View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9484_low_38 (Length: 344)

Name: NF9484_low_38
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9484_low_38
NF9484_low_38
[»] chr3 (33 HSPs)
chr3 (17-341)||(34280604-34280927)
chr3 (17-166)||(3537323-3537471)
chr3 (17-161)||(50534928-50535071)
chr3 (17-167)||(48908707-48908856)
chr3 (17-164)||(37673971-37674117)
chr3 (17-166)||(38639696-38639844)
chr3 (25-166)||(44400824-44400964)
chr3 (17-165)||(5939598-5939745)
chr3 (82-145)||(47359495-47359558)
chr3 (17-137)||(49183802-49183922)
chr3 (17-137)||(517477-517596)
chr3 (17-164)||(25753931-25754076)
chr3 (25-166)||(33944456-33944596)
chr3 (17-164)||(51686623-51686769)
chr3 (82-166)||(16883891-16883974)
chr3 (82-166)||(53888667-53888751)
chr3 (82-168)||(34729153-34729238)
chr3 (17-167)||(53664423-53664573)
chr3 (82-164)||(54126441-54126523)
chr3 (87-168)||(35989269-35989350)
chr3 (82-167)||(40118716-40118800)
chr3 (17-164)||(45570762-45570908)
chr3 (82-167)||(52620650-52620735)
chr3 (102-170)||(41099549-41099617)
chr3 (17-166)||(50948323-50948471)
chr3 (105-164)||(30121340-30121399)
chr3 (84-166)||(21777456-21777536)
chr3 (102-160)||(36598443-36598501)
chr3 (125-166)||(35283311-35283352)
chr3 (105-166)||(47789262-47789323)
chr3 (93-165)||(33281540-33281612)
chr3 (120-164)||(42668261-42668305)
chr3 (139-171)||(46672415-46672447)
[»] chr7 (27 HSPs)
chr7 (17-164)||(38505162-38505308)
chr7 (34-166)||(33871776-33871907)
chr7 (17-166)||(42254085-42254233)
chr7 (17-165)||(4057963-4058110)
chr7 (17-166)||(16805383-16805531)
chr7 (17-128)||(13044264-13044375)
chr7 (28-164)||(35264709-35264844)
chr7 (82-148)||(2826082-2826148)
chr7 (38-164)||(23465818-23465943)
chr7 (36-169)||(42112771-42112904)
chr7 (17-166)||(32650207-32650355)
chr7 (82-164)||(6746400-6746481)
chr7 (105-169)||(34651866-34651930)
chr7 (82-164)||(30081153-30081236)
chr7 (107-167)||(34670526-34670586)
chr7 (82-166)||(41471624-41471708)
chr7 (17-73)||(45940318-45940374)
chr7 (17-60)||(10591825-10591868)
chr7 (17-62)||(15748868-15748913)
chr7 (100-137)||(38470844-38470881)
chr7 (122-167)||(38505501-38505546)
chr7 (105-162)||(47275821-47275878)
chr7 (17-61)||(19791784-19791828)
chr7 (126-166)||(30081236-30081276)
chr7 (120-164)||(33872219-33872263)
chr7 (20-60)||(34670305-34670345)
chr7 (128-168)||(36747164-36747204)
[»] chr8 (17 HSPs)
chr8 (17-163)||(79439-79587)
chr8 (17-164)||(29584291-29584437)
chr8 (27-164)||(34336157-34336293)
chr8 (17-166)||(12506012-12506160)
chr8 (17-161)||(36837319-36837462)
chr8 (17-163)||(23932367-23932512)
chr8 (17-166)||(6943281-6943430)
chr8 (82-160)||(41865458-41865535)
chr8 (82-127)||(13369772-13369817)
chr8 (17-133)||(21173707-21173822)
chr8 (82-137)||(43239907-43239962)
chr8 (122-171)||(23932724-23932773)
chr8 (82-166)||(1839636-1839720)
chr8 (131-167)||(11226217-11226253)
chr8 (82-164)||(13227891-13227978)
chr8 (118-166)||(10604947-10604995)
chr8 (17-61)||(13369840-13369884)
[»] chr4 (31 HSPs)
chr4 (17-164)||(38136652-38136798)
chr4 (17-164)||(29114061-29114207)
chr4 (17-166)||(33500637-33500786)
chr4 (87-166)||(22165582-22165661)
chr4 (17-164)||(30198589-30198735)
chr4 (17-169)||(49667929-49668078)
chr4 (17-166)||(12708650-12708798)
chr4 (83-162)||(16461547-16461627)
chr4 (83-164)||(35959349-35959430)
chr4 (82-167)||(41708933-41709018)
chr4 (17-166)||(16318734-16318883)
chr4 (95-166)||(51151883-51151954)
chr4 (17-160)||(50494476-50494618)
chr4 (25-123)||(16423038-16423135)
chr4 (17-73)||(28175372-28175428)
chr4 (115-166)||(48620494-48620545)
chr4 (82-161)||(50784179-50784258)
chr4 (82-164)||(42650813-42650895)
chr4 (119-164)||(55510122-55510167)
chr4 (17-61)||(368174-368218)
chr4 (114-173)||(41844648-41844707)
chr4 (122-164)||(22845377-22845419)
chr4 (105-167)||(31530227-31530289)
chr4 (84-149)||(46176772-46176836)
chr4 (125-162)||(368290-368327)
chr4 (105-166)||(3126828-3126889)
chr4 (109-166)||(20534135-20534192)
chr4 (128-161)||(30863044-30863077)
chr4 (38-70)||(7182102-7182134)
chr4 (116-168)||(31418774-31418826)
chr4 (125-161)||(44076473-44076509)
[»] chr5 (21 HSPs)
chr5 (25-164)||(14569866-14570006)
chr5 (17-162)||(10843151-10843295)
chr5 (17-164)||(39649688-39649834)
chr5 (82-164)||(38568197-38568279)
chr5 (17-167)||(5772545-5772694)
chr5 (17-160)||(13569479-13569621)
chr5 (17-165)||(35683290-35683437)
chr5 (92-164)||(18671139-18671209)
chr5 (82-164)||(10955507-10955589)
chr5 (84-166)||(9684607-9684689)
chr5 (83-164)||(32824831-32824913)
chr5 (105-166)||(10295690-10295751)
chr5 (122-167)||(18670902-18670947)
chr5 (17-61)||(8944162-8944206)
chr5 (95-166)||(8944251-8944327)
chr5 (17-73)||(18675631-18675687)
chr5 (88-151)||(39027927-39027990)
chr5 (82-161)||(43496717-43496796)
chr5 (120-166)||(35708611-35708657)
chr5 (87-128)||(10438162-10438203)
chr5 (38-70)||(26149741-26149773)
[»] chr2 (32 HSPs)
chr2 (17-166)||(43572360-43572508)
chr2 (25-166)||(31082926-31083063)
chr2 (17-169)||(41099928-41100079)
chr2 (17-170)||(1364940-1365092)
chr2 (17-166)||(13018294-13018442)
chr2 (17-166)||(37194384-37194532)
chr2 (17-166)||(39205134-39205282)
chr2 (17-162)||(40212120-40212264)
chr2 (37-164)||(7367714-7367841)
chr2 (17-171)||(21626242-21626395)
chr2 (87-160)||(15234694-15234767)
chr2 (17-164)||(11515161-11515307)
chr2 (34-159)||(35549982-35550105)
chr2 (17-133)||(16813740-16813854)
chr2 (17-133)||(16853019-16853133)
chr2 (82-164)||(15803353-15803435)
chr2 (17-153)||(1270531-1270667)
chr2 (17-164)||(26905921-26906073)
chr2 (82-131)||(34757787-34757836)
chr2 (43-151)||(21835050-21835158)
chr2 (82-162)||(30072265-30072345)
chr2 (105-164)||(41655225-41655284)
chr2 (82-136)||(28539273-28539327)
chr2 (105-166)||(36567094-36567155)
chr2 (82-170)||(16518902-16518989)
chr2 (83-164)||(43190378-43190459)
chr2 (120-166)||(44137296-44137342)
chr2 (123-164)||(16625632-16625673)
chr2 (82-162)||(36870418-36870499)
chr2 (122-166)||(11514914-11514958)
chr2 (82-166)||(31584583-31584667)
chr2 (141-169)||(40211871-40211899)
[»] chr1 (36 HSPs)
chr1 (17-166)||(37649432-37649580)
chr1 (17-164)||(36886986-36887132)
chr1 (17-169)||(52067960-52068111)
chr1 (82-165)||(14439751-14439834)
chr1 (17-164)||(2909234-2909380)
chr1 (82-164)||(24369081-24369163)
chr1 (17-164)||(34154156-34154302)
chr1 (37-162)||(69868-69992)
chr1 (17-166)||(666393-666542)
chr1 (17-166)||(17760301-17760449)
chr1 (82-161)||(38795233-38795312)
chr1 (17-160)||(50226147-50226290)
chr1 (82-164)||(4204597-4204679)
chr1 (17-160)||(46001683-46001825)
chr1 (82-162)||(37875572-37875652)
chr1 (17-133)||(5584622-5584737)
chr1 (17-133)||(41817148-41817263)
chr1 (89-134)||(33324812-33324857)
chr1 (83-164)||(43036141-43036222)
chr1 (84-164)||(50587216-50587295)
chr1 (82-164)||(49102793-49102875)
chr1 (17-73)||(27255316-27255372)
chr1 (131-167)||(47742775-47742811)
chr1 (128-164)||(51302993-51303029)
chr1 (82-168)||(7915741-7915827)
chr1 (82-128)||(29092264-29092310)
chr1 (105-166)||(33991746-33991807)
chr1 (122-167)||(36886739-36886784)
chr1 (121-166)||(40136435-40136480)
chr1 (105-166)||(43571785-43571846)
chr1 (82-163)||(52073249-52073330)
chr1 (17-61)||(4204700-4204744)
chr1 (17-61)||(28848719-28848763)
chr1 (17-57)||(32287697-32287737)
chr1 (128-164)||(39508995-39509031)
chr1 (89-149)||(39886767-39886827)
[»] scaffold0388 (1 HSPs)
scaffold0388 (17-164)||(7188-7334)
[»] scaffold0263 (1 HSPs)
scaffold0263 (83-168)||(5799-5884)
[»] chr6 (12 HSPs)
chr6 (17-164)||(32719117-32719263)
chr6 (34-162)||(20820354-20820482)
chr6 (17-166)||(12779630-12779778)
chr6 (82-166)||(28551723-28551805)
chr6 (38-150)||(24849381-24849493)
chr6 (17-164)||(11179946-11180092)
chr6 (17-136)||(33590176-33590293)
chr6 (17-73)||(6687856-6687912)
chr6 (94-128)||(6855844-6855878)
chr6 (17-73)||(26289668-26289724)
chr6 (17-62)||(1567398-1567443)
chr6 (17-73)||(29054684-29054740)
[»] scaffold0128 (1 HSPs)
scaffold0128 (17-164)||(26497-26644)
[»] scaffold0119 (2 HSPs)
scaffold0119 (17-156)||(37238-37377)
scaffold0119 (17-153)||(30570-30706)
[»] scaffold0248 (1 HSPs)
scaffold0248 (17-166)||(12-160)
[»] scaffold0031 (1 HSPs)
scaffold0031 (17-126)||(93362-93470)
[»] scaffold0179 (1 HSPs)
scaffold0179 (25-164)||(968-1107)
[»] scaffold0991 (1 HSPs)
scaffold0991 (86-167)||(491-573)
[»] scaffold0051 (2 HSPs)
scaffold0051 (34-164)||(509-638)
scaffold0051 (82-164)||(3386-3468)
[»] scaffold0024 (1 HSPs)
scaffold0024 (17-134)||(44825-44941)
[»] scaffold0140 (2 HSPs)
scaffold0140 (82-165)||(19291-19375)
scaffold0140 (134-168)||(19571-19605)
[»] scaffold0136 (1 HSPs)
scaffold0136 (17-166)||(1839-1987)
[»] scaffold0717 (1 HSPs)
scaffold0717 (105-166)||(1783-1844)
[»] scaffold0028 (1 HSPs)
scaffold0028 (105-166)||(35271-35332)
[»] scaffold0006 (1 HSPs)
scaffold0006 (125-166)||(59670-59711)
[»] scaffold1163 (1 HSPs)
scaffold1163 (119-163)||(1931-1975)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 34280604 - 34280927
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  34280604 aaaaatacagtaatcacatgcattaatttatcattatctaaaaaaccaatcttttaattttttt-gaaagatttctccattttccctcatattttccacc 34280702  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaaagttatctttaaaaattatgatagtttgatccttatttgagattcttaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34280703 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaaagttatctttaaaaattatgatagtttgatccttatttgagattcttaa 34280802  T
Q  217 ggaccaaattgatattttttacatttttcaggaaccaaacaggtctctgtattttttccgaggtcattttcagtgtttagttttatttattacattagcc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||    
T  34280803 ggaccaaattgatattttttacatttttcaggaaccaaacaggtctctgtattttttccgagatcattttcagtatttagtgttatttattacattagcc 34280902  T
Q  317 tgttattagacagtgttaagtactt 341  Q
    |||||||||||||||||||||||||    
T  34280903 tgttattagacagtgttaagtactt 34280927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 3537323 - 3537471
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        ||||||||||| |||||||||||||||||||||||    
T  3537323 aaaaatatagtaatcatatgcattaatttatcattctctaaaaaactactcttttaaaaaattt-gaaagatttcttcattttccctcatattttccacc 3537421  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    ||||||||||||||| ||||  ||||||||||||| ||||||||||||||    
T  3537422 cctcaaagccttcccctcccttcccctccaaactcccaaacaaagcctaa 3537471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 50535071 - 50534928
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||||||||||||| |||||||||| | || |||||        |||||||||||||||||||||||||||||||||||    
T  50535071 aaaaatatagtaatcatatgcattagtttatcattttctaaaaaactactcatttaaatttttt-gaaagatttctccattttccctcatattttccacc 50534973  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaag 161  Q
     |||||||| |||  |||||| ||||||||||||| |||||||||    
T  50534972 actcaaagcattctgttcccctcccctccaaactcgcaaacaaag 50534928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 48908856 - 48908707
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||||||||||| ||||| ||||||||| | ||||    
T  48908856 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaaatttttt-gaaagatttctctatttttcctcatattctgcacc 48908758  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaa 167  Q
    |||||||||||| |||| ||  ||||||||||||| |||||||||||||||    
T  48908757 cctcaaagcctttcctttccttcccctccaaactcccaaacaaagcctaaa 48908707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 37674117 - 37673971
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| ||||||||  ||||||||||||||||||||| ||||||||        |||||||||||| ||||| ||||||||||| ||||    
T  37674117 aaaaataaagtaatcatatgcattaaattatcattctctaaaaaaccactcttttaaatttttt-gaaagatttctctatttttcctcatattttgcacc 37674019  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||||| |||| ||  ||||||||||||| |||| |||||||    
T  37674018 cctcaaagcctttcctttccttcccctccaaactcccaaagaaagcct 37673971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 38639696 - 38639844
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||||||||||| ||||| ||| ||||||| ||||    
T  38639696 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaaatttttt-gaaagatttctctatttttccttatattttgcacc 38639794  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||||||| | || ||  |||||||| |||| ||||||||||||||    
