View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9484_low_44 (Length: 317)

Name: NF9484_low_44
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9484_low_44
NF9484_low_44
[»] scaffold0018 (1 HSPs)
scaffold0018 (6-302)||(70088-70384)
[»] chr8 (1 HSPs)
chr8 (116-172)||(2577996-2578052)
[»] chr2 (2 HSPs)
chr2 (120-172)||(19525358-19525410)
chr2 (250-294)||(10582344-10582388)
[»] chr6 (1 HSPs)
chr6 (125-172)||(5964272-5964319)
[»] chr1 (1 HSPs)
chr1 (124-163)||(49519832-49519871)
[»] chr4 (3 HSPs)
chr4 (121-155)||(7048653-7048687)
chr4 (122-172)||(47442291-47442341)
chr4 (28-69)||(51117665-51117706)
[»] chr5 (2 HSPs)
chr5 (123-172)||(39646458-39646507)
chr5 (116-172)||(37326275-37326331)


Alignment Details
Target: scaffold0018 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 6 - 302
Target Start/End: Original strand, 70088 - 70384
Alignment:
Q  6 ttgtttgattaatgtagatgtcttcaaatcatgaatcagaagacctactttccgaattgtgaattaaatcttgttatgatttataagatgcattaccaat 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  70088 ttgtttgattaatgtagatgtcttcaaatcatgaatcagaagacctactttccgaattgtgaattaaatcttgttatgatttgtaagatgcattaccaat 70187  T
Q  106 acatatattggctactatatcatctactaatctcaaaataattcaagattcaaatcataaataaaatttccaagagaagtgcatggttagcatgaatctg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  70188 acatatattggctactatatcatctactaatctcaaaataattcaagattcaaatcataaataaaatttccaagagaagtgcatggttagcatgaatctg 70287  T
Q  206 gattgatcatagtgaatcaagattcattatcgcgtataggaacccaagatgaaattcatgttcaagatagacacacactagatattcatgttgatat 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  70288 gattgatcatagtgaatcaagattcattatcgcgtataggaacccaagatgaaattcatgttcaagatagacacacactagatattcatgtcgatat 70384  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 2578052 - 2577996
Alignment:
Q  116 gctactatatcatctactaatctcaaaataattcaagattcaaatcataaataaaat 172  Q
    |||| |||||||||||||| ||||||||||||| |||||| || |||||||| ||||    
T  2578052 gctaatatatcatctactagtctcaaaataattgaagattaaagtcataaatcaaat 2577996  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 19525358 - 19525410
Alignment:
Q  120 ctatatcatctactaatctcaaaataattcaagattcaaatcataaataaaat 172  Q
    |||||| ||| |||||||||||||||||||||||||| | |||||||| ||||    
T  19525358 ctatataatcaactaatctcaaaataattcaagattcgagtcataaatcaaat 19525410  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 10582344 - 10582388
Alignment:
Q  250 caagatgaaattcatgttcaagatagacacacactagatattcat 294  Q
    |||||||| |||||||||||| ||||| |||||||||| ||||||    
T  10582344 caagatgagattcatgttcaaaatagatacacactagagattcat 10582388  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 5964272 - 5964319
Alignment:
Q  125 tcatctactaatctcaaaataattcaagattcaaatcataaataaaat 172  Q
    |||||||||||||||||||||||  ||||||||| |||||||| ||||    
T  5964272 tcatctactaatctcaaaataatgtaagattcaactcataaatcaaat 5964319  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 49519832 - 49519871
Alignment:
Q  124 atcatctactaatctcaaaataattcaagattcaaatcat 163  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  49519832 atcatctactaatctcaaaatatttcaacattcaaatcat 49519871  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 7048687 - 7048653
Alignment:
Q  121 tatatcatctactaatctcaaaataattcaagatt 155  Q
    ||||||||||||||| |||||||||||||||||||    
T  7048687 tatatcatctactaacctcaaaataattcaagatt 7048653  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 47442291 - 47442341
Alignment:
Q  122 atatcatctactaatctcaaaataattcaagattcaaatcataaataaaat 172  Q
    ||||||||||| || |||||||||||||||||||||| | |||||| ||||    
T  47442291 atatcatctacaaagctcaaaataattcaagattcaagtaataaatcaaat 47442341  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 51117665 - 51117706
Alignment:
Q  28 ttcaaatcatgaatcagaagacctactttccgaattgtgaat 69  Q
    |||||||| ||||||| |||||||||||||||||| ||||||    
T  51117665 ttcaaatcgtgaatcaaaagacctactttccgaatcgtgaat 51117706  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 39646507 - 39646458
Alignment:
Q  123 tatcatctactaatctcaaaataattcaagattcaaatcataaataaaat 172  Q
    |||||||||||||||||||||| |||||||||| || || ||||| ||||    
T  39646507 tatcatctactaatctcaaaatgattcaagattgaagtcttaaatcaaat 39646458  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 37326331 - 37326275
Alignment:
Q  116 gctactatatcatctactaatctcaaaataattcaagattcaaatcataaataaaat 172  Q
    |||| |||||||| ||| ||  ||||||| |||||||||||||||||||||| ||||    
T  37326331 gctaatatatcatatacgaacatcaaaatgattcaagattcaaatcataaatcaaat 37326275  T

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