |||   |||| |||||||||||||||||    
T  28641940 ttttatataattttttcctttttttaataatatatatgagcaattggcaatcgattaaagtagggtaccaactta 28642014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 40214299 - 40214357
Alignment:
Q  170 ttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttg 228  Q
    |||| ||||||||  ||||||| ||||||| | ||||||||||||||||||||||||||    
T  40214299 tttttaataatattcatgagcatttgacaaaagattagagtagggtaccaacttagttg 40214357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 8110383 - 8110303
Alignment:
Q  145 ccagtttttatgtaatttttctc-tgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    |||| |||||| |||||||| || | |||| |||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  8110383 ccaggttttatataatttttttcctttttttaataatatatatgagcaactgacaatcgattaaagtagggtaccaactta 8110303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 2027490 - 2027424
Alignment:
Q  157 taatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    |||||||| ||| |||| |||||||||||||||||||||||||   |||| |||| ||||||||||||    
T  2027490 taatttttttctttttt-aataatatatatgagcaattgacaatcgattaaagtaaggtaccaactta 2027424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 18414250 - 18414177
Alignment:
Q  119 ttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaa 192  Q
    ||||||||||||  | || ||| | ||||| |||||| |||||||| ||| |||| ||||||||||||||||||    
T  18414250 ttgactggatcatattttttgtcctcccagattttatataatttttttctttttttaataatatatatgagcaa 18414177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 41401509 - 41401590
Alignment:
Q  144 cccagtttttatgtaatttttctc-tgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    ||||| |||||| |||||||| || | |||| |||||||||||||||||| || |||   |||| |||||||||||||||||    
T  41401509 cccagattttatataatttttttcctttttttaataatatatatgagcaactggcaatcgattaaagtagggtaccaactta 41401590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 6946653 - 6946589
Alignment:
Q  135 ttatgttcccccagtttttatgtaatttttctc-tgttttcaataatatatatgagcaattgaca 198  Q
    |||||| |||||| |||||||||| ||||| || | |||| ||||||||||||||||| ||||||    
T  6946653 ttatgtccccccaatttttatgtattttttttcctttttttaataatatatatgagcatttgaca 6946589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 92 - 261
Target Start/End: Original strand, 3735912 - 3736083
Alignment:
Q  92 ttttttatgttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttc---aataatatatatga 188  Q
    ||||| |||||||| |  ||||||||||||||||| |||| | ||| || |||||||||||||||||||||||  || ||||    |||||||||||||     
T  3735912 tttttaatgttttgtccattagggttgttgactgggtcaagttttacgt-cccccagtttttatgtaattttttccttttttttttaataatatatatgg 3736010  T
Q  189 gcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttg 261  Q
    ||||||| ||| | |||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  3736011 gcaattggcaaaagattaaagtagggtaccaacttaattggacactattctttttgatgtcattttgctcttg 3736083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 267
Target Start/End: Complemental strand, 3941504 - 3941347
Alignment:
Q  110 ttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagag 209  Q
    |||||||||||||||   |||  | |||||| |||| | |||||||||||||||||  | |||| |||||||| | || ||||||| ||| | |  ||||    
T  3941504 ttagggttgttgactatgtcaggttttatgtccccctaatttttatgtaatttttccttttttttaataatatgtttgtgcaattggcaagagaggagag 3941405  T
Q  210 tagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  3941404 tagggttccaacatagttggacactattctttttgatgtcattttgctcttgacttat 3941347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 141 - 259
Target Start/End: Original strand, 26899362 - 26899478
Alignment:
Q  141 tcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatt 240  Q
    ||||||| ||||||||||||||||| |  |||| ||||||||  ||||||||||||||||| |||||| ||||  ||||||||| |||||||||||||||    
T  26899362 tcccccaatttttatgtaatttttcccgttttttaataatat--atgagcaattgacaacatattagattaggacaccaacttaattggacactattatt 26899459  T
