View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9484_low_45 (Length: 307)

Name: NF9484_low_45
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9484_low_45
NF9484_low_45
[»] chr7 (2 HSPs)
chr7 (17-278)||(17192114-17192376)
chr7 (179-278)||(17186560-17186660)
[»] chr3 (8 HSPs)
chr3 (46-261)||(11391560-11391794)
chr3 (137-278)||(11367004-11367146)
chr3 (137-278)||(11375712-11375854)
chr3 (165-278)||(11385512-11385626)
chr3 (179-278)||(11362716-11362816)
chr3 (46-119)||(11366897-11366969)
chr3 (46-119)||(11375605-11375677)
chr3 (46-115)||(11385443-11385511)
[»] scaffold1173 (2 HSPs)
scaffold1173 (137-278)||(2331-2473)
scaffold1173 (46-119)||(2224-2296)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 17192376 - 17192114
Alignment:
Q  17 actatgtaataaagactaccatccccttattccttgaattttatttttactttctcatgatctagaattagattttgtttttc-ttccttccaaagcatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17192376 actatgtaataaagactaccatccccttattccttgaattttatttttactttctcatgatctagaattagattttgtttttccttccttccaaagcatg 17192277  T
Q  116 caaagacatcgcaagaaattgatttcttatcacaagaaacatcagaaatatattaataagattaaatatatgtactgcttgaaacatgtaagacaagtag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17192276 caaagacatcgcaagaaattgatttcttatcacaagaaacatcagaaatatattaataagattaaatatatgtactgcttgaaacatgtaagacaagtag 17192177  T
Q  216 tgattcaatttgttactaatgaccgacttggtcactacatcagctatattttctgaagtatga 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17192176 tgattcaatttgttactaatgaccgacttggtcactacatcagctatattttctgaagtatga 17192114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 278
Target Start/End: Complemental strand, 17186660 - 17186560
Alignment:
Q  179 aaatatatgtactgcttgaaacatgtaagac-aagtagtgattcaatttgttactaatgaccgacttggtcactacatcagctatattttctgaagtatg 277  Q
    ||||||||||| || |||||||||||||| | |||  ||| |||||||||||||||||||   ||||||||| ||||||| ||||||||||| |||||||    
T  17186660 aaatatatgtagtgtttgaaacatgtaagtccaagcggtgcttcaatttgttactaatgagtaacttggtcaatacatcaactatattttctaaagtatg 17186561  T
Q  278 a 278  Q
    |    
T  17186560 a 17186560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 46 - 261
Target Start/End: Original strand, 11391560 - 11391794
Alignment:
Q  46 ttccttgaattttatttttactttctcatgatctagaattagattttgtttttcttccttccaaagcatgcaaagacatcgcaagaaattg--------- 136  Q
    |||||||||||||||||||||||| | ||||||||||| |||||||| |||||||||||| ||||||||||||| ||||| ||||||||||             
T  11391560 ttccttgaattttatttttacttttttatgatctagaactagattttctttttcttcctttcaaagcatgcaaaaacatcacaagaaattgatctcacca 11391659  T
Q  137 ------atttcttatcacaagaaacat---cagaaatatattaataagattaaatatatgtactgcttgaaacatgtaag-acaagtagtgattcaattt 226  Q
          |||||| ||||||||||||||    | ||||||||||||||||| |||||||| || ||||||||||||| |||  |||| |||| ||||||||    
T  11391660 tcaactatttctaatcacaagaaacataaaaaaaaatatattaataagataaaatatatatagtgcttgaaacatgcaagttcaagcagtgcttcaattt 11391759  T
Q  227 gttactaatgaccgacttggtcactacatcagcta 261  Q
    |||| |||||||  ||||||||| |||||||||||    
T  11391760 gttagtaatgactaacttggtcaatacatcagcta 11391794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 137 - 278
Target Start/End: Original strand, 11367004 - 11367146
Alignment:
Q  137 atttcttatcacaagaaacatcagaaatatattaataagattaaatatatgtactgcttgaaacatgtaag-acaagtagtgattcaatttgttactaat 235  Q
    ||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||  ||||  ||| |||||||||||||||||    
T  11367004 atttcttattacaagaaacatcataaatatattaataagataaaatatatgtagtgtttgaaacatgtaagtccaagcggtgcttcaatttgttactaat 11367103  T
Q  236 gaccgacttggtcactacatcagctatattttctgaagtatga 278  Q
    ||   ||||||||| ||||||| ||||||||||| ||||||||    
T  11367104 gagtaacttggtcaatacatcaactatattttctaaagtatga 11367146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 137 - 278
