View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9484_low_58 (Length: 250)
Name: NF9484_low_58
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_58 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 18851205 - 18850990
Alignment:
| Q |
1 |
caaatgcaggaggcatagcttttggtctagacagattggtcatgttgctagctggtgctaattcaatcagggatgtcattgctttcccaaaaacaacaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18851205 |
caaatgcaggaggcatagcttttggtctggacagattggttatgatgctagctggtgctaattcaatcagggatgtcattgctttcccaaaaacaacaac |
18851106 |
T |
|
| Q |
101 |
tgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgatagatctttcaatcactacatagataggcatttaactattcaaagtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| |||| |
|
|
| T |
18851105 |
tgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgagagatctttcaatcactgcatagataggcatttaactcttcatagtt |
18851006 |
T |
|
| Q |
201 |
ctgttgcttatgccca |
216 |
Q |
| |
|
| |||||||| |||| |
|
|
| T |
18851005 |
atattgcttataccca |
18850990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 50010882 - 50010667
Alignment:
| Q |
1 |
caaatgcaggaggcatagcttttggtctagacagattggtcatgttgctagctggtgctaattcaatcagggatgtcattgctttcccaaaaacaacaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50010882 |
caaatgcaggaggcatagcttttggtctggacagattggttatgttgctagctggggctaattcaatcagggatgtcattgctttcccaaaaacaacaac |
50010783 |
T |
|
| Q |
101 |
tgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgatagatctttcaatcactacatagataggcatttaactattcaaagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
50010782 |
tgcacagtgtgccctcacgagatcaccttctgaggtggatccccaacagctgaaagatctttcaatcactacatagataggcgtttaactcttcatagtt |
50010683 |
T |
|
| Q |
201 |
ctgttgcttatgccca |
216 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
50010682 |
ctgttgcttataccca |
50010667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 18840125 - 18839919
Alignment:
| Q |
1 |
caaatgcaggaggcatagcttttggtctagacagattggtcatgttgctagctggtgctaattcaatcagggatgtcattgctttcccaaaaacaacaac |
100 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18840125 |
caaatacaggaggcatagcttttggtttggacagattggttatgttgctagctggtgctaattcaatcagggatgtcattgctttcccaaaaacaacaac |
18840026 |
T |
|
| Q |
101 |
tgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgatagatctttcaatcactacatagataggcatttaactattcaaagtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| || | |||| |
|
|
| T |
18840025 |
tgcacagtgtgccctcacgagatcgccttccaaggtggatccccaacagctgagagatctttcaatcactacacaga----catttaactcttgatagtt |
18839930 |
T |
|
| Q |
201 |
ctgttgcttat |
211 |
Q |
| |
|
|||||||||| |
|
|
| T |
18839929 |
ttgttgcttat |
18839919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 44108159 - 44107944
Alignment:
| Q |
1 |
caaatgcaggaggcatagcttttggtctagacagattggtcatgttgctagctggtgctaattcaatcagggatgtcattgctttcccaaaaacaacaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44108159 |
caaatgcaggaggcatagcttttggtctggacagattggttatgttgctagctggggctaattcaatcagggatgtcattgctttcccaaaaacaacaac |
44108060 |
T |
|
| Q |
101 |
tgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgatagatctttcaatcactacatagataggcatttaactattcaaagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
44108059 |
tgcacagtgtgccctcacgagatcaccttctgaggtggaaccccaacagctgaaagatctttcaatcactacatagataggcgtttaactcttcatagtt |
44107960 |
T |
|
| Q |
201 |
ctgttgcttatgccca |
216 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
44107959 |
ctgttgcttataccca |
44107944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 51295501 - 51295265
Alignment:
| Q |
1 |
caaatgcaggaggcatagcttttggtctagacagattggtcatgttgctagctggtgctaattcaatcagggatgtcattgctttcccaaaaacaacaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51295501 |
caaatgcaggaggcatagcttttggtctggacagattggttatgttgctagctggtgctaattcaatcagggatgtcattgctttcccaaaaacatcaac |
51295402 |
T |
|
| Q |
101 |
tgc---------------------acagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgatagatctttcaatcactacatagata |
179 |
Q |
| |
|
||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
51295401 |
tgctttcccaaaaacaagaactgcacagtgtgccctcaccagatcaccttccgaggtggatccccgacagctgaaagatctttcaatcactacatagata |
51295302 |
T |
|
| Q |
180 |
ggcatttaactattcaaagttctgttgcttatgccca |
216 |
Q |
| |
|
||||||||||| || | |||| |||||||||| |||| |
|
|
| T |
51295301 |
ggcatttaactcttaatagttatgttgcttataccca |
51295265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University