View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9484_low_55 (Length: 253)
Name: NF9484_low_55
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 14789878 - 14789643
Alignment:
| Q |
15 |
ataggtaagtacttataaataagagacatgaaatatnnnnnnntttgttcattgcctgcatgattgttcagattgtagtcgtgaggaccatgttctttat |
114 |
Q |
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| T |
14789878 |
ataggtaagtacttataaataagagacatgaaatataaaaaaatttgttcattgcctgcatgattgttcagattgtagtcgtgaggaccatgttctttat |
14789779 |
T |
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| Q |
115 |
tttactttagtatagttaaattataattattttccttgtgtatagctgacttagggtattagattaaggaccagaaaacacttgtgattataatgcttaa |
214 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14789778 |
tttactttagtatagttaaattacaattattttccttgtgtatagctgacttagggtattagattaaggaccagaaaacacttgtgattataatggttaa |
14789679 |
T |
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| Q |
215 |
ttgtcatttttattataaaataaagagtttaggaag |
250 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
14789678 |
ttgtcatttttattataaaataaagagtttaggaag |
14789643 |
T |
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