View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9484_low_4 (Length: 687)
Name: NF9484_low_4
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 15 - 536
Target Start/End: Original strand, 26859443 - 26859964
Alignment:
| Q |
15 |
atcaaatttgatatcagaaaatacaatcctacgaaaattaaacaaaaagtaacgattcaattgctctcaaattcatacgaaacgcagatctaagcaatta |
114 |
Q |
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| T |
26859443 |
atcaaatttgatatcagaaaatacaatcctacgaaaattaaacaaaaagtaacgattcaattgctctcaaattcatacgaaacgcagatctaagcaatta |
26859542 |
T |
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| Q |
115 |
cctcaacggtctaaaccgaatcgtcaccgaaatactatccctcggagtggaagaatccacctcctccaccggagaaccataactgtgcacatcgaaatag |
214 |
Q |
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| T |
26859543 |
cctcaacggtctaaaccgaatcgtcaccgaaatactatccctcggagtggaagaatccacctcctccaccggagaaccataactgtgcacatcgaaatag |
26859642 |
T |
|
| Q |
215 |
tttgactcgctttgagtacgactcggagtcaacatggatcggtcagcgccaccaccggagttgaaaaacgaagacgccgaagtagagcaggaacgcggca |
314 |
Q |
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| T |
26859643 |
tttgactcgctttgactacgactcggagtcaacatggatcggtcagcgccaccaccggagttgaaaaacgaagacgccgaagtagagcaggaacgcggca |
26859742 |
T |
|
| Q |
315 |
ttaactttccggcggtgaaggaagaagcggaagagtaaggagtggaaggtttccggtgagagaacggtgagttgctcggtgctcgtgaagacgaagccat |
414 |
Q |
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| T |
26859743 |
ttaactttccggcggtgaaggaagaagcggaagagtaaggagtggaaggtttccggtgagagaacggtgagttgctcggtgctcgtgaagacgaagccat |
26859842 |
T |
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| Q |
415 |
tgagtcaactcgccgagttagttagaagaaaatggtaaaatgtggagtgaaggaggaagaaaggttaaggaaaaggaatagaatgtgtcaggattttcac |
514 |
Q |
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| T |
26859843 |
tgagtcaactcgccgagttagttagaagaaaatggtaaaatgtggagtgaaggaggaagaaaggttaaggaagaggaatagaatgtgtcaggattttcac |
26859942 |
T |
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| Q |
515 |
atggaaacaaaagcgaagaaca |
536 |
Q |
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| T |
26859943 |
atggaaacaaaagtgaagaaca |
26859964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 569 - 687
Target Start/End: Original strand, 26859997 - 26860115
Alignment:
| Q |
569 |
ggatgctttgacgcttttgattcacgaggagagagtttcgtcttctcgaagacaagtagagttgcagagagaaagtggttgaattgaaggagaaaggtga |
668 |
Q |
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| T |
26859997 |
ggatgctttgacgcttttgattcacgaggagagagtttcgtcttctcgaagacaagtagagttgcagagagaaagtggttgaattgaaggagaaaggtga |
26860096 |
T |
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| Q |
669 |
aaaagagaagaaataatct |
687 |
Q |
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| T |
26860097 |
aaaagagaagaaataatct |
26860115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 417
Target Start/End: Original strand, 54895399 - 54895472
Alignment:
| Q |
344 |
gaagagtaaggagtggaaggtttccggtgagagaacggtgagttgctcggtgctcgtgaagacgaagccattga |
417 |
Q |
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| T |
54895399 |
gaagagtaaggtgttgatggtttccggtgagaaaacggtgagctacttcgtgctcgagaagaagacgccattga |
54895472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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