Q  241 tttgatgtcattttgctct 259  Q
    ||| |||||||| ||||||    
T  26899460 ttttatgtcattatgctct 26899478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 11958821 - 11959048
Alignment:
Q  13 gtgttgacgatcgattcattcaccaaacttttaacccg------attaatagaattgtttaggtttgaatctattttatggatcattttt---tatgttt 103  Q
    ||||||| |||| ||||||||||||||||||  |||||      |||  |||| ||||||||| ||| ||| | ||| |||||| |||||   | |||||    
T  11958821 gtgttgatgatctattcattcaccaaactttagacccgcgcttaattgttagatttgtttagggttggatccactttgtggatcttttttatttttgttt 11958920  T
Q  104 tgcctgttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaa 203  Q
    || | |||||||||||||||||| |||  | || ||| ||| |||||||||||||||||||   | |||| |||| |||||||||||||||||||||| |    
T  11958921 tgtccgttagggttgttgactgggtcaggttttttgt-ccctcagtttttatgtaattttttcttttttttaatattatatatgagcaattgacaacaga 11959019  T
Q  204 ttagagtagggtaccaacttagttggaca 232  Q
    | |||||||||| |||| |||||||||||    
T  11959020 tcagagtagggtcccaatttagttggaca 11959048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 26936734 - 26936788
Alignment:
Q  183 atatgagcaattgacaacaaattagagtagggtaccaacttagttggacactatt 237  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26936734 atatgagcaattgacaacaaattagagtagggtatcaacttagttggacactatt 26936788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 5323266 - 5323357
Alignment:
Q  175 aataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    |||| ||||||||||||||||| || |||||| || ||| ||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||    
T  5323266 aatattatatatgagcaattgataaaaaattaaagcaggataccaacttagttggccactattcttttt-atgtcattttgctctttacttat 5323357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 170 - 267
Target Start/End: Complemental strand, 17648239 - 17648144
Alignment:
Q  170 ttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    |||| |||||| ||||||||||||||  |||| |||||||||||||||||||||||||| ||||  || ||||| ||||||||| ||||||| |||||    
T  17648239 tttttaataatgtatatgagcaattggtaacagattagagtagggtaccaacttagttgaacac--ttctttttaatgtcatttcgctcttggcttat 17648144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 8776847 - 8776727
Alignment:
Q  149 tttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattaga---gtagggtaccaacttagttggacactattatttttga 245  Q
    ||||||| || |||||| || |||| ||||||||||||||||||||||||||| || | |   |||||||   || |||||||||||||||| ||||| |    
T  8776847 tttttatatattttttc-cttttttaaataatatatatgagcaattgacaacatataaaaaaagtagggttttaatttagttggacactattctttttta 8776749  T
Q  246 tgtcattttgctcttgacttat 267  Q
    ||||||||||||||||| ||||    
T  8776748 tgtcattttgctcttgatttat 8776727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 27287231 - 27287319
Alignment:
Q  141 tcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttgga 230  Q
    ||||| |||||||||||| |||||  || |||| ||||| || ||||||||  |||||| | ||||||||||||||||||||||||||||    
T  27287231 tcccctagtttttatgtatttttttcctttttttaataaaatttatgagcatctgacaa-agattagagtagggtaccaacttagttgga 27287319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 30238909 - 30238995
Alignment:
Q  142 cccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagag--tagggtaccaacttagtt 227  Q
    |||||| |||||||||||||||||||| |||| |||||||| || ||||| | ||||| | |||||||  ||||||||||||||||||    
T  30238909 cccccaatttttatgtaatttttctct-tttttaataatatttacgagcattcgacaaaagattagagtatagggtaccaacttagtt 30238995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 39618267 - 39618341
Alignment:
Q  150 ttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    |||||| ||||||||  || |||| ||||||||||||||||||||| |||   |||| |||||||||||||||||    
T  39618267 ttttatataattttttcctttttttaataatatatatgagcaattggcaatcgattaaagtagggtaccaactta 39618341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 29959716 - 29959627
Alignment:
Q  141 tcccccagtttttatgtaattttt-ctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttgg 229  Q
    ||||||| |||||||||| ||||| | || |||  || ||||| |||||||| ||||||| | ||||||||| |||||||||||| ||||    
T  29959716 tcccccaatttttatgtatttttttccctttttaaaaaaatatttatgagcatttgacaaaagattagagtatggtaccaacttaattgg 29959627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 109 - 267
Target Start/End: Complemental strand, 15900 - 15738
Alignment:
Q  109 gttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttc----tctgttttcaataatatatatgagcaattgacaacaaat 204  Q
    |||||||||||||||||| |||  | |||||||||||||||||||||||||||| ||    | | |||| ||||||||| | ||||||||| ||||| ||    
T  15900 gttagggttgttgactgggtcaggttttatgttcccccagtttttatgtaatttctcctcttttttttttaataatatacacgagcaattggcaacatat 15801  T
Q  205 tagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    |||||||||||  |||||||||||||||||||| |||| ||| |||||||||||||| |||||    
T  15800 tagagtagggtctcaacttagttggacactattcttttggatatcattttgctcttggcttat 15738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 101 - 261
Target Start/End: Complemental strand, 6764063 - 6763908
Alignment:
Q  101 ttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaac 200  Q
    ||||||| |||||||||||||||||| |||  | |||||| ||||||||||| |||||||||||| || |||| |||||||||||||||||| ||||||     
T  6764063 ttttgcccgttagggttgttgactgggtcagattttatgt-cccccagtttt-atgtaatttttc-ctttttttaataatatatatgagcaactgacaat 6763967  T
Q  201 aaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttg 261  Q
    |  ||||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||    
T  6763966 a--ttagagtagtgttccaacttagttggacactattcttttttatgtcattttgctcttg 6763908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 85 - 267
Target Start/End: Original strand, 16044702 - 16044885
Alignment:
Q  85 tggatcattttttatgttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatat-- 182  Q
    |||||| ||||||||| |||||| |||||||||| | ||||| |||  | |||||| |  ||||||||||||||||||||  |  |||| ||||||||      
T  16044702 tggatctttttttatggtttgcccgttagggttgcttactgggtcaggttttatgt-cgtccagtttttatgtaatttttgcccttttttaataatattt 16044800  T
Q  183 atatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    |||||||||||||||||||||||||||| || |||||||||||||| ||| |||| ||||||||||| |||| ||||||||||||    
T  16044801 atatgagcaattgacaacaaattagagttggataccaacttagttgtacattattctttttgatgtcttttttctcttgacttat 16044885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 261
Target Start/End: Original strand, 17110479 - 17110640
Alignment:
Q  100 gttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttttat-gtaatttttctctgttttcaataatatatatgagcaattgaca 198  Q
    |||||| | |||||||||||||||||| |||  | |||||| |||||| ||||| | |||||||||  || || | ||||||||||||||||||||||||    
T  17110479 gttttgtccgttagggttgttgactgggtcaggttttatgtccccccaatttttcttgtaattttttccttttct-aataatatatatgagcaattgaca 17110577  T
Q  199 acaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttg 261  Q
    ||| | || | ||||||  ||| |||||||||||||||| |||||||||||||||||||||||    
T  17110578 acagactataatagggtttcaatttagttggacactattctttttgatgtcattttgctcttg 17110640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 261
Target Start/End: Original strand, 29731235 - 29731382
Alignment:
Q  109 gttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattaga 208  Q
    |||||||||||||||||  |||  | |||||| || |||||| |||||||||||  || | |||| |||||||| |||||||||||| | ||||    ||    
T  29731235 gttagggttgttgactgagtcaggttttatgtccctccagttcttatgtaatttccctttttttt-aataatatttatgagcaattggccacaa----ga 29731329  T
Q  209 gtagggtaccaacttagttggacactattatttttgatgtcattttgctcttg 261  Q
    ||| ||| ||||||||||||||||||||   |||| |||||||||| ||||||    
T  29731330 gtatggttccaacttagttggacactatccatttttatgtcattttactcttg 29731382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 869866 - 869791
Alignment:
Q  193 ttgacaacaaattagagtagggtaccaacttagttggacactattattttt-gatgtcattttgctcttgacttat 267  Q
    ||||||| | |||||||||||||||||||||||||||   ||||| ||||| |||||||||||||| |||| ||||    
T  869866 ttgacaaaagattagagtagggtaccaacttagttgggtgctattctttttggatgtcattttgcttttgatttat 869791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 39561314 - 39561381
Alignment:
Q  157 taatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    |||||||| ||| |||| |||||||||||| ||||||||||||   |||| |||||||||||||||||    
T  39561314 taatttttttctttttttaataatatatataagcaattgacaatcgattaaagtagggtaccaactta 39561381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 17197491 - 17197375
Alignment:
Q  149 tttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgt 248  Q
    ||||||| || |||||| || |||| |||||||| |||||| | ||||||  | |||||||||||||||| ||||||||||| || | | ||||| ||||    
T  17197491 tttttatatactttttc-ctttttttaataatatttatgagaatttgacataagattagagtagggtaccgacttagttgga-accactcttttttatgt 17197394  T
Q  249 cattttgctcttgacttat 267  Q
    || |||||||||| |||||    
T  17197393 caatttgctcttgccttat 17197375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 260
Target Start/End: Complemental strand, 6363385 - 6363274
Alignment:
Q  149 tttttatgtaattttt-ctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatg 247  Q
    |||||||||||||||| | || |||| |||||||  |||||||| |  |||| |||||||||| ||||||||||||||||||   | | | ||||| |||    
T  6363385 tttttatgtaattttttccctttttttaataataattatgagcattgaacaa-aaattagagtcgggtaccaacttagttgggagccactcttttttatg 6363287  T
Q  248 tcattttgctctt 260  Q
    |||||||||||||    
T  6363286 tcattttgctctt 6363274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 5808728 - 5808782
Alignment:
Q  170 ttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    |||| ||||||||||||||||||||| |||   |||| |||||||||||||||||    
T  5808728 tttttaataatatatatgagcaattggcaatcgattaaagtagggtaccaactta 5808782  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 16484621 - 16484557
Alignment:
Q  160 tttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    ||||| ||| |||| |||||||||||||||||| ||||||   |||| || ||||||||||||||    
T  16484621 tttttttctttttttaataatatatatgagcaactgacaatcgattaaagcagggtaccaactta 16484557  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 22494865 - 22494929
Alignment:
Q  160 tttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaactta 224  Q
    ||||| ||| |||| |||||||||||||||||| || |||   |||| |||||||||||||||||    
T  22494865 tttttttctttttttaataatatatatgagcaactggcaatcgattaaagtagggtaccaactta 22494929  T

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Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 142 - 267
Target Start/End: Original strand, 9894171 - 9894295
Alignment:
Q  142 cccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattattt 241  Q
    ||||||||||||||| |||||||| || |||| ||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||| | | |    
T  9894171 cccccagtttttatgcaatttttc-ctttttttaataatatatatgagcaattggcaacatattagggtaggataccaacttagttggacactactctat 9894269  T
Q  242 ttgatgtcattttgctcttgacttat 267  Q
    |||||||||||||||||||| |||||    
T  9894270 ttgatgtcattttgctcttgccttat 9894295  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 12528522 - 12528653
Alignment:
Q  135 ttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacact 234  Q
    |||||| ||||||||||||||||||||||| ||| |||| ||| |||||||||| ||||||| || | |||||||||| ||||||||||||||| | |||    
T  12528522 ttatgtccccccagtttttatgtaattttt-tctttttttaattatatatatgaacaattgataaaagattagagtagagtaccaacttagttgaatact 12528620  T
Q  235 attatttttgatgtcattttgctcttgacttat 267  Q
    ||| ||||| |||||||||||||||||||||||    
T  12528621 attctttttaatgtcattttgctcttgacttat 12528653  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 59 - 267
Target Start/End: Complemental strand, 31078881 - 31078675
Alignment:
Q  59 aattgtttaggtttgaatctattttatggatcattttttatgttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttttatgta 158  Q
    ||||||||||| ||||||| | ||| |||||| ||||||| |||| ||| |||||||||||||||||  ||   | |||| | ||| || ||||||||||    
T  31078881 aattgtttagggttgaatccactttgtggatc-ttttttaggttt-gcccgttagggttgttgactgagtcgggttttatatccccacaatttttatgta 31078784  T
Q  159 atttttc--tctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgc 256  Q
    |||||||  | | |||| ||||||||||||||||||||| ||||||||  ||| ||||| ||||||||||||||||||||| |||||  |||||||||||    
T  31078783 atttttccttttttttttaataatatatatgagcaattggcaacaaatatgagcagggttccaacttagttggacactattcttttt--tgtcattttgc 31078686  T
Q  257 tcttgacttat 267  Q
    ||||| |||||    
T  31078685 tcttggcttat 31078675  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 91 - 267
Target Start/End: Original strand, 9160589 - 9160766
Alignment:
Q  91 attttttatgttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataata--tatatga 188  Q
    ||||||||| |||||||  |||||||||||||  || |||  | ||||||  || ||| ||||||||||||||||  | |||  |||||||  |||||||    
T  9160589 attttttattttttgcccattagggttgttgatcgggtcaggttttatgtctcctcag-ttttatgtaatttttccttttttataataatatttatatga 9160687  T
Q  189 gcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    |||| | |||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||||| |||||| |||||    
T  9160688 gcaacttacaacatattagagtagggttccaacttagttggacaccattctttttgatgtcattttactcttggcttat 9160766  T

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Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 135 - 261
Target Start/End: Complemental strand, 27544822 - 27544695
Alignment:
Q  135 ttatgttcccccagttttta-tgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacac 233  Q
    |||||| || |||||||||  ||||||||||  || |||| |||||||||||  ||||| |||||||| | |||| ||||||||||||||||||||||||    
T  27544822 ttatgtccctccagtttttcctgtaattttttcctttttttaataatatatacaagcaaatgacaacagactagaatagggtaccaacttagttggacac 27544723  T
Q  234 tattatttttgatgtcattttgctcttg 261  Q
    |||| |||||||| ||||||||||||||    
T  27544722 tattctttttgatatcattttgctcttg 27544695  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 30750418 - 30750330
Alignment:
Q  179 atatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    |||||||||||||| ||| | || |||||||||| || ||||||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  30750418 atatatatgagcaactgatatcatattagagtagtgttccaacttagttggacactattcttttttatgtcattttgctcttggcttat 30750330  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 256
Target Start/End: Original strand, 19378341 - 19378456
Alignment:
Q  141 tcccccagtttttatgtaatttttctctgttttc-aataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactattat 239  Q
    |||||||||||||||||| |||||  || ||||  ||||| || |||||||| ||||||| | |||||||||||||||||||||||||| ||||   | |    
T  19378341 tcccccagtttttatgtatttttttccttttttttaataaaatttatgagcatttgacaa-agattagagtagggtaccaacttagttgaacacctctct 19378439  T
Q  240 ttttgatgtcattttgc 256  Q
     ||||||||||||||||    
T  19378440 ctttgatgtcattttgc 19378456  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 4032190 - 4032130
Alignment:
Q  206 agagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttgacttat 267  Q
    ||||||| || ||||||||||||||||||||| ||||||||||||||||| ||||| |||||    
T  4032190 agagtagtgttccaacttagttggacactatt-tttttgatgtcattttggtcttgtcttat 4032130  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 4160094 - 4160181
Alignment:
Q  150 ttttatgtaatttttctc-tgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacactat 236  Q
    |||||||||||||||  | | |||| ||||||||||||||||||||||||| | |||| |||| |  |||||||||||||| ||||||    
T  4160094 ttttatgtaattttttgcgtttttttaataatatatatgagcaattgacaaaatattatagtatgtcaccaacttagttgggcactat 4160181  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 18747419 - 18747508
