View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9484_low_43 (Length: 336)

Name: NF9484_low_43
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9484_low_43
NF9484_low_43
[»] chr6 (11 HSPs)
chr6 (16-336)||(176283-176603)
chr6 (237-336)||(1470926-1471025)
chr6 (220-336)||(7564737-7564853)
chr6 (237-336)||(1459544-1459643)
chr6 (231-334)||(370782-370885)
chr6 (222-324)||(1442096-1442198)
chr6 (71-181)||(1453677-1453787)
chr6 (71-181)||(1465369-1465479)
chr6 (108-181)||(1459403-1459476)
chr6 (237-286)||(9819832-9819881)
chr6 (237-285)||(9703889-9703937)
[»] chr4 (1 HSPs)
chr4 (224-325)||(55419742-55419843)
[»] chr7 (1 HSPs)
chr7 (232-336)||(3927008-3927112)
[»] chr3 (3 HSPs)
chr3 (226-274)||(2442050-2442098)
chr3 (224-281)||(4142124-4142181)
chr3 (229-281)||(4157939-4157991)
[»] chr2 (3 HSPs)
chr2 (231-274)||(6538845-6538888)
chr2 (232-281)||(7160752-7160801)
chr2 (232-281)||(7168688-7168737)
[»] scaffold0044 (1 HSPs)
scaffold0044 (237-291)||(89137-89191)
[»] chr5 (2 HSPs)
chr5 (229-274)||(23766857-23766902)
chr5 (229-274)||(23816705-23816750)


Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 336
Target Start/End: Complemental strand, 176603 - 176283
Alignment:
Q  16 gacatcacagttgaaggaactctcaagatagatatttgagttgaaggaaatacatgggaggccttgaatcttgggattctttactgcaccagtcttgtaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  176603 gacatcacagttgaaggaactctcaagatagatatttgagttgaaggaaatacatgggaggccttgaatcttgggattctttactgcaccagtcttgtaa 176504  T
Q  116 ttgtaaacatataccttattgttgaagtccacgaacacttggtggtcctcctcagaaatataaagccgagtaatgcagacgccatcaagaccaacgaatt 215  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  176503 ttgtaaacatataccttattgatgaagtacacgaacacttggtggtcctcctcagaaatataaagccgagtaatgcagacgccatcaagaccaacgaatt 176404  T
Q  216 cggcgaatggaagagtgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgca 315  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  176403 cggcaaatggaagagtgaacaatttagtccaagaatctttatttccataatcattcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgca 176304  T
Q  316 taggcaatccctagaaacccc 336  Q
    |||||||||||||||||||||    
T  176303 taggcaatccctagaaacccc 176283  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 237 - 336
Target Start/End: Original strand, 1470926 - 1471025
Alignment:
Q  237 atttagtccaagaatctttatttccataatcgttcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggcaatccctagaaacccc 336  Q
    |||||| |||||||||||||||||||||||| ||||||  ||||||||||||||||| || ||| |||||||||| ||||| | ||||||||||||||||    
T  1470926 atttagaccaagaatctttatttccataatctttcataacccaaatatccaaaaaagatttggtatgagcaaggatgcataagtaatccctagaaacccc 1471025  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 220 - 336
Target Start/End: Original strand, 7564737 - 7564853
Alignment:
Q  220 gaatggaagagtgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcatagg 319  Q
    |||||||| | ||||| |||||||||||||||| || ||||||||||| ||||||  |||||||| ||||||||||   |||||||||||||| |||| |    
T  7564737 gaatggaacactgaacaatttagtccaagaatccttgtttccataatccttcataacccaaatattcaaaaaagttgtagtgtgagcaaggacccataag 7564836  T
Q  320 caatccctagaaacccc 336  Q
    ||||||||| |||||||    
T  7564837 caatccctacaaacccc 7564853  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 237 - 336
Target Start/End: Original strand, 1459544 - 1459643
Alignment:
Q  237 atttagtccaagaatctttatttccataatcgttcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggcaatccctagaaacccc 336  Q
    ||||||||||||| |||||||||||| |||| ||||||  ||||||||||||||||| ||  || |||||||||||||||| | |||||||| |||||||    
T  1459544 atttagtccaagattctttatttccaaaatctttcataacccaaatatccaaaaaagattttgtatgagcaaggacgcataagtaatccctataaacccc 1459643  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 334
Target Start/End: Original strand, 370782 - 370885
Alignment:
Q  231 tgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggcaatccctaga 330  Q
    ||||| ||||||||||||||||||||||||||||||  ||||||  |||||   ||| ||||||||  || |||||||||| ||||| ||||||||||||    
T  370782 tgaacaatttagtccaagaatctttatttccataattcttcataacccaaacgcccataaaagttttagtctgagcaaggatgcataagcaatccctaga 370881  T
Q  331 aacc 334  Q
    ||||    
T  370882 aacc 370885  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 222 - 324
Target Start/End: Original strand, 1442096 - 1442198
Alignment:
Q  222 atggaagagtgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggca 321  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||| ||||||  |||  ||||||||| |||| || | |||||||||| ||||| |||    
T  1442096 atggaacagtgaacaatttagtccaagaatctttaattccataatccttcataacccatgtatccaaaatagttccgttttgagcaaggatgcataagca 1442195  T
Q  322 atc 324  Q
    |||    
T  1442196 atc 1442198  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 1453677 - 1453787
Alignment:
Q  71 gggaggccttgaatcttgggattctttactgcaccagtcttgtaattgtaaacatataccttattgttgaagtccacgaacacttggtggtcctcctcag 170  Q
    ||||||||||||||||| ||| ||||||  | || | |||||||||||||||||||||||| ||  || ||||| | ||||||||||   |||||||| |    
T  1453677 gggaggccttgaatcttaggaatctttagggtacgattcttgtaattgtaaacatatacctcataatttaagtcgaagaacacttggccatcctcctcgg 1453776  T
Q  171 aaatataaagc 181  Q
    |||||||||||    
T  1453777 aaatataaagc 1453787  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 1465369 - 1465479
Alignment:
Q  71 gggaggccttgaatcttgggattctttactgcaccagtcttgtaattgtaaacatataccttattgttgaagtccacgaacacttggtggtcctcctcag 170  Q
    ||||||||||||||||| ||| ||||||  | || | |||||||||||||||||||||||| ||  || ||||| | ||||||||||   |||||||| |    
T  1465369 gggaggccttgaatcttaggaatctttagggtacgattcttgtaattgtaaacatatacctcataatttaagtcgaagaacacttggccatcctcctcgg 1465468  T
Q  171 aaatataaagc 181  Q
    |||||||||||    
T  1465469 aaatataaagc 1465479  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 1459403 - 1459476
Alignment:
Q  108 tcttgtaattgtaaacatataccttattgttgaagtccacgaacacttggtggtcctcctcagaaatataaagc 181  Q
    ||||||||||||||||||||| |||||| | ||| || | || ||||||||  || ||||||||||||||||||    
T  1459403 tcttgtaattgtaaacatatatcttattatagaaatctaggaccacttggtcatcttcctcagaaatataaagc 1459476  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 9819832 - 9819881
Alignment:
Q  237 atttagtccaagaatctttatttccataatcgttcatacgccaaatatcc 286  Q
    ||||||||||||| ||| |||||||||| || |||||| |||||||||||    
T  9819832 atttagtccaagagtctctatttccatattccttcataagccaaatatcc 9819881  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 9703889 - 9703937
Alignment:
Q  237 atttagtccaagaatctttatttccataatcgttcatacgccaaatatc 285  Q
    ||||||||||| ||||| |||||||||| || |||||| ||||||||||    
T  9703889 atttagtccaaaaatctctatttccatattccttcataagccaaatatc 9703937  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 55419843 - 55419742
Alignment:
Q  224 ggaagagtgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggcaat 323  Q
    |||| ||| ||| ||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||  | ||||||||||| |||||||| |||||    
T  55419843 ggaatagtaaacaatttagtccaagaatctttatttccataaaccttcataagccagatatccaaaaaagaattggtgtgagcaacgacgcataagcaat 55419744  T
Q  324 cc 325  Q
    ||    
T  55419743 cc 55419742  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 336
Target Start/End: Complemental strand, 3927112 - 3927008
Alignment:
Q  232 gaacgatttagtccaagaatctttatttccataatcgttcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggcaatccctagaa 331  Q
    |||| ||||||||||||||| ||||||||||||||| ||||||  ||||||| |||| |||||||| |||| | ||||||| || | ||||||| |||||    
T  3927112 gaacaatttagtccaagaatttttatttccataatccttcataacccaaatacccaacaaagtttcagtgtaaacaaggacacacaagcaatccttagaa 3927013  T
Q  332 acccc 336  Q
    |||||    
T  3927012 acccc 3927008  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 2442098 - 2442050
Alignment:
Q  226 aagagtgaacgatttagtccaagaatctttatttccataatcgttcata 274  Q
    |||||||||| |||||||||||||||||||||||||||| || ||||||    
T  2442098 aagagtgaacaatttagtccaagaatctttatttccatactccttcata 2442050  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 4142124 - 4142181
Alignment:
Q  224 ggaagagtgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaa 281  Q
    |||| ||||||| ||||||||||||| |||||||||||||| || |||||| ||||||    
T  4142124 ggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaa 4142181  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 4157939 - 4157991
Alignment:
Q  229 agtgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaa 281  Q
    ||||||| ||||||||||||| |||||||||||||| || |||||| ||||||    
T  4157939 agtgaacaatttagtccaagactctttatttccatattccttcataagccaaa 4157991  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 6538888 - 6538845
Alignment:
Q  231 tgaacgatttagtccaagaatctttatttccataatcgttcata 274  Q
    ||||| |||||||||||||||||||||||||||| || ||||||    
T  6538888 tgaacaatttagtccaagaatctttatttccatactccttcata 6538845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 7160752 - 7160801
Alignment:
Q  232 gaacgatttagtccaagaatctttatttccataatcgttcatacgccaaa 281  Q
    |||| |||||||||||||||| ||||||||||| || |||||| ||||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaa 7160801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 7168688 - 7168737
Alignment:
Q  232 gaacgatttagtccaagaatctttatttccataatcgttcatacgccaaa 281  Q
    |||| |||||||||||||||| ||||||||||| || |||||| ||||||    
T  7168688 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 7168737  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 89191 - 89137
Alignment:
Q  237 atttagtccaagaatctttatttccataatcgttcatacgccaaatatccaaaaa 291  Q
    ||||||||||||| |||||||||||||| || ||||||  ||||||||| |||||    
T  89191 atttagtccaagactctttatttccatattccttcataacccaaatatcaaaaaa 89137  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 23766857 - 23766902
Alignment:
Q  229 agtgaacgatttagtccaagaatctttatttccataatcgttcata 274  Q
    ||||||| ||||||||||||| |||||||||||||| || ||||||    
T  23766857 agtgaacaatttagtccaagactctttatttccatattctttcata 23766902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 23816705 - 23816750
Alignment:
Q  229 agtgaacgatttagtccaagaatctttatttccataatcgttcata 274  Q
    ||||||| ||||||||||||| |||||||||||||| || ||||||    
T  23816705 agtgaacaatttagtccaagactctttatttccatattctttcata 23816750  T

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