T  38639795 cctcaaagcctttcttttccttcccctccagactcccaaacaaagcctaa 38639844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 25 - 166
Target Start/End: Original strand, 44400824 - 44400964
Alignment:
Q  25 agtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacccctcaaag 124  Q
    |||||||| ||||||||  ||||| ||||||||||||| | ||||||||        |||||||||||| ||||| ||||||||||| ||||||||||||    
T  44400824 agtaatcatatgcattaaattatcgttctctaaaaaactactcttttaaatttttt-gaaagatttctctatttttcctcatattttgcacccctcaaag 44400922  T
Q  125 ccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||| |||| ||  ||||||||||||| ||||||||||||||    
T  44400923 cctttcctttccttcccctccaaactcccaaacaaagcctaa 44400964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 5939745 - 5939598
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| ||||||||  ||||||||||||||||||| | ||||||||        |||||||||||| || || ||| ||||||| ||||    
T  5939745 aaaaataaagtaatcatatgcattaaattatcattctctaaaaaactactcttttaaaaaattt-gaaagatttctctatatttccttatattttgcacc 5939647  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagccta 165  Q
    |||||||||||| |||| ||  ||||||||||||| |||||||||||||    
T  5939646 cctcaaagcctttcctttccttcccctccaaactcccaaacaaagccta 5939598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 47359495 - 47359558
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctcc 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  47359495 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttcccttcccctcc 47359558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 49183802 - 49183922
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttcca-c 115  Q
    ||||||| |||||||| |||||||| |||||||||||||| ||| | | ||||||||        ||||||||||||||||||||||||||||||||| |    
T  49183802 aaaaatatagtaatcatatgcattaatttatcattctctataaagctactcttttaaatttttt-gaaagatttctccattttccctcatattttccacc 49183900  T
Q  116 ccctcaaagccttcccttcccc 137  Q
    ||||||||||||| ||||||||    
T  49183901 ccctcaaagcctttccttcccc 49183922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 517596 - 517477
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||||||||||| ||||||||| ||||||||||||    
T  517596 aaaaatatagtaatcaaatgcattaatttatcattctctaaaaaactactcttttaa-aaattttgaaagatttctcaattttccctaatattttccacc 517498  T
Q  117 cctcaaagccttcccttcccc 137  Q
    |  | ||||||||||||||||    
T  517497 ctcccaagccttcccttcccc 517477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 25754076 - 25753931
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| ||||||||||| |||||||| | ||||||||        |||||||||||| ||||| ||||||||||| ||||    
T  25754076 aaaaataaagtaatcatatgcattaatttatcattctttaaaaaactactcttttaattttttt-gaaagatttctctatttttcctcatattttacacc 25753978  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    ||||||||| || ||||  |  ||||||||||||| ||||||||||||    
T  25753977 cctcaaagcatttcctt-tcatcccctccaaactcccaaacaaagcct 25753931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 33944596 - 33944456
Alignment:
Q  25 agtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacccctcaaag 124  Q
    |||||||| |||||||| ||||| ||||||||| |||| | ||||||||         ||||||||||| ||||| ||||||||||| ||||||||||||    
T  33944596 agtaatcatatgcattaatttattattctctaacaaactactcttttaaatttttta-aaagatttctctatttttcctcatattttgcacccctcaaag 33944498  T
Q  125 ccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||| |||| ||   |||||||||||| ||||||||||||||    
T  33944497 cctttcctttcctttccctccaaactcccaaacaaagcctaa 33944456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 51686623 - 51686769
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||  |  |||| ||         |||||||||| ||||||||||| |||||||||||    
T  51686623 aaaaatatagtaatcatatgcattaatttatcattctctaaaaaagtacactttcaaaaaattta-aaagatttcttcattttccctcgtattttccacc 51686721  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    | |||||||||| | ||| ||  |||||||||||| ||||||||||||    
T  51686722 cttcaaagcctttcattcaccttccctccaaactcgcaaacaaagcct 51686769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 16883891 - 16883974
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    ||||||||||||||||| ||| ||||||||||| |||| ||||||||||||||| | ||| | |||||||  |||||||||||||    
T  16883891 gaaagatttctccatttcccc-catattttccatcccttaaagccttcccttccgctcccttgcaaactcgtaaacaaagcctaa 16883974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 53888667 - 53888751
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||||||| ||||||||  |||||||   || | ||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  53888667 gaaagatttctcaattttcccctatatttttgtccacccaaagcctttccttcccctcccctccaaactcccaaacaaagcctaa 53888751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 34729238 - 34729153
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaaa 168  Q
    |||| |||||||||||||||||  ||||||||| ||| ||||||||||| |||  | | |||||||||||||||||||| |||||||    
T  34729238 gaaaaatttctccattttcccttgtattttccaaccc-caaagccttccattcttctctcctccaaactcacaaacaaatcctaaaa 34729153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 53664573 - 53664423
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctc-cattttccctcatattttccac 115  Q
    ||||||| |||||||| |||||||| |||| ||||||||||||||| | ||||||||        | ||||||||||  ||||| | ||||||||| ||     
T  53664573 aaaaataaagtaatcatatgcattaatttaccattctctaaaaaactactcttttaa-aatttttgtaagatttctcttatttttcttcatattttgcat 53664475  T
Q  116 ccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaa 167  Q
    ||||||||  ||| |||| ||  ||||||||||||| |||||||||||||||    
T  53664474 ccctcaaaatctttcctttccttcccctccaaactcgcaaacaaagcctaaa 53664423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 54126441 - 54126523
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    ||||||||||||||| |||||  |||||| ||||||| ||||||  |||||||||| ||||| ||| ||| ||||||||||||    
T  54126441 gaaagatttctccatgttcccctatatttcccaccccccaaagctctcccttcccctccccttcaatctcccaaacaaagcct 54126523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 35989269 - 35989350
Alignment:
Q  87 atttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaaa 168  Q
    |||||||||||||| || ||||||| ||||||||||||  |||| |||||| ||| | |||| ||| |||||||||||||||    
T  35989269 atttctccattttctctaatatttttcacccctcaaagtattccattcccctccctttcaaattcataaacaaagcctaaaa 35989350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 40118800 - 40118716
Alignment:
Q  82 gaaagatttctccattttccctc-atattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaa 167  Q
    ||||||||||||||||| ||||| ||||||  |||||| ||||||| | ||||||||  |||||||||||| |||||||||||||||    
T  40118800 gaaagatttctccattt-ccctcgatatttctcacccc-caaagcccttccttcccctaccctccaaactctcaaacaaagcctaaa 40118716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 45570908 - 45570762
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| ||||| ||||||||||| || | |||| |||        ||||||| |||  ||||| ||||||||||||||||    
T  45570908 aaaaatatagtaatcatatgcattaatttattattctctaaaatactactcttataaataaatt-gaaagatctctttatttttcctcatattttccacc 45570810  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    | ||||||||||  |||  || ||||||||||||  ||||| ||||||    
T  45570809 cttcaaagccttatcttttcctcccctccaaacttgcaaacgaagcct 45570762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 52620735 - 52620650
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaa 167  Q
    ||||||| |||||||||| |   ||||||  ||| || ||||||| |||| ||||| ||||||||||||| |||||||||||||||    
T  52620735 gaaagatatctccatttttctcaatatttcacactccccaaagccctcccctcccctcccctccaaactcccaaacaaagcctaaa 52620650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 41099617 - 41099549
Alignment:
Q  102 ctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaaagt 170  Q
    |||||||||||||||||||||||||||| | ||||  ||| || |||||| |||||||| ||| |||||    
T  41099617 ctcatattttccacccctcaaagccttctcatcccttcccatctaaactcccaaacaaaaccttaaagt 41099549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 50948323 - 50948471
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| || ||||| |||||||| |||| ||||||||||||||| | ||||||||        | |||||||||| ||||| | ||||||||| ||||    
T  50948323 aaaaataaagcaatcatatgcattaatttaccattctctaaaaaactactcttttaa-aaaatttgtaagatttctctatttttcttcatattttgcacc 50948421  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
     ||||||| ||| |||| ||   |||||||||||| |||| |||| ||||    
T  50948422 actcaaagtctttcctttcctttccctccaaactcgcaaataaagtctaa 50948471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 30121399 - 30121340
Alignment:
Q  105 atattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||| | ||||| ||||||| |||| ||||| ||||||||||||| ||||||||||||    
T  30121399 atatttccaaccccccaaagccctcccctcccctcccctccaaactcccaaacaaagcct 30121340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 21777536 - 21777456
Alignment:
Q  84 aagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||||||||||||||  | ||||  |||||| ||||||| ||||| |||| ||||| ||||||| ||||||||||||||    
T  21777536 aagatttctccattttcccctagatttctcacccc-caaagccctccct-cccctccccttcaaactctcaaacaaagcctaa 21777456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 36598443 - 36598501
Alignment:
Q  102 ctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaa 160  Q
    ||||||||| | |||| |||||| |||| ||||||| ||||||||||||| ||||||||    
T  36598443 ctcatatttccaacccttcaaagtcttctcttcccctcccctccaaactcccaaacaaa 36598501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 35283311 - 35283352
Alignment:
Q  125 ccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||| |||||||| ||||||||||||| ||||||||||||||    
T  35283311 cctttccttcccctcccctccaaactcccaaacaaagcctaa 35283352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 47789323 - 47789262
Alignment:
Q  105 atattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||| | ||||| ||||||| |||| ||||  ||||||||||||| ||||||||||||||    
T  47789323 atatttccaaccccccaaagccctcccctcccttcccctccaaactcccaaacaaagcctaa 47789262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 33281612 - 33281540
Alignment:
Q  93 ccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagccta 165  Q
    ||||||||||  |||||||| ||||  ||||| |||||||| ||  ||||||| ||||| |||||||||||||    
T  33281612 ccattttcccctatattttcaaccctccaaagtcttccctttccatcccctcctaactcccaaacaaagccta 33281540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 42668261 - 42668305
Alignment:
Q  120 caaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    ||||||| |||||||||  || |||||||||||||||||||||||    
T  42668261 caaagccctcccttcccttcctctccaaactcacaaacaaagcct 42668305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 46672415 - 46672447
Alignment:
Q  139 cccctccaaactcacaaacaaagcctaaaagtt 171  Q
    |||||||||||||||||||||||| ||||||||    
T  46672415 cccctccaaactcacaaacaaagcgtaaaagtt 46672447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 38505308 - 38505162
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| ||||||||  ||||||| |||||||||||||||||||| | ||||||||        |||||||||||||||||||||||| ||||||||||    
T  38505308 aaaaatatagtaatcatctgcattaatttatcattctctaaaaaactactcttttaaaaaattt-gaaagatttctccattttccctcaaattttccacc 38505210  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  38505209 cctcaaagccttcccttcccctcccctccaaactcccaaacaaagcct 38505162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 33871907 - 33871776
Alignment:
Q  34 atgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacccctcaaagccttccctt 133  Q
    |||||||| ||||| |||||||||||||| | ||||||||         ||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  33871907 atgcattaatttattattctctaaaaaactactcttttaaaaaattta-aaagatttctcaattttcccacatattttccacccctcaaagccttccctt 33871809  T
Q  134 ccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||| ||||||||||||| ||||||||||||||    
T  33871808 cccctcccctccaaactcgcaaacaaagcctaa 33871776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 42254085 - 42254233
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||| ||| |||||||||||||||||||| | ||||||||         ||||||||||| ||||| | ||||||||| ||||    
T  42254085 aaaaataaagtaatcatatgcgttaatttatcattctctaaaaaactactcttttaaatttttta-aaagatttctctatttttcttcatattttacacc 42254183  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||||||| |||| ||  ||||||||||||| ||||||||||||||    
