View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9484_low_48 (Length: 296)
Name: NF9484_low_48
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 7107922 - 7107840
Alignment:
| Q |
3 |
catagacaggtggaacagctgcttaggcttaaccagtaacatgaacttcatagtttctcatatctgtagggaatgaaattgtt |
85 |
Q |
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| T |
7107922 |
cataaacaggtggaacaactgcttaggcttaaccagtaacatgaacttcatagtttctcatatctgtagggaatgaaattgtt |
7107840 |
T |
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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 280
Target Start/End: Complemental strand, 7107630 - 7107443
Alignment:
| Q |
110 |
tattaatttatacattaactcttttgtttgaatgcattacatattcctcctcagactagtgcagatttctttaataagaggct----------------- |
192 |
Q |
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| T |
7107630 |
tattaatttatccattaactcttttatctgaatgcatgacat--tcctcctcagactagtgcaaatttctttaataagaggcttgatttaccatgtttta |
7107533 |
T |
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| Q |
193 |
--tttgtaaatggttcaaacgttttggcttactccccctttccnnnnnnnatatctatttttggtttacatgtctgatgctctttgcatc |
280 |
Q |
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| T |
7107532 |
gatttgtaaatggttgaaaggttttggcttagtcccccttccctttttgtatacctatttttggtttacatgtctgatgctctttgcatc |
7107443 |
T |
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