Alignment:
Q  135 ttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttag 225  Q
    |||||| |||| |||||||||||| ||||| |  ||||| ||||| || |||||||| ||||||| | ||||||||||||| |||||||||    
T  18747419 ttatgtccccctagtttttatgtatttttttttcgtttttaataaaatttatgagcatttgacaa-agattagagtagggttccaacttag 18747508  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 31615296 - 31615243
Alignment:
Q  207 gagtagggtaccaacttagttggacactattatttttgatgtcattttgctctt 260  Q
    |||||||||||||||||||||||| || | | |||| |||||||||||||||||    
T  31615296 gagtagggtaccaacttagttggaaaccactcttttcgatgtcattttgctctt 31615243  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 19813693 - 19813757
Alignment:
Q  135 ttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaa 199  Q
    |||||| ||| ||||||||||||| ||||||  | |||| ||||||||||||||||| |||||||    
T  19813693 ttatgtccccgcagtttttatgtattttttccttttttttaataatatatatgagcacttgacaa 19813757  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 30750582 - 30750502
Alignment:
Q  101 ttttgcctgttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatata 183  Q
    ||||||| |||||||||||||||||| |||  | |||||| |||| |  ||||||||||||||| ||| |||| |||||||||    
T  30750582 ttttgcccgttagggttgttgactgggtcagattttatgtcccccaa--ttttatgtaatttttttctttttttaataatata 30750502  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 6409088 - 6409023
Alignment:
Q  197 caacaaattagagtagggtaccaacttagttggacactattatttttgatgtcattttgctcttga 262  Q
    |||||||| ||| |||||| |||| ||| ||||| ||||||  |||| ||||||||||||||||||    
T  6409088 caacaaataagattagggttccaatttaattggatactattcattttaatgtcattttgctcttga 6409023  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 30750702 - 30750669
Alignment:
Q  9 tttcgtgttgacgatcgattcattcaccaaactt 42  Q
    ||||||||||||||||||||||||| ||||||||    
T  30750702 tttcgtgttgacgatcgattcattcgccaaactt 30750669  T

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Target: scaffold0204 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 13969 - 14100
Alignment:
Q  135 ttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtaccaacttagttggacact 234  Q
    |||||| ||||||||||||||||| |||||| || |||| ||||||||||||||||||||| ||| | |||||||| ||| ||||| |||||||| ||||    
T  13969 ttatgtccccccagtttttatgtattttttc-ctttttttaataatatatatgagcaattggcaaaagattagagtggggcaccaatttagttgggcact 14067  T
Q  235 attatttttgatgtcattttgctcttgacttat 267  Q
    ||| | | | ||||||||||||| ||| |||||    
T  14068 attctatcttatgtcattttgcttttgccttat 14100  T

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Target: scaffold0115 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 110 - 254
Target Start/End: Complemental strand, 17145 - 17001
Alignment:
Q  110 ttagggttgttgactggatcaattgttatgttcccccagtttttatgtaatttttc-tctgttttcaataatatatatgagcaattgacaacaaattaga 208  Q
    ||||||||||||||||| | |  | ||||||| ||| ||||||||||||||||||| ||| |||| || |||||||| ||||||||| ||||| || |||    
T  17145 ttagggttgttgactgggttaggttttatgtttccctagtttttatgtaatttttcctct-ttttaaacaatatataagagcaattggcaacatataaga 17047  T
Q  209 gtagggtaccaacttagttggacactattatttttgatgtcatttt 254  Q
    |||||||||||||||  ||||||| |||| ||||| || |||||||    
T  17046 gtagggtaccaacttcattggacattattctttttaatttcatttt 17001  T

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Target: scaffold0256 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 4410 - 4515
Alignment:
Q  119 ttgactggatcaattgttatgttcccccagtttttatgtaatttttctctgttttcaataatatatatgagcaattgacaacaaattagagtagggtacc 218  Q
    ||||||||||||  | || ||| | ||||| |||||| ||||||||  || |||| |||||||||||||||||| ||| ||   |||| |||||||||||    
T  4410 ttgactggatcatattttttgtcctcccaggttttatataattttttcctttttttaataatatatatgagcaaatgaaaatcgattaaagtagggtacc 4509  T
Q  219 aactta 224  Q
    ||||||    
T  4510 aactta 4515  T

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