T  42254184 cctcaaagcctttcctttccttcccctccaaactcccaaacaaagcctaa 42254233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 4058110 - 4057963
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||||||||||| ||||| ||||||||||| ||||    
T  4058110 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaaatttttt-gaaagatttctctatttttcctcatattttgcacc 4058012  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagccta 165  Q
    |||||||| |||  ||| ||  ||||||||||||  |||||||||||||    
T  4058011 cctcaaagtcttttctttccttcccctccaaacttccaaacaaagccta 4057963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 16805531 - 16805383
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||         ||| ||||||| ||||| ||||||||||| ||||    
T  16805531 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaatttttttaaaaa-atttctctatttttcctcatattttgcacc 16805433  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||| ||| | || ||  ||||||||||||| ||||||||||||||    
T  16805432 cctcaaagtctttcttttccttcccctccaaactcccaaacaaagcctaa 16805383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 13044264 - 13044375
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        ||| ||||||||||||||| |||||||||| ||||    
T  13044264 aaaaatatagtaatcatatgcattaatttatcattctctaaaaaactactcttttaattttttttgaaggatttctccattttctctcatatttttcacc 13044363  T
Q  117 cctcaaagcctt 128  Q
    |||| |||||||    
T  13044364 cctcgaagcctt 13044375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 35264844 - 35264709
Alignment:
Q  28 aatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacccctcaaagcct 127  Q
    |||||||  ||||| ||||||||||| |||||||| | ||||||||        |||||||||||| ||||||| ||||||||||||||||||||||| |    
T  35264844 aatcacaaacattaatttatcattctttaaaaaactactcttttaattttttt-gaaagatttctctattttccttcatattttccacccctcaaagcat 35264746  T
Q  128 tcccttccccacccctccaaactcacaaacaaagcct 164  Q
    | ||||| || ||||||||||||  ||||||||||||    
T  35264745 ttccttcacctcccctccaaactatcaaacaaagcct 35264709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 2826148 - 2826082
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaa 148  Q
    ||||||||||||||||||  |||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  2826148 gaaagatttctccattttttctcatattttccacccttcaaagctttcccttcccctcccctccaaa 2826082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 164
Target Start/End: Complemental strand, 23465943 - 23465818
Alignment:
Q  38 attagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacccctcaaagccttcccttcccc 137  Q
    |||| |||||||||||||||||||| | ||||||||        |||||||||  ||||||||||  |||||| | |||| |||||| ||||||||||||    
T  23465943 attaatttatcattctctaaaaaactattcttttaaaaaatgt-gaaagattttaccattttcccctatatttccaacccttcaaagtcttcccttcccc 23465845  T
Q  138 acccctccaaactcacaaacaaagcct 164  Q
     ||||||||||||| ||||||||||||    
T  23465844 tcccctccaaactcccaaacaaagcct 23465818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 42112904 - 42112771
Alignment:
Q  36 gcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctc-atattttccacccctcaaagccttcccttc 134  Q
    |||||||||||||||||||||||||| || ||||| ||        ||||||||||||||||| | ||| ||| || |||||||  ||| || | |||||    
T  42112904 gcattagtttatcattctctaaaaaaacactctttcaaagaaatgtgaaagatttctccattt-ctctctatacttcccaccccctaaaacccttccttc 42112806  T
Q  135 cccacccctccaaactcacaaacaaagcctaaaag 169  Q
    ||| ||||||||||||| |||||||||||||||||    
T  42112805 ccctcccctccaaactcccaaacaaagcctaaaag 42112771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 32650355 - 32650207
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| | |||||| |||||||| |||||||||||||||||||| | ||||| ||        | ||||||| || ||||| | ||||||||| ||||    
T  32650355 aaaaataaaataatcatatgcattaatttatcattctctaaaaaactactctttcaaaaatttt-gtaagatttatctatttttcttcatattttgcacc 32650257  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||| ||| |||| ||  ||||| ||||||| ||||||||||||||    
T  32650256 cctcaaagtctttcctttccttccccttcaaactcgcaaacaaagcctaa 32650207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 6746481 - 6746400
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    ||||||||||||||||||||| ||||||||| ||||| |||| || ||| ||||||  |||| ||||||| ||||||||||||    
T  6746481 gaaagatttctccattttcccccatattttcgaccccccaaaaccctccattcccc-tcccttcaaactcccaaacaaagcct 6746400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 34651930 - 34651866
Alignment:
Q  105 atattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaaag 169  Q
    |||||| | ||||||||||||| |||| ||||  ||||||||||||| |||||||||||||||||    
T  34651930 atatttccaacccctcaaagccatcccctcccttcccctccaaactcccaaacaaagcctaaaag 34651866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 30081153 - 30081236
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccc--cacccctccaaactcacaaacaaagcct 164  Q
    |||||||||||| ||||| |||||||||||||| |||| |||| |||||||||||  | |||||| |||||| |||| |||||||    
T  30081153 gaaagatttctcaatttttcctcatattttcca-cccttaaagacttcccttcccctctcccctctaaactcccaaataaagcct 30081236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 34670526 - 34670586
Alignment:
Q  107 attttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaa 167  Q
    |||||||||||||||||  |||| ||||| | | ||||||||||| |||||||||||||||    
T  34670526 attttccacccctcaaaatcttctcttcctctctcctccaaactctcaaacaaagcctaaa 34670586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 41471624 - 41471708
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    ||||||| ||||||||| |||  |||||| ||||||| ||||||| ||  ||||||  |||||||||||| |||||| |||||||    
T  41471624 gaaagatctctccatttccccctatatttcccaccccccaaagccctcaattccccttccctccaaactcccaaacagagcctaa 41471708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 45940374 - 45940318
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaa 73  Q
    ||||||| |||||||| |||||||| |||| ||||||||||||||| | ||||||||    
T  45940374 aaaaataaagtaatcatatgcattaatttaccattctctaaaaaactattcttttaa 45940318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 10591868 - 10591825
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaa 60  Q
    ||||||| |||||||| |||||||| ||||||||||||||||||    
T  10591868 aaaaatatagtaatcatatgcattaatttatcattctctaaaaa 10591825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 15748913 - 15748868
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaac 62  Q
    ||||||| |||||||| |||||||| |||| |||||||||||||||    
T  15748913 aaaaataaagtaatcatatgcattaatttaccattctctaaaaaac 15748868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 38470881 - 38470844
Alignment:
Q  100 ccctcatattttccacccctcaaagccttcccttcccc 137  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  38470881 ccctcatattttccacccctcaaagtcttcctttcccc 38470844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 38505501 - 38505546
Alignment:
Q  122 aagccttcccttccccacccctccaaactcacaaacaaagcctaaa 167  Q
    |||||||||| ||||  ||||||||||||| |||||||||||||||    
T  38505501 aagccttcccctcccttcccctccaaactcgcaaacaaagcctaaa 38505546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 47275878 - 47275821
Alignment:
Q  105 atattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagc 162  Q
    |||||||| ||||| ||||||| || ||||||  ||||||||||||| ||||||||||    
T  47275878 atattttcaaccccccaaagccctcacttcccttcccctccaaactcccaaacaaagc 47275821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 19791784 - 19791828
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaa 61  Q
    ||||||| |||||||| |||||||| ||| |||||||||||||||    
T  19791784 aaaaatatagtaatcatatgcattaatttttcattctctaaaaaa 19791828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 30081276 - 30081236
Alignment:
Q  126 cttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||| ||||  ||||||||||||||||||||||||||||    
T  30081276 cttcccctcccttcccctccaaactcacaaacaaagcctaa 30081236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 33872219 - 33872263
Alignment:
Q  120 caaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    ||||||| |||| ||||| ||||||||||||| ||||||||||||    
T  33872219 caaagccctcccctcccctcccctccaaactcgcaaacaaagcct 33872263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 34670305 - 34670345
Alignment:
Q  20 aatacagtaatcacatgcattagtttatcattctctaaaaa 60  Q
    |||| |||||||| |||||||| ||||||||||||||||||    
T  34670305 aatatagtaatcatatgcattactttatcattctctaaaaa 34670345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 36747204 - 36747164
Alignment:
Q  128 tcccttccccacccctccaaactcacaaacaaagcctaaaa 168  Q
    |||| ||||| ||||||||||||| ||||||||||||||||    
T  36747204 tcccctcccctcccctccaaactctcaaacaaagcctaaaa 36747164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 79587 - 79439
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaacc--aatcttttaannnnnnnngaaagatttctccattttccctcatattttcca 114  Q
    ||||||| |||||||| |||||||| ||||||||||||||||| ||   | ||||||||        |||||||||||||||||||||||||||||||||    
T  79587 aaaaatatagtaatcatatgcattaatttatcattctctaaaagactctactcttttaaaaaaaattgaaagatttctccattttccctcatattttcca 79488  T
Q  115 cccctcaaagccttcccttccccacccctccaaactcacaaacaaagcc 163  Q
    | ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  79487 ctcctcaaagccttcccttcccctcccctccaaactcgcaaacaaagcc 79439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 29584291 - 29584437
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| |  |||||||        ||||||||||| ||||||||||| |||||||||||    
T  29584291 aaaaatatagtaatcatatgcattaatttatcattctctaaaaaactacacttttaaaaaattt-gaaagatttcttcattttccctcgtattttccacc 29584389  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||||| ||||||||  |||||||||||| ||||||||||||    
T  29584390 cctcaaagcctttccttccccttccctccaaactcgcaaacaaagcct 29584437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 34336157 - 34336293
Alignment:
Q  27 taatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacccctcaaagcc 126  Q
    ||||||||||||||| ||| |||||||||||||||| | |||||||         |||||||||||||||||| |||||||||||||||||||||||| |    
T  34336157 taatcacatgcattaatttgtcattctctaaaaaactactctttta-caaaatttgaaagatttctccatttttcctcatattttccacccctcaaagtc 34336255  T
Q  127 ttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||| ||| || ||||||||||||||||||||||||||    
T  34336256 ttccattctcctcccctccaaactcacaaacaaagcct 34336293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 12506160 - 12506012
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| ||| |||| |||||||| ||||| ||||||||||| || | ||||||||        ||||||||||||||||||  || ||||||||||||    
T  12506160 aaaaatatagtcatcatatgcattaatttataattctctaaaatactactcttttaaatttttt-gaaagatttctccattttttcttatattttccacc 12506062  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    ||||||| ||||| ||||||| |||||||||| || ||||||||||||||    
T  12506061 cctcaaaaccttctcttcccctcccctccaaattcgcaaacaaagcctaa 12506012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 36837462 - 36837319
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||| ||||| | ||||||||        |||||||||||| ||||| ||||||||||| ||||    
T  36837462 aaaaataaagtaatcatatgcattaatttatcattctctataaaactactcttttaaatttttt-gaaagatttctctatttttcctcatattttgcacc 36837364  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaag 161  Q
    |||||||| ||| |||| ||  ||||||||||||| || ||||||    
T  36837363 cctcaaagtctttcctttccttcccctccaaactcccagacaaag 36837319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 23932512 - 23932367
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||| ||| |||||||||||||||||||| | ||||||||         ||||||||||| ||||| | ||||||||| ||||    
T  23932512 aaaaataaagtaatcatatgcgttaatttatcattctctaaaaaactactcttttaaatttttta-aaagatttctctatttttcttcatattttgcacc 23932414  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcc 163  Q
    |||||||||||| |||| ||  |||||| |||||| |||||||||||    
T  23932413 cctcaaagcctttcctttccttcccctcaaaactcccaaacaaagcc 23932367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 6943430 - 6943281
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| ||||||||||| ||||||| | |   ||| |        ||||||||| |||  |||||||||||||||||||     
T  6943430 aaaaatatagtaatcatatgcattaatttatcattctttaaaaaaactactattttaaattttttgaaagatttatccggtttccctcatattttccaca 6943331  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||||||||  || ||| ||||||||||||| ||||||||| ||||    
