View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9484_low_5 (Length: 605)
Name: NF9484_low_5
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 31864239 - 31863865
Alignment:
| Q |
19 |
taagtttcatcctatattttctccaagaggggaagtggaaatcaattcctgatgcatgtttggattgagtaaaattgccggagagccaccgtgattttag |
118 |
Q |
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| T |
31864239 |
taagtttcatcctatattttctccaagaggggaagtggaaatcaattcctgatgcatgtttggattgagtaaaattgccggagagccaccgtgattttag |
31864140 |
T |
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| Q |
119 |
aaaatttgagtgtcacaaaatcatagtgtctttgtgattttgttgaattcaccatcaattcaaacatacaataagaaatagatcccaaattgttcatact |
218 |
Q |
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| T |
31864139 |
aaaatttgagtgtcacaaaatcatagtgtctttgtgattttgttgaattcaccatcaattcaaacatacaataagaaatagatcccaaattgttcatact |
31864040 |
T |
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| Q |
219 |
caatagtacaattgaaattacaaccaagtacatgctttgaattataatgactttgacaaaattacggtggcaacaaaattttatgtaagtttcaaaagat |
318 |
Q |
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| T |
31864039 |
caatagtacaattgaaattacaaccaagtacatgctttgaattataatgactttgataaaattacggtggcaacaaaattttatggaagtttcaaaagat |
31863940 |
T |
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| Q |
319 |
agcttttgtcaaaatcacaataggacacttattcttcaaagcctgaattgaatgaatgcaacatcttatcacttg |
393 |
Q |
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| T |
31863939 |
agcttttgtcaaaatcacaatagcacacttattcttcaaagcctgaattgaatgaatgcaacatcttatcacttg |
31863865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 423 - 598
Target Start/End: Complemental strand, 31863868 - 31863693
Alignment:
| Q |
423 |
cttgcatgaaatatgtaacaaactctaagcttcaaatagtaatacactaatactatactatataattaaattaaatgtgacaaacatgaataagtttacc |
522 |
Q |
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| T |
31863868 |
cttgcatgaaatatgtaacaaactctaagcttcaaatagtaatacactaatactatactatataattaaattaaatgtgacaaacatgaataagtttacc |
31863769 |
T |
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| Q |
523 |
ttatcagacttaggaataagttttctaagattagcaagctgtgtattaatcctgtctctacgtcttttctctgctt |
598 |
Q |
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| T |
31863768 |
ttatcagacttgggaataagttttctaagattagcaagctgtgtattaatcctgtctctacgtcttttctctgctt |
31863693 |
T |
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