View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9484_low_65 (Length: 238)
Name: NF9484_low_65
Description: NF9484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9484_low_65 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 38 - 238
Target Start/End: Complemental strand, 18851407 - 18851187
Alignment:
| Q |
38 |
tcatttcacacatcagttataagtatagaaataatataacattactttccatttccactaaactgtaaacatttcaataaaaacatctaatatttatcaa |
137 |
Q |
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| T |
18851407 |
tcatttcacacatcagttttaagtttagaaataatataatattactttccattcccactaaactgtaaacatttcaataaatacatataacatttatcaa |
18851308 |
T |
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| Q |
138 |
gttgaaatttaatcggcgtatctttatttgcaca--------------------ctatatgttcaataacagttgattttatcgatgattgttattatat |
217 |
Q |
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| T |
18851307 |
gttcaaatttaatcggcgtatctttatttgaacacaggcgcaccgattgtatctcaatatgtttaatagcagttgattttatcgataattgttattatat |
18851208 |
T |
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| Q |
218 |
atcaaatgcaggaggcatagc |
238 |
Q |
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| T |
18851207 |
atcaaatgcaggaggcatagc |
18851187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 50011098 - 50010959
Alignment:
| Q |
38 |
tcatttcacacatcagttataagtatagaaataatataacatt-actttccatttccactaaactgtaaacatttcaataaaaacatctaatatttatca |
136 |
Q |
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| T |
50011098 |
tcatttcacacatcagttataagtatataagtaatataatatttactttcctttcccactaaaccgaaaacatttcaataaaaacatctaatatttatca |
50010999 |
T |
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| Q |
137 |
agttgaaatttaatcggcgtatctttatttgcacactata |
176 |
Q |
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| T |
50010998 |
agttgaaatttaattggcatatctttattttaacactata |
50010959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 50010929 - 50010864
Alignment:
| Q |
174 |
atatgttcaataacagttgattttatcgatgattgtta-ttatatatcaaatgcaggaggcatagc |
238 |
Q |
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| T |
50010929 |
atatgtttaataacagttgattttatcgatgattattatttatatatcaaatgcaggaggcatagc |
50010864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 18840161 - 18840107
Alignment:
| Q |
186 |
acagttgattttatcgatgattgttattat--atatcaaatgcaggaggcatagc |
238 |
Q |
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| T |
18840161 |
acagttgattttatcgatgattgttattatatatatcaaatacaggaggcatagc |
18840107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 38 - 162
Target Start/End: Complemental strand, 44108369 - 44108245
Alignment:
| Q |
38 |
tcatttcacacatcagttataagtatagaaataatataacattactttccatttccactaaactgtaaacatttcaataaaaacatctaatatttatcaa |
137 |
Q |
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||||||||||||||||||||||||||| || |||||||| |||||||||| || ||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
44108369 |
tcatttcacacatcagttataagtatataagtaatataatattactttcctttcccactaaaccgaaaacatttcaataaaaacatctaatatttatcaa |
44108270 |
T |
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| Q |
138 |
gttgaaatttaatcggcgtatcttt |
162 |
Q |
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| T |
44108269 |
gttgaaatttaattggcatatcttt |
44108245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 174
Target Start/End: Complemental strand, 51295694 - 51295582
Alignment:
| Q |
62 |
atagaaataatataacattactttccatttccactaaactgtaaacatttcaataaaaacatctaatatttatcaagttgaaatttaatcggcgtatctt |
161 |
Q |
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| T |
51295694 |
atagaaataatataatattactttccgttccctctaaactaaaaacatctcaataaaaacatcttatattcatcaagttggaatttaattggcgtatctt |
51295595 |
T |
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| Q |
162 |
tatttgcacacta |
174 |
Q |
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| T |
51295594 |
tatttgaacacta |
51295582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 51295547 - 51295483
Alignment:
| Q |
174 |
atatgttcaataacagttgattttatcgatgattgttattatatatcaaatgcaggaggcatagc |
238 |
Q |
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| T |
51295547 |
atatgtttaatagcagttgattttatccatgattgttattatatatcaaatgcaggaggcatagc |
51295483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 51295936 - 51295904
Alignment:
| Q |
38 |
tcatttcacacatcagttataagtatagaaata |
70 |
Q |
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| T |
51295936 |
tcatttcacacatcagttataagtataaaaata |
51295904 |
T |
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