View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9485_low_1 (Length: 344)
Name: NF9485_low_1
Description: NF9485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9485_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 22264960 - 22264778
Alignment:
| Q |
15 |
aatatattatggtaatattcatgttggtctttataatattagttctttaaccaagattaaacttatctttaaattaccttccgtggatggtaatgaaaag |
114 |
Q |
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| T |
22264960 |
aatatattatggtaatattcatgttggtctttataatattggttctttaaccaagattaaacttatctttaaattaccttcagtggatggtaatgaaaag |
22264861 |
T |
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| Q |
115 |
atataataaatgaattcgaagtaaaataatatcatagaaaaaggggatatgaattgctatatattaaaaatttactaataaaa |
197 |
Q |
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| T |
22264860 |
atataataaatgaattcgaagtaaaataatatcatagaaaaaggggatatgaattgctatatattaaaaatttactaacaaaa |
22264778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 225 - 340
Target Start/End: Complemental strand, 22264772 - 22264657
Alignment:
| Q |
225 |
taacaaataaaatcttgattgcgaaagagacttttataatcgttgattgcctttaatgtgttactatctttcttgagaactnnnnnnntaaaataaagag |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22264772 |
taacaaataaaatcttgattgcgaaagagacttttataatcgttgattgcctttaatgtgttactatctttcttgagaactaaaaaaataaaataaagag |
22264673 |
T |
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| Q |
325 |
tagcttgcctttgctt |
340 |
Q |
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|||||||||| ||||| |
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| T |
22264672 |
tagcttgcctatgctt |
22264657 |
T |
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