View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9484_low_42 (Length: 336)
Name: NF9484_low_42
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_42 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 189 - 336
Target Start/End: Original strand, 16358065 - 16358213
Alignment:
| Q |
189 |
gttagaagatgttggtgttgat---gaggatgtgctaaagaagttttcattagcatcattttccatgttttcctaagttagggggttatgattagattta |
285 |
Q |
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| T |
16358065 |
gttagaagatgttggtgttgatgatgaggatgtgctaaagaagttttcattagcatcattttccatgttttcctaagttagggggttatgattagattta |
16358164 |
T |
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| Q |
286 |
gagaggtgtatatagagaggaagaatgagtgtggaaggtgcataaaaatag |
336 |
Q |
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| T |
16358165 |
gagaggtg--tatagagaggaagaatgagtgtggaaggtgcataaaaatag |
16358213 |
T |
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Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 16357888 - 16357959
Alignment:
| Q |
18 |
ctttcttggctcacgaatttcagatacccattttccccatgctctcattcttacacctctatatgtagggtg |
89 |
Q |
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| T |
16357888 |
ctttcttggctcacgaatttcagatacccattttccccatgctctcattcttacacctctatatgtagggtg |
16357959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 33602345 - 33602299
Alignment:
| Q |
34 |
atttcagatacccattttccccatgctctcattcttacacctctata |
80 |
Q |
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| T |
33602345 |
atttcagaaacccattttccccatgttcgcattcttacacctctata |
33602299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 33589242 - 33589180
Alignment:
| Q |
18 |
ctttcttggctcacgaatttcagatacccattttccccatgctctcattcttacacctctata |
80 |
Q |
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| T |
33589242 |
ctttcgtggttcacggatttcggatacccattttccccatgttcgcattctaactcctctata |
33589180 |
T |
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