View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9484_low_6 (Length: 503)

Name: NF9484_low_6
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9484_low_6
NF9484_low_6
[»] chr4 (17 HSPs)
chr4 (20-496)||(55635955-55636434)
chr4 (75-222)||(52984887-52985034)
chr4 (85-196)||(55664639-55664748)
chr4 (274-391)||(54627810-54627923)
chr4 (86-195)||(51315967-51316076)
chr4 (87-222)||(55658410-55658549)
chr4 (86-156)||(54861477-54861547)
chr4 (87-181)||(55620060-55620154)
chr4 (87-181)||(55627364-55627458)
chr4 (231-363)||(55658585-55658719)
chr4 (230-390)||(52985071-52985228)
chr4 (288-391)||(55664856-55664960)
chr4 (86-171)||(54628043-54628128)
chr4 (409-467)||(55664946-55665004)
chr4 (409-493)||(54627739-54627824)
chr4 (76-136)||(3671556-3671616)
chr4 (436-496)||(54861545-54861606)
[»] chr8 (3 HSPs)
chr8 (76-217)||(9890561-9890703)
chr8 (415-485)||(9890236-9890306)
chr8 (313-355)||(9890386-9890428)
[»] chr2 (2 HSPs)
chr2 (22-230)||(13402604-13402810)
chr2 (320-390)||(13402285-13402355)


Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 20 - 496
Target Start/End: Complemental strand, 55636434 - 55635955
Alignment:
Q  20 tgtccagctgtaatgcatgatatagtacgacaagcttatttcttgatgatattcgtgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccat 119  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55636434 tgtccagctgtaatgcatgatatagtacgacaagcttctttcttgatgatattcgtgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccat 55636335  T
Q  120 gattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggtggcacatcagatgacataatacaagcagtgagaagagactagatt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  55636334 gattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggtggcacatgagatgacataatacaagcagtgagaagagactagatt 55636235  T
Q  220 catggtaataagcaagtataacttttcgttcttcccaaaacaaaactcccccaccccctctaaaaacaaaattgattcctaggctaattttcgaaaattg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  55636234 catggtaataagcaagtataacttttcgttcttcccaaaacaaaactcccccaccccctctaaaaacaaaattgattcctaggctaatttttgaaaattg 55636135  T
Q  320 tcaatcaagcttcaacaaccacatactatagcattttggtgttttctcttaataaaattagagttacaaaacctgttc---nnnnnnnnnnnttagagtt 416  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||              ||||||||    
T  55636134 tcaatcaagcttcaacaaccacatactatagtattttggtgttttctcttaataaaattagagttacaaaacttgttcaaaaaaaaaaaaaattagagtt 55636035  T
Q  417 acaaaacttacctatcaataatttcaggttacaacatttcaaattttaattacatattcaaaataactacacaacaccaa 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55636034 acaaaacttacctatcaataatttcaggttacaacatttcaaattttaattacatattcaaaataactacacaacaccaa 55635955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 52984887 - 52985034
Alignment:
Q  75 tgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggt 174  Q
    |||||||||  |||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||    
T  52984887 tgtgattatgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacaggt 52984986  T
Q  175 ggcacatcagatgacataatacaagcagtgagaagagactagattcat 222  Q
    | ||||| |||||| | ||||||||  | |||||||||||||||||||    
T  52984987 gacacatgagatgaaaaaatacaaggggcgagaagagactagattcat 52985034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 55664639 - 55664748
Alignment:
Q  85 tgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggtggcacatcag 184  Q
    ||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||  ||| ||||| ||    
T  55664639 tgtcaacagactcaaaaggcatgggagtgaaccatgattgataatagcctgacaaaaagagtctcaccaaatcaagttattctcac--gtgacacatgag 55664736  T
Q  185 atgacataatac 196  Q
    |||||| |||||    
T  55664737 atgacaaaatac 55664748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 274 - 391
Target Start/End: Complemental strand, 54627923 - 54627810
Alignment:
Q  274 cccctctaaaaacaaaattgattcctaggctaat-tttcgaaaattgtcaatcaagcttcaacaaccacatactatagcattttggtgttttctcttaat 372  Q
    |||||| |||||||||| |||||||||||||||| |||| |||||| || ||||||||||||||||||||||     |||||||||||||||||||||||    
T  54627923 cccctcaaaaaacaaaactgattcctaggctaatatttctaaaattctctatcaagcttcaacaaccacata-----gcattttggtgttttctcttaat 54627829  T
Q  373 aaaattagagttacaaaac 391  Q
     |||||||| |||||||||    
T  54627828 caaattagacttacaaaac 54627810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 51316076 - 51315967