T  6943330 cctcaaagccttcaatttccctcccctccaaactctcaaacaaagtctaa 6943281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 41865535 - 41865458
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaa 160  Q
    ||||||||||| |||||||||||||||||| || |||||||||| |||  |||||| ||| ||||||||||||||||||    
T  41865535 gaaagatttcttcattttccctcatatttttca-ccctcaaagcattcatttcccctcccatccaaactcacaaacaaa 41865458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 13369817 - 13369772
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagcct 127  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||    
T  13369817 gaaagatttctcaattttctctcatattttccacccctcaaagcct 13369772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 21173822 - 21173707
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||| ||||||||||||||| | ||||||||        | |||||||||| ||||| | ||||||||| ||||    
T  21173822 aaaaataaagtaatcatatgcattaatttaccattctctaaaaaactactcttttaa-aaaatttgtaagatttctctatttttcttcatattttgcacc 21173724  T
Q  117 cctcaaagccttccctt 133  Q
    |||||||| ||| ||||    
T  21173723 cctcaaagtctttcctt 21173707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 43239907 - 43239962
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttcccc 137  Q
    |||||||||||||||||||||||||||||| || || ||||| |||||| ||||||    
T  43239907 gaaagatttctccattttccctcatatttttcaaccttcaaaaccttccattcccc 43239962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 23932724 - 23932773
Alignment:
Q  122 aagccttcccttccccacccctccaaactcacaaacaaagcctaaaagtt 171  Q
    |||||||||||||||  ||||||||||||| ||||||||||||| |||||    
T  23932724 aagccttcccttcccttcccctccaaactcgcaaacaaagcctataagtt 23932773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 1839720 - 1839636
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||||||| |||||||   ||| |||   |||| ||||||||| |||||||  ||||||||||||| ||||||||||||||    
T  1839720 gaaagatttctcaattttcctctataattttgtccccccaaagcctttccttcccttcccctccaaactcgcaaacaaagcctaa 1839636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 11226253 - 11226217
Alignment:
Q  131 cttccccacccctccaaactcacaaacaaagcctaaa 167  Q
    ||||||||||||||||||||| |||||||||||||||    
T  11226253 cttccccacccctccaaactcccaaacaaagcctaaa 11226217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 13227891 - 13227978
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagcct-----tcccttccccacccctccaaactcacaaacaaagcct 164  Q
    ||||||||||| |||||||||||||||||||||| | || ||| ||     |||| ||||| ||||||||||||| |||||| |||||    
T  13227891 gaaagatttcttcattttccctcatattttccactcatctaagtctttctctcccctcccctcccctccaaactctcaaacagagcct 13227978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 10604995 - 10604947
Alignment:
Q  118 ctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    ||||||| |||| ||||||| || |||||||||| ||||||||||||||    
T  10604995 ctcaaagtcttctcttcccctcctctccaaactctcaaacaaagcctaa 10604947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 13369884 - 13369840
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaa 61  Q
    ||||||| |||||||  |||||||| |||||||||||||||||||    
T  13369884 aaaaatatagtaatcgtatgcattaatttatcattctctaaaaaa 13369840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 38136798 - 38136652
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||||||||||| ||||||||||||||||| ||||    
T  38136798 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaaatttttt-gaaagatttctctattttccctcatattttgcacc 38136700  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||||| |||||||  ||||||||||||| ||||||||||||    
T  38136699 cctcaaagcctttccttcccttcccctccaaactcccaaacaaagcct 38136652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 29114207 - 29114061
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||||||||||| ||||| ||||||||||| ||||    
T  29114207 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactattcttttaaatttttt-gaaagatttctctatttttcctcatattttgcacc 29114109  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||||| |||| ||  ||||||||||||| ||||||||||||    
T  29114108 cctcaaagcctttcctttccttcccctccaaactcccaaacaaagcct 29114061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 33500637 - 33500786
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        ||||| |||||| ||||| || |||||||| ||||    
T  33500637 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaaaaaaaattgaaaggtttctctatttttccacatattttgcacc 33500736  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||||||| |||| ||  ||||||||||||| ||||||||||||||    
T  33500737 cctcaaagcctttcctttccttcccctccaaactcccaaacaaagcctaa 33500786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 22165661 - 22165582
Alignment:
Q  87 atttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  22165661 atttctcaattttccctcatattttccacctctcaaagccttcccttcctctcccctccaaactcacaaacaaagcctaa 22165582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 30198735 - 30198589
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||||||||||| ||||| ||||||||||| ||||    
T  30198735 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaaatttttt-gaaagatttctctatttttcctcatattttgcacc 30198637  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||||| |||| ||  || |||||||||| ||||||||||||    
T  30198636 cctcaaagcctttcctttccttcctctccaaactcccaaacaaagcct 30198589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 49668078 - 49667929
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| ||||||||||| |||||||| | ||||||||        || | |||||||||||||||||||||||||||| |    
T  49668078 aaaaatatagtaatcatatgcattaatttatcattctttaaaaaactactcttttaaatttt---gacacatttctccattttccctcatattttccatc 49667982  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaaag 169  Q
    |||||||  |||||||| |||  ||  ||||||||||||||||||||||||||    
T  49667981 cctcaaaatcttccctttcccttcctgccaaactcacaaacaaagcctaaaag 49667929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 12708798 - 12708650
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||| ||| | ||||||||        |||||||||||| ||||| ||||||||||| ||||    
T  12708798 aaaaataaagtaatcatatgcattaatttatcattctctaaataactactcttttaaatttttt-gaaagatttctctatttttcctcatattttgcacc 12708700  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||||||| |||| ||   |||||||||||| ||||||||| ||||    
T  12708699 cctcaaagcctttcctttcctttccctccaaactcccaaacaaagtctaa 12708650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 16461627 - 16461547
Alignment:
Q  83 aaagatttctccattttccctcatattttccacccctcaaagccttc-ccttccccacccctccaaactcacaaacaaagc 162  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||| | |||||| || |||||||||| ||||||||||    
T  16461627 aaagatttctcaattttccctcatattttccacccctcaaagctttctctttcccctcctctccaaactcgcaaacaaagc 16461547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 35959349 - 35959430
Alignment:
Q  83 aaagatttctccattttccctc-atattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||||| ||| |||| ||||||||||||| ||||||||||||    
T  35959349 aaagatttctcca-tttccctctatattttccaccccccaaagcctttcctacccctcccctccaaactcccaaacaaagcct 35959430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 41709018 - 41708933
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaa 167  Q
    |||||||||||||||| | ||||||||||| ||  |||||||| ||||||||||||  |||||||||||| |||| ||||||||||    
T  41709018 gaaagatttctccattctacctcatatttttcaatcctcaaagtcttcccttccccttccctccaaactcgcaaagaaagcctaaa 41708933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 16318734 - 16318883
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||| ||||||||||||||| | | || |||        | |||||||||| ||||| | ||||||||| ||||    
T  16318734 aaaaataaagtaatcatatgcattaatttaccattctctaaaaaactactattctaagaaattt-gtaagatttctctatttttcttcatattttgcacc 16318832  T
Q  117 cc-tcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    || |||||||||| |||| ||  || |||||||||||||||||||||||||    
T  16318833 ccctcaaagcctttcctttccttcctctccaaactcacaaacaaagcctaa 16318883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 51151954 - 51151883
Alignment:
Q  95 attttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    ||||| ||| |||||||||||  ||||||||||| |||||||| |||||||||| || ||||||||||||||    
T  51151954 atttttccttatattttccacttctcaaagcctttccttcccctcccctccaaaatcgcaaacaaagcctaa 51151883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 50494618 - 50494476
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| | |||||||||||||||||| |  |||||||        |||||| ||||| |||||||||||||||||  | |    
T  50494618 aaaaatatagtaatcatatgcattaatctatcattctctaaaaaactatccttttaaatttttt-gaaagaattctctattttccctcatattttttatc 50494520  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaa 160  Q
    | |||||| ||| |||||||  || |||||||||| ||||||||    
T  50494519 cttcaaagtctttccttcccttccgctccaaactcccaaacaaa 50494476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 16423038 - 16423135
Alignment:
Q  25 agtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacccctcaaa 123  Q
    |||||||| || ||||| |||||||||||||||||||| | ||||||||        |||||||||||| ||||||||||||||||||| || ||||||    
T  16423038 agtaatcatatacattaatttatcattctctaaaaaactattcttttaattttttt-gaaagatttctctattttccctcatattttccgccgctcaaa 16423135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 28175428 - 28175372
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaa 73  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||    
T  28175428 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaa 28175372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 48620494 - 48620545
Alignment:
Q  115 cccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||| ||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  48620494 ccccccaaagcctttccttcccctcccctccaaactcgcaaacaaagcctaa 48620545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 50784258 - 50784179
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaag 161  Q
    ||||||||||| || |||| |||||||||| |||||||||||||  ||  || ||| ||||||||||||| |||||||||    
T  50784258 gaaagatttcttcaatttctctcatatttttcacccctcaaagcactcattttccctcccctccaaactcgcaaacaaag 50784179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 42650813 - 42650895
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    ||||||||| || ||||| ||  ||||||  |||||| ||||||| | |||||||  ||||||||||||||||||||||||||    
T  42650813 gaaagatttatcaatttttccctatatttctcaccccccaaagcccttccttcccttcccctccaaactcacaaacaaagcct 42650895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 55510122 - 55510167
Alignment:
Q  119 tcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||||| |||||| ||||||||||||| ||||||||||||    
T  55510122 tcaaagccttccattcccctcccctccaaactcccaaacaaagcct 55510167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 368174 - 368218
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaa 61  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||    
T  368174 aaaaatatagtaatcatatgcattaatttatcattctctaaaaaa 368218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 41844648 - 41844707
Alignment:
Q  114 acccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaaagttat 173  Q
    ||||| ||||| | |||| ||||  ||||||||||||| |||||||||||||||||||||    
T  41844648 accccccaaagtcctcccctcccttcccctccaaactcccaaacaaagcctaaaagttat 41844707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 22845377 - 22845419
Alignment:
Q  122 aagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    ||||| |||||||||||||||||||||||| |||||| |||||    
T  22845377 aagccctcccttccccacccctccaaactcccaaacagagcct 22845419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 31530227 - 31530289
Alignment:
Q  105 atattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaa 167  Q
    |||||||  ||||| ||||||| |||| ||||  ||||||||||||| |||||||||||||||    
T  31530227 atatttttaaccccccaaagccctcccctcccttcccctccaaactctcaaacaaagcctaaa 31530289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 46176836 - 46176772
Alignment:
Q  84 aagatttctccattttccctcat-attttccacccctcaaagccttcccttccccacccctccaaac 149  Q
    ||||||||||||||| ||||| | |||||||||||| ||||| |||||||||||| |||||||||||    
T  46176836 aagatttctccattt-ccctctttattttccacccc-caaagtcttcccttcccctcccctccaaac 46176772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 368290 - 368327
