View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9484_low_64 (Length: 243)
Name: NF9484_low_64
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 11761739 - 11761546
Alignment:
| Q |
1 |
atcgacttaagataaccatttttctttcaatgggtaggaaactatcctcaccaatccataactgatgcactccttccagctaatttgtaatcatagatag |
100 |
Q |
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| T |
11761739 |
atcgacttaagataaccatttttcttccaatgggtagaaaactatcctcaccaatccataactgatgcactccttccagctaatttgtaatcatagatag |
11761640 |
T |
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| Q |
101 |
cgtaacaaccactccatgctctgttgaagtgaagatattataaatttcatattaaaaacatcaatactaccaatagtaagagaaatcaaatgtt |
194 |
Q |
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| T |
11761639 |
cgtaacaaccactccatgctctgttgaagtgaagatattataaatttcatattaaaaacatcaatactaccaatagtaagagaaatcaaatgtt |
11761546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 11761533 - 11761484
Alignment:
| Q |
178 |
aagagaaatcaaatgttaataaataatttattttactcacattattgtgt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11761533 |
aagagaaatcaaatgttaataaataatttattttactcacattattgtgt |
11761484 |
T |
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