View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9484_low_47 (Length: 305)
Name: NF9484_low_47
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 50 - 289
Target Start/End: Complemental strand, 34821446 - 34821207
Alignment:
| Q |
50 |
ctcattgtttcatgagatcatttttcaagggttcccaattgtttatagatgggcttctgtaagtacacttcatgcatgtacatttatttttcaatttgtt |
149 |
Q |
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| T |
34821446 |
ctcattgtttcatgagatcatttttcaagggttcccaattgtttatagatgggcttctgtaagtacacttcatgcatgtacatttatttttcaatttgtt |
34821347 |
T |
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| Q |
150 |
aatatcaatatggtttcaattgaccatgtattgatggatccaaaaagctagattaatatcacaaagtccatgattgttgataattatgaaatcaaataag |
249 |
Q |
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| T |
34821346 |
aatatcaatatggtttcaattgaccatgtattgatggatccaaaaagctagattaatatcacaaagtccatgattgttgataattatgaaatcaaataag |
34821247 |
T |
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| Q |
250 |
tattgtctctagttatgagttaatccattacgtacctaac |
289 |
Q |
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| T |
34821246 |
tattgtctctagttatgagttaatccattacgtacctaac |
34821207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 172
Target Start/End: Complemental strand, 34835688 - 34835565
Alignment:
| Q |
50 |
ctcattgtttcatgagatcatttttcaagggttcccaattgtttatagatgggcttctgtaagtacacttcatgcatgtaca--tttatttttcaatttg |
147 |
Q |
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| T |
34835688 |
ctcattgtttcatgaaatctttcttcaaggtttcccaattgtttatagatgggcttctgtaagtacatttcatgc-tttacactttttttcttcaattta |
34835590 |
T |
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| Q |
148 |
ttaatatcaatatggtttcaattga |
172 |
Q |
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| T |
34835589 |
ttaagatcaagatgatttcaattga |
34835565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 34826616 - 34826567
Alignment:
| Q |
9 |
agcagagatggaggtcatttgggtgatggttgtgcatcaggctcattgtt |
58 |
Q |
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| T |
34826616 |
agcaaagatggaggtcatttgggtgatggttgtgcatcaggctcattgtt |
34826567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 35335468 - 35335533
Alignment:
| Q |
51 |
tcattgtttcatgagatcatttttcaagggttcccaattgtttatagatgggcttctgtaagtaca |
116 |
Q |
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| T |
35335468 |
tcattgtttcaggagatattttcacaaggcttcccaattgtttatagatgggctcctgtaagtaca |
35335533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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