Alignment:
Q  125 ccttcccttccccacccctccaaactcacaaacaaagc 162  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  368290 ccttcccttcccctcccctccaaactcccaaacaaagc 368327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 3126889 - 3126828
Alignment:
Q  105 atattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||| ||||| ||||||  |||||||||  ||||||||||||| |||||||| |||||    
T  3126889 atattttcaaccccccaaagctctcccttcccttcccctccaaactcccaaacaaaacctaa 3126828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 20534135 - 20534192
Alignment:
Q  109 tttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||| ||| ||||||| |||| ||||  ||||||||||||| ||||||||||||||    
T  20534135 tttccaacccccaaagccctcccctcccttcccctccaaactcccaaacaaagcctaa 20534192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 30863044 - 30863077
Alignment:
Q  128 tcccttccccacccctccaaactcacaaacaaag 161  Q
    |||||||||| |||||||||||||||||||||||    
T  30863044 tcccttcccctcccctccaaactcacaaacaaag 30863077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 7182134 - 7182102
Alignment:
Q  38 attagtttatcattctctaaaaaaccaatcttt 70  Q
    ||||||||||||||||||||||||||| |||||    
T  7182134 attagtttatcattctctaaaaaaccattcttt 7182102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 31418826 - 31418774
Alignment:
Q  116 ccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaaa 168  Q
    ||||||||| | | |||||| | ||||||||||||| ||||||||||||||||    
T  31418826 ccctcaaagtcattccttcctctcccctccaaactctcaaacaaagcctaaaa 31418774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 44076509 - 44076473
Alignment:
Q  125 ccttcccttccccacccctccaaactcacaaacaaag 161  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  44076509 ccttcccttcccctcccctccaaactcgcaaacaaag 44076473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 14570006 - 14569866
Alignment:
Q  25 agtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacccctcaaag 124  Q
    |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  14570006 agtaatcatatgcattaatttatcattctctaaaaaacaactcttttaaatttttt-gaaagatttctccattttccctcatattttccacccctcaaag 14569908  T
Q  125 cc-ttcccttccccaccc-ctccaaactcacaaacaaagcct 164  Q
    || |||| |||||| ||| |||||||||||||||||||||||    
T  14569907 cctttccgttcccctcccgctccaaactcacaaacaaagcct 14569866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 10843151 - 10843295
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||||||||||| ||||| ||||||||||| ||||    
T  10843151 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaaatttttt-gaaagatttctctatttttcctcatattttgcacc 10843249  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagc 162  Q
    |||||||||||| |||  ||  ||||||||||||| ||||||||||    
T  10843250 cctcaaagcctttcctctccttcccctccaaactcccaaacaaagc 10843295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 39649688 - 39649834
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| ||||||||  ||||||||||||||||||| | | ||||||        |||||||||||| ||||| ||||||||||| ||||    
T  39649688 aaaaataaagtaatcatatgcattaaattatcattctctaaaaaactact-ttttaaaattttttgaaagatttctctatttttcctcatattttgcacc 39649786  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||||| |||| ||  ||||||||||||  ||||||||||||    
T  39649787 cctcaaagccttacctttccttcccctccaaactaccaaacaaagcct 39649834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 38568279 - 38568197
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||  |||| || |||||||||| ||||||||||||    
T  38568279 gaaagatttcttcattttccctcatattttccacccctcgaagccttcccccccccccctctccaaactcgcaaacaaagcct 38568197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 5772694 - 5772545
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||| ||||||||||||||| | ||||||||        | ||| |||||| ||||| | ||||||||| ||||    
T  5772694 aaaaataaagtaatcatatgcattaatttaccattctctaaaaaactactcttttaaaaaattt-gtaaggtttctctatttttcttcatattttgcacc 5772596  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaa 167  Q
    |||||||| ||| |||| ||  ||||||||||||| |||||||||||||||    
T  5772595 cctcaaagtctttcctttccttcccctccaaactcgcaaacaaagcctaaa 5772545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 13569479 - 13569621
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| ||||||||  ||||||||||||||||||| | ||||||||         ||||||||||| ||||| ||||||||||| ||||    
T  13569479 aaaaataaagtaatcatatgcattaaattatcattctctaaaaaactactcttttaaaaaattta-aaagatttctctatttttcctcatattttgcacc 13569577  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaa 160  Q
    | |||||| ||| |||| ||  ||||||||||||| ||||||||    
T  13569578 catcaaagtctttcctttccttcccctccaaactcccaaacaaa 13569621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 35683437 - 35683290
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||| ||||||||||||||| | ||||||||        | |||||||||| ||||| | ||||||||| ||||    
T  35683437 aaaaataaagtaatcatatgcattaatttaccattctctaaaaaactactcttttaaaaaattt-gtaagatttctctatttttcttcatattttgcacc 35683339  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagccta 165  Q
    |||||||||||| | ||  |  ||||||||||||| |||||||||||||    
T  35683338 cctcaaagcctttcattttcttcccctccaaactcgcaaacaaagccta 35683290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 18671139 - 18671209
Alignment:
Q  92 tccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    ||||||||||||| |||||||||||| ||||||||||||||| ||| ||||||||||||||| ||||||||||    
T  18671139 tccattttccctcgtattttccacccttcaaagccttccctt-ccctcccctccaaactcac-aacaaagcct 18671209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 10955589 - 10955507
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||||||||||| ||||||||||| ||| ||||||||| || ||||| |  || |||||||||| |||| |||||||    
T  10955589 gaaagatttctccatttttcctcatatttttcactcctcaaagcttttccttctcttcctctccaaactctcaaataaagcct 10955507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 9684689 - 9684607
Alignment:
Q  84 aagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||  ||||||||||  |||||| | ||||  | |||||||||||||||  ||||||||||||| ||||||||||||||    
T  9684689 aagattttcccattttcccctatatttccaaccctcctaagccttcccttcccttcccctccaaactcccaaacaaagcctaa 9684607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 32824831 - 32824913
Alignment:
Q  83 aaagatttctccattttccctcatattttcc-acccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||||||||| |||  ||||||||| | ||||||||||| |||||||||| |||||   ||||| ||||||||||||    
T  32824831 aaagatttctccatttccccctatattttcccatccctcaaagccctcccttcccctcccctgtgaactcccaaacaaagcct 32824913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 10295690 - 10295751
Alignment:
Q  105 atattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||| ||||| ||||||| |||| ||||  ||||||||||||| ||||||||||||||    
T  10295690 atattttcaaccccccaaagccctcccctcccttcccctccaaactcccaaacaaagcctaa 10295751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 18670947 - 18670902
Alignment:
Q  122 aagccttcccttccccacccctccaaactcacaaacaaagcctaaa 167  Q
    |||||||||| ||||  |||||||||||||||||||||||||||||    
T  18670947 aagccttcccctcccttcccctccaaactcacaaacaaagcctaaa 18670902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 8944162 - 8944206
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaa 61  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||    
T  8944162 aaaaatatagtaatcatatgcattaatttatcattctctaaaaaa 8944206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 8944251 - 8944327
Alignment:
Q  95 attttccctcatattttccacccctcaaagcc-----ttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    ||||| ||||||||||||||||||||||||||     ||| | ||||| ||||||||||||| |||||||| |||||    
T  8944251 atttttcctcatattttccacccctcaaagcctctcattcgcctcccctcccctccaaactcgcaaacaaaacctaa 8944327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 18675687 - 18675631
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaa 73  Q
    ||||||| |||||| | |||||||| |||||||||||||||||||| | ||||||||    
T  18675687 aaaaatatagtaattatatgcattaatttatcattctctaaaaaactactcttttaa 18675631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 39027927 - 39027990
Alignment:
Q  88 tttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactc 151  Q
    ||||| |||||| |||| |||||||||||||||||| | |||| || ||| |||||||||||||    
T  39027927 tttcttcatttttcctcctattttccacccctcaaaactttccatttccctcccctccaaactc 39027990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 43496796 - 43496717
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaag 161  Q
    |||||||||||| |||| ||| ||||||| ||| ||| |||| || || | ||||| ||||||||||||| |||||||||    
T  43496796 gaaagatttctctatttccccccatatttcccaacccccaaaaccctctcatcccctcccctccaaactcgcaaacaaag 43496717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 35708657 - 35708611
Alignment:
Q  120 caaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    ||||||||| |||||||| ||||| ||||||| ||||||||||||||    
T  35708657 caaagcctttccttcccctccccttcaaactcccaaacaaagcctaa 35708611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 10438162 - 10438203
Alignment:
Q  87 atttctccattttccctcatattttccacccctcaaagcctt 128  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||    
T  10438162 atttctctatttttcctcatattttgcacccctcaaagcctt 10438203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 26149741 - 26149773
Alignment:
Q  38 attagtttatcattctctaaaaaaccaatcttt 70  Q
    ||||||||||||||||||||||||| |||||||    
T  26149741 attagtttatcattctctaaaaaactaatcttt 26149773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 43572508 - 43572360
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||||||||||| ||||| ||||||||||| ||||    
T  43572508 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaaatttttt-gaaagatttctctatttttcctcatattttgcacc 43572410  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||||||| |||| ||  ||||||||||||| ||||||||||||||    
T  43572409 cctcaaagcctttcctttccttcccctccaaactcccaaacaaagcctaa 43572360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 166
Target Start/End: Original strand, 31082926 - 31083063
Alignment:
Q  25 agtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacccctcaaag 124  Q
    |||||||| |||||||| |||||||||||||||||||||| || |||||        || |||||||||||||||||||||||||||||||   ||||||    
T  31082926 agtaatcatatgcattaatttatcattctctaaaaaaccactcatttaattttttt-gatagatttctccattttccctcatattttccac---tcaaag 31083021  T
Q  125 ccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||| |||||||| ||||||||||||| ||||||||||||||    
T  31083022 cctttccttcccctcccctccaaactcccaaacaaagcctaa 31083063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 41100079 - 41099928
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| ||||| || ||| | || |||||||||||||||||||||| ||||||||         |||||||||| |||||||||||||||||| ||||    
T  41100079 aaaaatatagtaaccatatggagtaatttatcattctctaaaaaaccactcttttaaaattttta-aaagatttcttcattttccctcatatttttcacc 41099981  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaaag 169  Q
    ||||||||||||||| ||||| | |||||||| || |||||||||||||||||    
T  41099980 cctcaaagccttcccctcccctctcctccaaattcccaaacaaagcctaaaag 41099928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 1364940 - 1365092
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||| ||||||||||||||| | ||||||||        | |||||||||| ||||| | ||||||||| ||||    
T  1364940 aaaaataaagtaatcatatgcattaatttaccattctctaaaaaactactcttttaaaaaattt-gtaagatttctctatttttcttcatattttgcacc 1365038  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaaagt 170  Q
    |||||||||||| |||| ||  ||||||||||||| ||||||||||||||||||    
T  1365039 cctcaaagcctttcctttccttcccctccaaactcgcaaacaaagcctaaaagt 1365092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 13018442 - 13018294
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||||||||||| |||||  | |||||||| ||||    
T  13018442 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaaaaaaatt-gaaagatttctctattttttcacatattttgcacc 13018344  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||||||| |||| ||  ||||||||||||| ||||||||||||||    
T  13018343 cctcaaagcctttcctttccttcccctccaaactcccaaacaaagcctaa 13018294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 37194384 - 37194532