Alignment:
Q  86 gtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggtggcacatcaga 185  Q
    |||||||||||||||| |||  ||||||||||||||||||||| | |||||||||||||| ||||| |||||| |||||||  ||||||| ||||| |||    
T  51316076 gtcaacaggctcaaaaggcattggagtgaaccatgattgataacaacctgacaaaaagagccccaccaaatcaggttattcaaacaggtgacacatgaga 51315977  T
Q  186 tgacataata 195  Q
    ||||||||||    
T  51315976 tgacataata 51315967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 55658410 - 55658549
Alignment:
Q  87 tcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggtggcaca---tca 183  Q
    ||||||||||||||| | | |||||| ||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||||||| ||||   | |    
T  55658410 tcaacaggctcaaaaggaatgggagtaaaccatgattgataatagcctgacaaatagagtcctaccaaatcaagtaattctcacaggtgacacatattga 55658509  T
Q  184 gatgac-ataatacaagcagtgagaagagactagattcat 222  Q
    |||||| | || |||||  |||||||||||||||||||||    
T  55658510 gatgacaaaaagacaaggggtgagaagagactagattcat 55658549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 54861477 - 54861547
Alignment:
Q  86 gtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaat 156  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  54861477 gtcaacaggctcaaaaggcatgggagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaat 54861547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 87 - 181
Target Start/End: Original strand, 55620060 - 55620154
Alignment:
Q  87 tcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggtggcacat 181  Q
    ||||||||||||||| | | |||||| ||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||||||| |||||    
T  55620060 tcaacaggctcaaaaggaatgggagtaaaccatgattgataatagcctgacaaatagagtcctaccaaatcaagtaattctcacaggtgacacat 55620154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 87 - 181
Target Start/End: Original strand, 55627364 - 55627458
Alignment:
Q  87 tcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggtggcacat 181  Q
    ||||||||||||||| | | |||||| ||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||||||| |||||    
T  55627364 tcaacaggctcaaaaggaatgggagtaaaccatgattgataatagcctgacaaatagagtcctaccaaatcaagtaattctcacaggtgacacat 55627458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 231 - 363
Target Start/End: Original strand, 55658585 - 55658719
Alignment:
Q  231 gcaagtataacttttcgttcttcccaaaacaaaactccccc-accccctctaaaaacaaaattgattcctaggctaat-tttcgaaaattgtcaatcaag 328  Q
    |||||||||||| |||||||| ||||| |||||| |||||| |||||| | |||||| ||||||||||||||| |||| |||| |||||||||||| |||    
T  55658585 gcaagtataactattcgttctgcccaagacaaaaatccccccacccccacaaaaaaccaaattgattcctaggttaatatttctaaaattgtcaattaag 55658684  T
Q  329 cttcaacaaccacatactatagcattttggtgttt 363  Q
    ||||||||| | ||||||||| | ||| |||||||    
T  55658685 cttcaacaatcgcatactatatcttttaggtgttt 55658719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 230 - 390
Target Start/End: Original strand, 52985071 - 52985228
Alignment:
Q  230 agcaagtataacttttcgttcttcccaaaacaaaactcccccaccccctctaaaaacaaaattgattcctaggctaat-tttcgaaaattgtcaatcaag 328  Q
    |||||||||||||||| |||||||| || |||||| ||||||  |||||| ||||| ||| ||||||  ||||||| | |||| ||||||||| ||||||    
T  52985071 agcaagtataacttttggttcttccgaagacaaaa-tccccctacccctcaaaaaagaaacttgatttataggctattatttctaaaattgtcgatcaag 52985169  T
Q  329 cttcaacaaccacatactatagcattttggtgttttctcttaataaaattagagttacaaaa 390  Q
     |||||||||||||   |||||||||||||||| |||  ||||| |||||||| ||||||||    
T  52985170 tttcaacaaccaca---tatagcattttggtgtcttccgttaatcaaattagacttacaaaa 52985228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 288 - 391
Target Start/End: Original strand, 55664856 - 55664960
Alignment:
Q  288 aaattgattcctaggctaat-tttcgaaaattgtcaatcaagcttcaacaaccacatactatagcattttggtgttttctcttaataaaattagagttac 386  Q
    |||||||||||||||||||| |||  | || | |||||| ||||||||||||||||| |||| ||| |||| ||||| ||||||||||||||||| ||||    
T  55664856 aaattgattcctaggctaatatttatataactatcaatccagcttcaacaaccacatcctattgcactttgatgtttactcttaataaaattagacttac 55664955  T
Q  387 aaaac 391  Q
    |||||    
T  55664956 aaaac 55664960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 54628128 - 54628043
Alignment:
Q  86 gtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcaca 171  Q