Target Start/End: Original strand, 11375712 - 11375854
Alignment:
Q  137 atttcttatcacaagaaacatcagaaatatattaataagattaaatatatgtactgcttgaaacatgtaag-acaagtagtgattcaatttgttactaat 235  Q
    ||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||  ||||  ||| |||||||||||||||||    
T  11375712 atttcttattacaagaaacatcataaatatattaataagataaaatatatgtagtgtttgaaacatgtaagtccaagcggtgcttcaatttgttactaat 11375811  T
Q  236 gaccgacttggtcactacatcagctatattttctgaagtatga 278  Q
    ||   ||||||||| ||||||| ||||||||||| ||||||||    
T  11375812 gagtaacttggtcaatacatcaactatattttctaaagtatga 11375854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 11385512 - 11385626
Alignment:
Q  165 atattaataagattaaatatatgtactgcttgaaacatgtaag-acaagtagtgattcaatttgttactaatgaccgacttggtcactacatcagctata 263  Q
    ||||||||||||| ||||||||||| || ||||||||||||||  ||||  ||| |||||||| ||||||||||   | ||||||| ||||||| |||||    
T  11385512 atattaataagataaaatatatgtagtgtttgaaacatgtaagtccaagcggtgcttcaattttttactaatgagtaatttggtcaatacatcaactata 11385611  T
Q  264 ttttctgaagtatga 278  Q
    |||||| ||||||||    
T  11385612 ttttctaaagtatga 11385626  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 11362716 - 11362816
Alignment:
Q  179 aaatatatgtactgcttgaaacatgtaagac-aagtagtgattcaatttgttactaatgaccgacttggtcactacatcagctatattttctgaagtatg 277  Q
    ||||||||||| || |||||||||||||| | |||  ||| |||||||||||||||||||   | ||||||| ||||||| ||||||||||| |||||||    
T  11362716 aaatatatgtagtgtttgaaacatgtaagtccaagcggtgcttcaatttgttactaatgagtaagttggtcaatacatcaactatattttctaaagtatg 11362815  T
Q  278 a 278  Q
    |    
T  11362816 a 11362816  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 11366897 - 11366969
Alignment:
Q  46 ttccttgaattttatttttactttctcatgatctagaattagattttgtttttcttccttccaaagcatgcaaa 119  Q
    |||||||||||||||||||||||| | |||| |||||||| |||| || || ||||||||||||| ||||||||    
T  11366897 ttccttgaattttatttttactttat-atgacctagaattggattatgcttgtcttccttccaaatcatgcaaa 11366969  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 11375605 - 11375677
Alignment:
Q  46 ttccttgaattttatttttactttctcatgatctagaattagattttgtttttcttccttccaaagcatgcaaa 119  Q
    |||||||||||||||||||||||| | |||| |||||||| |||| || || ||||||||||||| ||||||||    
T  11375605 ttccttgaattttatttttactttat-atgacctagaattggattatgcttgtcttccttccaaatcatgcaaa 11375677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 11385443 - 11385511
Alignment:
Q  46 ttccttgaattttatttttactttctcatgatctagaattagattttgtttttcttccttccaaagcatg 115  Q
    ||||||||||||||||| |||||| | |||| |||||||| |||| || || ||||||||||||| ||||    
T  11385443 ttccttgaattttatttctactttat-atgacctagaattggattatgcttgtcttccttccaaatcatg 11385511  T

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Target: scaffold1173 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 137 - 278
Target Start/End: Original strand, 2331 - 2473
Alignment:
Q  137 atttcttatcacaagaaacatcagaaatatattaataagattaaatatatgtactgcttgaaacatgtaag-acaagtagtgattcaatttgttactaat 235  Q
    ||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||  ||||  ||| |||||||||||||||||    
T  2331 atttcttattacaagaaacatcataaatatattaataagataaaatatatgtagtgtttgaaacatgtaagtccaagcggtgcttcaatttgttactaat 2430  T
Q  236 gaccgacttggtcactacatcagctatattttctgaagtatga 278  Q
    ||   | ||||||| ||||||| ||||||||||| ||||||||    
T  2431 gagtaagttggtcaatacatcaactatattttctaaagtatga 2473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 2224 - 2296
Alignment:
Q  46 ttccttgaattttatttttactttctcatgatctagaattagattttgtttttcttccttccaaagcatgcaaa 119  Q
    |||||||||||||||||||||||| | |||| |||||||| |||| || || ||||||||||||| ||||||||    
T  2224 ttccttgaattttatttttactttat-atgacctagaattggattatgcttgtcttccttccaaatcatgcaaa 2296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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