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||||||||||| ||||| ||||||||||| ||||    
T  37194384 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaa-attttttgaaagatttctctatttttcctcatattttgcacc 37194482  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||||||| | ||  |   |||||||||||| ||||||||||||||    
T  37194483 cctcaaagcctttcattttctttccctccaaactcccaaacaaagcctaa 37194532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 39205134 - 39205282
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| || ||||| ||||||| |||||||||||| | ||||||||        ||||||||||| ||||||||||||||  |||||||    
T  39205134 aaaaatatagtaatcatatacattaatttatcactctctaaaaaactactcttttaaatttttt-gaaagatttctacattttccctcatacattccacc 39205232  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    ||| ||||||||||||||||| ||||| ||||||| |||||  |||||||    
T  39205233 cctaaaagccttcccttcccctccccttcaaactcgcaaacgcagcctaa 39205282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 40212120 - 40212264
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||  |||||||| |||||||||||||||||||| | ||||||||        |||||||||||| ||||| ||||||||||| ||||    
T  40212120 aaaaataaagtaatcgtatgcattaatttatcattctctaaaaaactactcttttaaaattttt-gaaagatttctctatttttcctcatattttgcacc 40212218  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagc 162  Q
    ||||||||||||  ||| ||  ||||||||||||| ||||||||||    
T  40212219 cctcaaagccttttctttccttcccctccaaactcccaaacaaagc 40212264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 37 - 164
Target Start/End: Original strand, 7367714 - 7367841
Alignment:
Q  37 cattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacccctcaaagccttcccttccc 136  Q
    ||||| ||||||||||||||||||| | ||  |||||        ||||||||||| |||||||||||||||||||||| ||  |||||||||||||||     
T  7367714 cattaatttatcattctctaaaaaaactattctttaaaaaaatgtgaaagatttcttcattttccctcatattttccactccctaaagccttcccttcca 7367813  T
Q  137 cacccctccaaactcacaaacaaagcct 164  Q
    | ||||||||||||| ||||||||||||    
T  7367814 ctcccctccaaactctcaaacaaagcct 7367841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 21626242 - 21626395
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| | |||||| |||||||| |||||||||||||||||| | | |||||||         |||| ||||||||||||| ||||||||||| ||||    
T  21626242 aaaaataaaataatcatatgcattaatttatcattctctaaaaacctactctttta-gaaaatttgaaaaatttctccatttttcctcatattttgcacc 21626340  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaaagtt 171  Q
    |||||||||||| | || ||  ||||| ||||||| |||||||||||||| ||||    
T  21626341 cctcaaagcctttcatttccttccccttcaaactcccaaacaaagcctaagagtt 21626395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 15234767 - 15234694
Alignment:
Q  87 atttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaa 160  Q
    |||||||||||||||||| ||||||||||||||||||| |||| ||||||| ||||||||||||| ||| ||||    
T  15234767 atttctccattttccctcgtattttccacccctcaaagtcttctcttcccctcccctccaaactcgcaatcaaa 15234694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 11515161 - 11515307
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||| ||||||||||||||| | ||||||||        | |||||||||| ||||| | ||||||||| |||     
T  11515161 aaaaataaagtaatcatatgcattaatttaccattctctaaaaaactactcttttaaaaaattt-gtaagatttctctatttttcttcatattttgcact 11515259  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    ||||||| |||| |||| ||  ||||||||||||| ||||||||||||    
T  11515260 cctcaaaacctttcctttccttcccctccaaactcgcaaacaaagcct 11515307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 35550105 - 35549982
Alignment:
Q  34 atgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacccctcaaagccttccctt 133  Q
    |||||||| |||||||||||||||||||| | ||||||||         |||||||| || |||  ||||||||||||||||||||||||||||| | ||    
T  35550105 atgcattaatttatcattctctaaaaaactattcttttaaatttttta-aaagatttttcaatta-ccctcatattttccacccctcaaagcctttcatt 35550008  T
Q  134 ccccacccctccaaactcacaaacaa 159  Q
    |||| ||||||||||||| |||||||    
T  35550007 cccctcccctccaaactctcaaacaa 35549982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 16813740 - 16813854
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| ||||| |||||||||||||||| ||||||||         ||||||||||  ||||||||||||||||||||||    
T  16813740 aaaaatatagtaatcatatgcattaatttat-attctctaaaaaaccactcttttaaatttttta-aaagatttctttattttccctcatattttccacc 16813837  T
Q  117 cctcaaagccttccctt 133  Q
    | ||||||| |||||||    
T  16813838 cttcaaagctttccctt 16813854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 16853019 - 16853133
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| ||||| |||||||||||||||| ||||||||         ||||||||||  ||||||||||||||||||||||    
T  16853019 aaaaatatagtaatcatatgcattaatttat-attctctaaaaaaccactcttttaaatttttta-aaagatttctttattttccctcatattttccacc 16853116  T
Q  117 cctcaaagccttccctt 133  Q
    | ||||||| |||||||    
T  16853117 cttcaaagctttccctt 16853133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 15803353 - 15803435
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||||| ||||||||  ||||||  | |||| ||||||||| |||||||| ||||||||||||| ||||||||||||    
T  15803353 gaaagatttctcaattttcccctatatttctctccccccaaagcctttccttcccctcccctccaaactcccaaacaaagcct 15803435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 1270667 - 1270531
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaa-tcttttaannnnnnnngaaagatttctccattttccctcatattttccac 115  Q
    ||||||| |||||||| |||||||| ||||||||||||||||||| | | ||||||||         ||||||||||| ||| |||||||||||||| |     
T  1270667 aaaaatatagtaatcatatgcattaatttatcattctctaaaaaaactactcttttaaaaaattta-aaagatttctcaattctccctcatattttctat 1270569  T
Q  116 ccctcaaagccttcccttccccacccctccaaactcac 153  Q
    ||||||||| ||| | ||| || |||||||||||||||    
T  1270568 ccctcaaagtctttcattctcctcccctccaaactcac 1270531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 26905921 - 26906073
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaat---cttttaannnnnnnn--gaaagatttctccattttccctcatatttt 111  Q
    ||||||| |||||||| ||||||||  ||||||||||||||||||| |||   |||||||          |||||||||||| ||||| |||||||||||    
T  26905921 aaaaataaagtaatcatatgcattaaattatcattctctaaaaaactaatattcttttaaatttttttttgaaagatttctctatttttcctcatatttt 26906020  T
Q  112 ccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
     ||||||||||||| || |||| ||  ||| ||||||||| |||| |||||||    
T  26906021 gcacccctcaaagcttttcctttccttcccatccaaactcccaaagaaagcct 26906073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 34757787 - 34757836
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttccc 131  Q
    |||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  34757787 gaaagatttctcaattttctctcatattttccacccctcaaaaccttccc 34757836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 21835050 - 21835158
Alignment:
Q  43 tttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccc 142  Q
    ||||||||||||||||||| || ||||| ||        |||||| || |||||||||| | ||||||| |||||||||||||||| | | |||| ||||    
T  21835050 tttatcattctctaaaaaaacactctttcaaaaaaatgtgaaagaattttccattttccttaatatttttcacccctcaaagcctttcttacccctcccc 21835149  T
Q  143 tccaaactc 151  Q
    |||||||||    
T  21835150 tccaaactc 21835158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 30072345 - 30072265
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagc 162  Q
    ||||||| ||||||||| | |||||||||| ||||||||||| |||| |||||| |  |||||||||||| ||| ||||||    
T  30072345 gaaagatctctccatttcctctcatattttacacccctcaaaacctttccttcctcttccctccaaactcgcaagcaaagc 30072265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 41655284 - 41655225
Alignment:
Q  105 atattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    ||||||| |||||||| ||||||||||  |||| ||||||||||||| ||||||||||||    
T  41655284 atatttttcacccctcgaagccttcccaccccctcccctccaaactcccaaacaaagcct 41655225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 28539327 - 28539273
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccc 136  Q
    ||||||||||| |||||||| ||||||||||||||||| |||| |||||| ||||    
T  28539327 gaaagatttcttcattttccttcatattttccaccccttaaagtcttcccctccc 28539273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 36567155 - 36567094
Alignment:
Q  105 atattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||| ||||| ||||||| |||| ||||  |||||||||||||||| |||||||||||    
T  36567155 atattttcaaccccccaaagccctcccctcccttcccctccaaactcacagacaaagcctaa 36567094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 170
Target Start/End: Complemental strand, 16518989 - 16518902
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaaagt 170  Q
    |||||||||||||||||  | |  ||||| ||||||  |||||| || |||||||| ||||||||| ||| ||||||||||||||||||    
T  16518989 gaaagatttctccatttctctttgtatttaccaccctccaaagcttttccttcccctcccctccaa-ctcccaaacaaagcctaaaagt 16518902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 43190459 - 43190378
Alignment:
Q  83 aaagatttctccattttccctcata-ttttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    ||||||||||| ||||| ||||||| |||||||||||| ||||||||  ||||||  | | ||||||||| ||||||||||||    
T  43190459 aaagatttctctatttttcctcatatttttccacccct-aaagccttttcttcccttcacttccaaactcccaaacaaagcct 43190378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 44137296 - 44137342
Alignment:
Q  120 caaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    ||||||| |||||||||  ||||||||||||| ||||||||||||||    
T  44137296 caaagccctcccttcccttcccctccaaactcccaaacaaagcctaa 44137342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 16625673 - 16625632
Alignment:
Q  123 agccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||| |||||||||| ||||||||||||| ||||||||||||    
T  16625673 agccctcccttcccctcccctccaaactcccaaacaaagcct 16625632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 36870418 - 36870499
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttcc-ccacccctccaaactcacaaacaaagc 162  Q
    |||| ||||||| ||||||||  ||||||| | |||| ||||||||| |||||| || ||||||||||||| |||| |||||    
T  36870418 gaaaaatttctcaattttcccctatatttttctccccccaaagcctttccttcctcctcccctccaaactcccaaataaagc 36870499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 11514958 - 11514914
Alignment:
Q  122 aagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||||| ||||  ||||||||||||| ||||||||||||||    
T  11514958 aagccttcccctcccttcccctccaaactcgcaaacaaagcctaa 11514914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 31584667 - 31584583
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||||||| ||||| |   ||||||  | |||||||||| |||  ||||||| ||||||||||||| |||||||| |||||    
T  31584667 gaaagatttctcaatttttctctatatttctctcccctcaaagtcttttcttcccctcccctccaaactctcaaacaaaacctaa 31584583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 40211899 - 40211871
Alignment:
Q  141 cctccaaactcacaaacaaagcctaaaag 169  Q
    |||||||||||||||||||||||||||||    
T  40211899 cctccaaactcacaaacaaagcctaaaag 40211871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 37649580 - 37649432
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||||||||||| ||||| ||||||||||| ||||    
T  37649580 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaattttttt-gaaagatttctctatttttcctcatattttgcacc 37649482  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||||||| |||| ||  ||||||||||||| ||||||||||||||    
T  37649481 cctcaaagcctttcctttccttcccctccaaactcccaaacaaagcctaa 37649432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 36886986 - 36887132
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| |  |||||||        ||||||||||| ||||||||||| |||||||||||    
T  36886986 aaaaatatagtaatcatatgcattaatttatcattctctaaaaaactacacttttaaaaaattt-gaaagatttcttcattttccctcgtattttccacc 36887084  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||| ||| ||||||||  |||||||||||| ||||||||||||    
T  36887085 cctcaaagtctttccttccccttccctccaaactcgcaaacaaagcct 36887132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 52068111 - 52067960
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||||||||||| ||||| ||||||||||| ||||    
T  52068111 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaaatttttt-gaaagatttctctatttttcctcatattttgcacc 52068013  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaaag 169  Q
    |||||||||||| | || ||  ||||||||||||  |||||||||||| ||||    