    ||||||||||||||||  || |||||| |||||||||||| |||||||||||||||||| ||| || |||||| || |||||||||    
T  54628128 gtcaacaggctcaaaagacatgggagtaaaccatgattgacaatagcctgacaaaaagaatcctaccaaatcaggtaattctcaca 54628043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 409 - 467
Target Start/End: Original strand, 55664946 - 55665004
Alignment:
Q  409 ttagagttacaaaacttacctatcaataatttcaggttacaacatttcaaattttaatt 467  Q
    ||||| ||||||||| ||||||||||| ||||||||||| || ||||||||||||||||    
T  55664946 ttagacttacaaaacatacctatcaatgatttcaggttataatatttcaaattttaatt 55665004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 493
Target Start/End: Complemental strand, 54627824 - 54627739
Alignment:
Q  409 ttagagttacaaaacttacctatcaataatttcaggttacaacatttcaaattttaattacatattcaaaataact-acacaacac 493  Q
    ||||| |||||||||||||| |||||||||| |||  || || ||||||||||||||||| || | |||||||||| |||||||||    
T  54627824 ttagacttacaaaacttaccaatcaataattacagactataatatttcaaattttaattatatttccaaaataactaacacaacac 54627739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 3671556 - 3671616
Alignment:
Q  76 gtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctga 136  Q
    ||||||||  |||||||||||||||| ||| |||||||||||||||| || ||||||||||    
T  3671556 gtgattatgggtcaacaggctcaaaaggcatgggagtgaaccatgatcgacaatagcctga 3671616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 436 - 496
Target Start/End: Original strand, 54861545 - 54861606
Alignment:
Q  436 aatttcaggttacaacatttcaaattttaattacatattcaaaataact-acacaacaccaa 496  Q
    |||||||||||| || ||||||||||||||||| || | |||||||||| ||||||||||||    
T  54861545 aatttcaggttataatatttcaaattttaattatatttccaaaataactaacacaacaccaa 54861606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 76 - 217
Target Start/End: Complemental strand, 9890703 - 9890561
Alignment:
Q  76 gtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggtg 175  Q
    ||||||||  |||||||||||||||| ||| |||||||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||| |||    
T  9890703 gtgattatgggtcaacaggctcaaaaggcatgggagtgaaccatgatcgagaatagcctgacaaaaagagtcccacaaaatcaggtaattctcacaagtg 9890604  T
Q  176 gcacatcaga-tgacataatacaagcagtgagaagagactaga 217  Q
     ||||| ||| ||||||||||||||  ||||||||||||||||    
T  9890603 acacatgagattgacataatacaaggggtgagaagagactaga 9890561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 485
Target Start/End: Complemental strand, 9890306 - 9890236
Alignment:
Q  415 ttacaaaacttacctatcaataatttcaggttacaacatttcaaattttaattacatattcaaaataacta 485  Q
    |||||||||||||||||||||| |||||||||| || ||||||||||||||||  |  |||||||||||||    
T  9890306 ttacaaaacttacctatcaatagtttcaggttataatatttcaaattttaattttactttcaaaataacta 9890236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 9890428 - 9890386
Alignment:
Q  313 aaaattgtcaatcaagcttcaacaaccacatactatagcattt 355  Q
    ||||||||| ||||||||||||||||||| |||||||||||||    
T  9890428 aaaattgtcgatcaagcttcaacaaccacgtactatagcattt 9890386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 13402810 - 13402604
Alignment:
Q  22 tccagctgtaatgcatgatatagtacgacaagcttatttcttgatgatattcgtgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatga 121  Q
    |||||||||||||  ||||||||| |  ||||||| |||||| ||  | ||| |||||||||  ||||||||||||||||  || |||||||||||||||    
T  13402810 tccagctgtaatgtttgatatagtccagcaagcttctttcttaatacttttcttgtgattatgggtcaacaggctcaaaagacatgggagtgaaccatga 13402711  T
Q  122 ttgataatagcctgacaaaaagagtccc-acaaaatcaagttattctcacaggtggcacatcagatgacataatacaagcagtgagaagagactagattc 220  Q
       ||||||||||||||||||||||||| |||||||||  | | ||||| |||||   ||| |||||||  || |||| | ||||||||| ||||||||     
T  13402710 ccaataatagcctgacaaaaagagtcccaacaaaatcagataactctcaaaggtgatgcatgagatgac--aaaacaaac-gtgagaagaaactagatta 13402614  T
Q  221 atggtaataa 230  Q
    ||||||||||    
T  13402613 atggtaataa 13402604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 390
Target Start/End: Complemental strand, 13402355 - 13402285
Alignment:
Q  320 tcaatcaagcttcaacaaccacatactatagcattttggtgttttctcttaataaaattagagttacaaaa 390  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| || ||| |||||||| || |||||    
T  13402355 tcaatcaagcttcaacaaccacatactttagcattttggtgttttccctaaatcaaattagacttgcaaaa 13402285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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