T  52068012 cctcaaagcctttcttttccttcccctccaaacttccaaacaaagccttaaag 52067960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 14439751 - 14439834
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagccta 165  Q
    |||||||||||||||||| ||||||||||| |||||||||||| ||||| || ||| ||||||||||||| |||||||||||||    
T  14439751 gaaagatttctccatttttcctcatatttttcacccctcaaagtcttccgtttccctcccctccaaactcgcaaacaaagccta 14439834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 2909234 - 2909380
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| || ||||| |||||||||||||||||||| | ||||||||        ||||||| |||| |||||  |||||||||| ||||    
T  2909234 aaaaataaagtaatcatatacattaatttatcattctctaaaaaactactcttttaaatttttt-gaaagatctctctattttttctcatattttgcacc 2909332  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||||| |||| ||  ||||||||||||| ||||||||||||    
T  2909333 cctcaaagcctttcctttccttcccctccaaactcccaaacaaagcct 2909380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 24369163 - 24369081
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||||||||||| |||| |||||| |||||||||||| |||||||||| | |||||| |||||||||||||||||||    
T  24369163 gaaagatttctccatttttcctcgtattttgcacccctcaaagtcttcccttcctctcccctctaaactcacaaacaaagcct 24369081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 34154302 - 34154156
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||||||||||| |||||  |||||||||| ||||    
T  34154302 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaaatttttt-gaaagatttctctattttttctcatattttgcacc 34154204  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||  ||| |||| ||  ||||||||||||| ||||||||||||    
T  34154203 cctcaaaatctttcctttccttcccctccaaactcccaaacaaagcct 34154156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 162
Target Start/End: Original strand, 69868 - 69992
Alignment:
Q  37 cattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacccctcaaagccttcccttccc 136  Q
    ||||| |||||||||||||||||||| | ||||||||        ||||||||||| |||||||||||||||||| |||||||||||  ||| ||||||     
T  69868 cattaatttatcattctctaaaaaactactcttttaaaaaaatt-gaaagatttcttcattttccctcatatttttcacccctcaaaatctttccttcct 69966  T
Q  137 cacccctccaaactcacaaacaaagc 162  Q
    | |||||||||| |||||||||||||    
T  69967 ctcccctccaaattcacaaacaaagc 69992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 666393 - 666542
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaa-aaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccac 115  Q
    ||||||| |||||||| |||||||| |||||||||||||||| |||| | ||||||||         |||||||||| ||||||||||||||||||||||    
T  666393 aaaaatatagtaatcatatgcattaatttatcattctctaaacaaactactcttttaattttttta-aaagatttcttcattttccctcatattttccac 666491  T
Q  116 ccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    ||||||||| ||| |||||  |  |||| ||||||| ||||||||| ||||    
T  666492 ccctcaaagtctttccttcatcttcccttcaaactcgcaaacaaagtctaa 666542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 17760449 - 17760301
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||| ||||||| ||||| |||||||| || ||||    
T  17760449 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaa-attttttgaaaaatttctctatttttcctcatatgttgcacc 17760351  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||||||| | || ||  |||||| |||||| |||| |||||||||    
T  17760350 cctcaaagcctttcatttccttcccctctaaactcccaaataaagcctaa 17760301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 38795312 - 38795233
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaag 161  Q
    ||||||||||| |||||||||||||||||||||||  ||||||| ||| ||||||| || |||||||||| |||||||||    
T  38795312 gaaagatttcttcattttccctcatattttccacctttcaaagctttcacttcccctccgctccaaactcgcaaacaaag 38795233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 50226147 - 50226290
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| ||| || | |||||||||||||||||||| | | |||| |        ||||| |||||||||||||  | ||||||||||||    
T  50226147 aaaaatatagtaatcatatgaataaatttatcattctctaaaaaactattttttttaaattttttgaaagttttctccattttctgttatattttccacc 50226246  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaa 160  Q
    ||||||| ||||||||||||| || |||||||||  ||||||||    
T  50226247 cctcaaaaccttcccttcccctcctctccaaacttgcaaacaaa 50226290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 4204679 - 4204597
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    ||||||||||||||||||||||| || |||||||| ||||||||||||| |||    ||||||||||||| ||||||||||||    
T  4204679 gaaagatttctccattttccctcgtaatttccacctctcaaagccttccattctattcccctccaaactcccaaacaaagcct 4204597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 46001683 - 46001825
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||         ||||||||||| ||||| | ||||||||| ||||    
T  46001683 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaaatttttta-aaagatttctctatttttcttcatattttgcacc 46001781  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaa 160  Q
    ||||||| |||| |||| ||   ||||||||||||  |||||||    
T  46001782 cctcaaaacctttcctttcctttccctccaaactcctaaacaaa 46001825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 37875652 - 37875572
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagc 162  Q
    ||||||||| ||||||||| |||||||||| ||||||||||| | || || ||||| || |||||||||| ||||||||||    
T  37875652 gaaagatttttccattttctctcatatttttcacccctcaaaacatttccctcccctcctctccaaactcgcaaacaaagc 37875572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 5584622 - 5584737
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||| ||||||||||||||| | ||||||||        | |||||||||| ||||| | ||||||||| ||||    
T  5584622 aaaaataaagtaatcatatgcattaatttaccattctctaaaaaactactcttttaa-aaaatttgtaagatttctctatttttcttcatattttgcacc 5584720  T
Q  117 cctcaaagccttccctt 133  Q
    |||||||||||| ||||    
T  5584721 cctcaaagcctttcctt 5584737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 41817263 - 41817148
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        ||||||| |||| ||||| ||| ||||||| ||||    
T  41817263 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaa-attttttgaaagatctctctatttttccttatattttacacc 41817165  T
Q  117 cctcaaagccttccctt 133  Q
    ||||||| |||| ||||    
T  41817164 cctcaaaacctttcctt 41817148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 33324812 - 33324857
Alignment:
Q  89 ttctccattttccctcatattttccacccctcaaagccttcccttc 134  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||    
T  33324812 ttctccattttccctcatatttcccacccctcaaagtcttcccttc 33324857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 43036222 - 43036141
Alignment:
Q  83 aaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||| || |||||||||  |||||  |||||| ||||||| | |||||||| ||||||||||||| ||||||||||||    
T  43036222 aaagatttttcaattttcccttctatttctcaccccacaaagcccttccttcccctcccctccaaactcccaaacaaagcct 43036141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 50587216 - 50587295
Alignment:
Q  84 aagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||||||||||||   ||||| |||||| ||||||||  ||||||||| ||| ||||||||| ||||||||||||    
T  50587216 aagatttctccattttcccctctatttcccacccttcaaagccc-cccttcccctcccttccaaactcccaaacaaagcct 50587295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 49102875 - 49102793
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||||| ||||| ||  ||||||  | |||| ||||||| | |||||||| ||||||||||||| ||||||||||||    
T  49102875 gaaagatttctcaatttttccctatatttctctccccccaaagcccttccttcccctcccctccaaactcccaaacaaagcct 49102793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 27255316 - 27255372
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaa 73  Q
    ||||||| || ||||| |||||||| |||||||||||||||||||| | ||||||||    
T  27255316 aaaaataaagcaatcatatgcattaatttatcattctctaaaaaactactcttttaa 27255372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 47742775 - 47742811
Alignment:
Q  131 cttccccacccctccaaactcacaaacaaagcctaaa 167  Q
    ||||||||||||||||||||| |||||||||||||||    
T  47742775 cttccccacccctccaaactcccaaacaaagcctaaa 47742811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 51303029 - 51302993
Alignment:
Q  128 tcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||||||||||||||||| ||||||||||||    
T  51303029 tcccttccccacccctccaaactcccaaacaaagcct 51302993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 7915741 - 7915827
Alignment:
Q  82 gaaagatttctc-cattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaaa 168  Q
    ||||||||||||  ||||||||| |||||| | ||||| ||||||| |||| ||||| ||| |||||||||  |||||||||||||||    
T  7915741 gaaagatttctcaaattttccct-atatttcctaccccccaaagccctcccctcccctcccgtccaaactccaaaacaaagcctaaaa 7915827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 29092264 - 29092310
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagcctt 128  Q
    |||||||||||| ||||| ||||||||||| ||||||||||| ||||    
T  29092264 gaaagatttctctatttttcctcatattttgcacccctcaaaacctt 29092310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 33991746 - 33991807
Alignment:
Q  105 atattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||| | ||||| ||||||| |||| ||||  ||||||||||||| ||||||||||||||    
T  33991746 atatttccaaccccccaaagccctcccctcccttcccctccaaactcccaaacaaagcctaa 33991807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 36886784 - 36886739
Alignment:
Q  122 aagccttcccttccccacccctccaaactcacaaacaaagcctaaa 167  Q
    |||||||||| ||||  ||||||||||||| |||||||||||||||    
T  36886784 aagccttcccctcccttcccctccaaactcgcaaacaaagcctaaa 36886739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 40136435 - 40136480
Alignment:
Q  121 aaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    ||||||||||||| ||  ||||||||||||| ||||||||||||||    
T  40136435 aaagccttccctttccttcccctccaaactcgcaaacaaagcctaa 40136480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 43571846 - 43571785
Alignment:
Q  105 atattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||| | ||||| |||||||||||| ||||  || |||||||||| ||||||||||||||    
T  43571846 atatttccaaccccccaaagccttcccctcccttcctctccaaactcccaaacaaagcctaa 43571785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 52073330 - 52073249
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcc 163  Q
    |||||||||  | ||||||||  |||||| | ||||  || ||||||||||||||| |||| |||||||| |||||||||||    
T  52073330 gaaagattttacaattttcccctatatttccaaccctccagagccttcccttcccctccccaccaaactcccaaacaaagcc 52073249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 4204744 - 4204700
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaa 61  Q
    ||||||| |||||||| ||| |||| |||||||||||||||||||    
T  4204744 aaaaatatagtaatcatatgtattaatttatcattctctaaaaaa 4204700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 28848763 - 28848719
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaa 61  Q
    ||||||| |||||||| | |||||| |||||||||||||||||||    
T  28848763 aaaaatatagtaatcataggcattaatttatcattctctaaaaaa 28848719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 32287697 - 32287737
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaa 57  Q
    ||||||| |||||||| |||||||| |||||||||||||||    
T  32287697 aaaaatatagtaatcatatgcattaatttatcattctctaa 32287737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 39508995 - 39509031
Alignment:
Q  128 tcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  39508995 tcccttcccctcccctccaaactcccaaacaaagcct 39509031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 39886827 - 39886767
Alignment:
Q  89 ttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaac 149  Q
    |||| ||||||||||| |||||| || |||| |||| |||| ||||||| |||||||||||    
T  39886827 ttcttcattttccctcgtatttttcatcccttaaagtcttctcttcccctcccctccaaac 39886767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 7188 - 7334
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||||| | ||||||||        |||| ||||||||||||||||||||| ||||||||    
T  7188 aaaaataaagtaatcacatgcattaatttatcattttctaaaaaactactcttttaaaaaaatt-gaaaaatttctccattttccctcatactttccacc 7286  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    ||  ||||||||| |||| ||  |||||||||||||||||||| ||||    
T  7287 ccaaaaagccttctcttctccttccctccaaactcacaaacaatgcct 7334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 5884 - 5799
Alignment:
Q  83 aaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaaa 168  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |  |||||||||||| |||||||| |||||||    
T  5884 aaagatttctccattttccctcatattttccacccctcaaagtcttcccttcctcttccctccaaactcccaaacaaaacctaaaa 5799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 32719263 - 32719117
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||||||||||| |||||  |||||||||| ||||    
T  32719263 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaaatttttt-gaaagatttctctatttttactcatattttgcacc 32719165  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||||| |||| ||  |||||| |||||| ||||||||||||    
T  32719164 cctcaaagcctttcctttccttcccctctaaactcccaaacaaagcct 32719117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 34 - 162
Target Start/End: Complemental strand, 20820482 - 20820354
Alignment:
Q  34 atgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacccctcaaagccttccctt 133  Q
    |||||||| ||||| |||||||||||||| | ||||||||        ||||   ||||||||||||||||||||||||||||||||||| | || ||||    
T  20820482 atgcattaatttattattctctaaaaaactactcttttaaaaaaaattgaaatgattctccattttccctcatattttccacccctcaaatcttttcctt 20820383  T
Q  134 ccccacccctccaaactcacaaacaaagc 162  Q
    |||| |||||| |||| | ||||||||||    
T  20820382 cccctcccctctaaacccgcaaacaaagc 20820354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 12779630 - 12779778
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| | |||||| |||||||| |||||||||||||||||| | | |||||||         |||| ||||||||||||| ||||||||||| ||||    
T  12779630 aaaaataaaataatcatatgcattaatttatcattctctaaaaacctactctttta-gaaaatttgaaaaatttctccatttttcctcatattttgcacc 12779728  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||| ||| | || ||  ||||| ||||||| ||||||||||||||    
T  12779729 cctcaaagtctttcatttccttccccttcaaactcccaaacaaagcctaa 12779778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 28551805 - 28551723
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||||||| |||  |||||||||||||||||  ||||||  ||||||||||| ||||||||||||| ||||||||||||||    
T  28551805 gaaagatttctctatt--ccctcatattttccacctttcaaagttttcccttcccctcccctccaaactcccaaacaaagcctaa 28551723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 24849493 - 24849381
Alignment:
Q  38 attagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacccctcaaagccttcccttcccc 137  Q
    |||| ||||||||||| | |||||||| ||||||||        |||||||||||  ||||||||||||||||||||||||||||| |||| | ||||||    
T  24849493 attaatttatcattctttgaaaaaccactcttttaaaaaaaattgaaagatttcttaattttccctcatattttccacccctcaaaacctttcattcccc 24849394  T
Q  138 acccctccaaact 150  Q
     || |||||||||    
T  24849393 tcctctccaaact 24849381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 11180092 - 11179946
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| ||||||||| |||||||||| | ||||||||        |||  ||||||| ||||  ||||||||||| ||||    
T  11180092 aaaaataaagtaatcatatgcattaatttatcattatctaaaaaactactcttttaaaaatttt-gaagaatttctctatttatcctcatattttgcacc 11179994  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||| | |||| ||  ||| ||||||||| ||||||||||||    
T  11179993 cctcaaagcccttcctttccttcccttccaaactctcaaacaaagcct 11179946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 33590293 - 33590176
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||| ||||||||| |||  |||||||||| ||||    
T  33590293 aaaaatatagtaatcatatgcattaatttatcattctctaaaaaactactcttttaa-aaaaattgaaaaatttctccaatttttctcatattttgcacc 33590195  T
Q  117 cctcaaagccttcccttccc 136  Q
    ||||||| |||| |||||||    
T  33590194 cctcaaa-cctttccttccc 33590176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 6687912 - 6687856
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaa 73  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||    
T  6687912 aaaaatatagtaatcatatgcattaatttatcattctctaaaaaactactcttttaa 6687856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 128
Target Start/End: Original strand, 6855844 - 6855878
Alignment:
Q  94 cattttccctcatattttccacccctcaaagcctt 128  Q
    |||||||||||||||||||||||||||||||||||    
T  6855844 cattttccctcatattttccacccctcaaagcctt 6855878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 26289668 - 26289724
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaa 73  Q
    ||||||| |||||||| |||||||| |||||||||||||| ||||  ||||||||||    
T  26289668 aaaaatatagtaatcatatgcattaatttatcattctctacaaaaataatcttttaa 26289724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 1567398 - 1567443
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaac 62  Q
    ||||||| |||||||| |||||||| |||| |||||||||||||||    
T  1567398 aaaaataaagtaatcatatgcattaatttaccattctctaaaaaac 1567443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 29054684 - 29054740
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaa 73  Q
    ||||||| |||||||| ||  |||| |||||||||||||||||||| | ||||||||    
T  29054684 aaaaatatagtaatcatatatattaatttatcattctctaaaaaactattcttttaa 29054740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 26497 - 26644
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaa-tcttttaannnnnnnngaaagatttctccattttccctcatattttccac 115  Q
    ||||||| |||||||| ||| |||| ||||||||||||||||||| | | ||||||||        ||| |||||||| |||||  |||||||||| |||    
T  26497 aaaaataaagtaatcatatgtattaatttatcattctctaaaaaaactactcttttaaattttttggaa-gatttctctattttttctcatattttgcac 26595  T
Q  116 ccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    ||||||||||||| |||| ||  ||||||||||||| ||||||||||||    
T  26596 ccctcaaagcctttcctttccttcccctccaaactcccaaacaaagcct 26644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 37238 - 37377
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaa-tcttttaannnnnnnngaaagatttctccattttccctcatattttccac 115  Q
    ||||||| |||||||| |||||||| ||||||||||||||||||| | | ||||||||         ||||||||||| ||| |||||||||||||| ||    
T  37238 aaaaatatagtaatcatatgcattaatttatcattctctaaaaaaactactcttttaaaaaattta-aaagatttctcaattctccctcatattttctac 37336  T
Q  116 ccctcaaagccttcccttccccacccctccaaactcacaaa 156  Q
    ||||||||| ||| | ||| || ||||||||||||||||||    
T  37337 ccctcaaagtctttcattctcctcccctccaaactcacaaa 37377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 30570 - 30706
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaa-tcttttaannnnnnnngaaagatttctccattttccctcatattttccac 115  Q
    ||||||| |||||||| |||||||| ||||||||||||||||||| | | ||||||||         ||||||||||| ||| |||||||||||||| |     
T  30570 aaaaatatagtaatcatatgcattaatttatcattctctaaaaaaactactcttttaaaaaattta-aaagatttctcaattctccctcatattttctaa 30668  T
Q  116 ccctcaaagccttcccttccccacccctccaaactcac 153  Q
    ||||||||| ||| | ||| || |||||||||||||||    
T  30669 ccctcaaagtctttcattctcctcccctccaaactcac 30706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 160 - 12
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| | ||||||||        |||||||||||| ||||| |||||||| || ||||    
T  160 aaaaataaagtaatcatatgcattaatttatcattctctaaaaaactactcttttaa-attttttgaaagatttctctatttttcctcatatgttgcacc 62  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    | |||||||||| | || |   |||||| |||||| |||| |||||||||    
T  61 cttcaaagcctttcatttctttcccctctaaactcccaaataaagcctaa 12  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 93470 - 93362
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| ||||| |||||||||||||| | ||||||||        |||||||||||| ||||| ||||||||||| ||||    
T  93470 aaaaataaagtaatcatatgcattaatttattattctctaaaaaactactcttttaaatttttt-gaaagatttctctatttttcctcatattttgcacc 93372  T
Q  117 cctcaaagcc 126  Q
    ||||||||||    
T  93371 cctcaaagcc 93362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 968 - 1107
Alignment:
Q  25 agtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacccctcaaag 124  Q
    |||||| | |||||||| ||| ||||||||||||| |||| ||||||||        |||||||||||| |||||  ||||||||||  |||||||||||    
T  968 agtaattatatgcattaatttctcattctctaaaataccactcttttaaagttttttgaaagatttctctattttttctcatattttgaacccctcaaag 1067  T
Q  125 ccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||| ||||  |  |||||||||||||  |||||||||||    
T  1068 cctttccttttcttcccctccaaactcctaaacaaagcct 1107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 491 - 573
Alignment:
Q  86 gatttctccattttccctcatatttt-ccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaaa 167  Q
    ||||||| |||||||||||||||||| |||||| ||| | ||||||||||||| ||||||||||||  ||||||||| |||||    
T  491 gatttcttcattttccctcatatttttccacccttcacaaccttcccttcccctcccctccaaactttcaaacaaagtctaaa 573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 164
Target Start/End: Complemental strand, 638 - 509
Alignment:
Q  34 atgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacccctcaaagccttccctt 133  Q
    |||||||| ||| ||||||||||||| |||| ||||||||        |||||||||| | ||||| |||||||||||  ||||||||||||||| ||||    
T  638 atgcattaatttctcattctctaaaataccactcttttaaatttttt-gaaagatttccctatttttcctcatatttttaacccctcaaagcctttcctt 540  T
Q  134 ccccacccctccaaactcacaaacaaagcct 164  Q
      |  ||| ||||||||| ||||||||||||    
T  539 ttcttcccttccaaactcccaaacaaagcct 509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 3468 - 3386
Alignment:
Q  82 gaaagatttctccattttccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcct 164  Q
    |||||||||||| ||||| ||||||||||| ||||| |||||||||| | ||  |  ||| ||||||||| ||||||||||||    
T  3468 gaaagatttctctatttttcctcatattttgcacccatcaaagcctttcattttcttcccttccaaactcccaaacaaagcct 3386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 44941 - 44825
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| ||||||||  ||||||||||||||||||  | ||||||||         |||||||| | |||||||||| ||||||||||||    
T  44941 aaaaatatagtaatcatatgcattaaattatcattctctaaaaaattactcttttaaaaaattta-aaagattttttcattttccctaatattttccacc 44843  T
Q  117 cctcaaagccttcccttc 134  Q
    | |||||  |||||||||    
T  44842 cgtcaaaatcttcccttc 44825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 19375 - 19291
Alignment:
Q  82 gaaagatttctccatttt-ccctcatattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagccta 165  Q
    |||||||||||||||||| ||||  ||||| ||||||||||||||  || | ||||  |||||| |||||| |||||||||||||    
T  19375 gaaagatttctccatttttcccttttatttcccacccctcaaagctctctcctcccttcccctcaaaactcccaaacaaagccta 19291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 19571 - 19605
Alignment:
Q  134 ccccacccctccaaactcacaaacaaagcctaaaa 168  Q
    |||| ||||||||||||||||||||||||||||||    
T  19571 ccccgcccctccaaactcacaaacaaagcctaaaa 19605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 1987 - 1839
Alignment:
Q  17 aaaaatacagtaatcacatgcattagtttatcattctctaaaaaaccaatcttttaannnnnnnngaaagatttctccattttccctcatattttccacc 116  Q
    ||||||| |||||||| |||||||| |||| ||||||||||||||  | ||||||||        | |||||||||| ||| | | ||||||||| | ||    
T  1987 aaaaataaagtaatcatatgcattaatttaccattctctaaaaaattactcttttaa-aaaatttgtaagatttctctattattcttcatattttacgcc 1889  T
Q  117 cctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||||||||| |||| ||  ||||| |||| || |||| |||||||||    
T  1888 cctcaaagcctttcctttccttccccttcaaattcgcaaagaaagcctaa 1839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 1783 - 1844
Alignment:
Q  105 atattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||| | ||||| ||||||| |||| ||||  ||||||||||||| ||||||||||||||    
T  1783 atatttccaaccccccaaagccctcccctcccttcccctccaaactctcaaacaaagcctaa 1844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 35332 - 35271
Alignment:
Q  105 atattttccacccctcaaagccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    |||||| | ||||| ||||||| |||| ||||  ||||||||||||| ||||||||||||||    
T  35332 atatttccaaccccccaaagccctcccctcccttcccctccaaactcccaaacaaagcctaa 35271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 59711 - 59670
Alignment:
Q  125 ccttcccttccccacccctccaaactcacaaacaaagcctaa 166  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||    
T  59711 ccttcccctcccctcccctccaaactcccaaacaaagcctaa 59670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 1975 - 1931
Alignment:
Q  119 tcaaagccttcccttccccacccctccaaactcacaaacaaagcc 163  Q
    |||||| |||||||||||  ||||||||||||| |||||||||||    
T  1975 tcaaagtcttcccttcccttcccctccaaactcgcaaacaaagcc 1931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University