View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9485_low_5 (Length: 225)

Name: NF9485_low_5
Description: NF9485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9485_low_5
NF9485_low_5
[»] chr3 (4 HSPs)
chr3 (17-141)||(41825480-41825604)
chr3 (17-90)||(29611525-29611597)
chr3 (91-139)||(17711928-17711976)
chr3 (91-139)||(19013185-19013233)
[»] chr1 (2 HSPs)
chr1 (17-139)||(31808311-31808433)
chr1 (17-142)||(50537280-50537405)
[»] chr7 (3 HSPs)
chr7 (17-139)||(15827178-15827305)
chr7 (147-208)||(14794066-14794128)
chr7 (147-208)||(15241058-15241120)
[»] chr5 (1 HSPs)
chr5 (147-204)||(17538300-17538357)
[»] chr8 (2 HSPs)
chr8 (91-139)||(12181062-12181110)
chr8 (91-139)||(12425490-12425538)
[»] chr6 (1 HSPs)
chr6 (91-139)||(11273311-11273359)


Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 41825480 - 41825604
Alignment:
Q  17 attctgtgcaaagaaattaattcagggggttcatagctaaaattttatgagaaggtaggtgcaaattttttgatgtcagggtatgcaagtgcatcccctc 116  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41825480 attcggtgcaaagaaattaattcagagggttcatagctaaaattttatgagaaggtaggtgcaaattttttgatgtcagggtatgcaagtgcatcccctc 41825579  T
Q  117 aattcaacgtggctccgccactgca 141  Q
    ||||||| |||||||||||||||||    
T  41825580 aattcaatgtggctccgccactgca 41825604  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 29611597 - 29611525
Alignment:
Q  17 attctgtgcaaagaaattaattcagggggttcatagctaaaattttatgagaaggtaggtgcaaattttttgat 90  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29611597 attcggtgcaaagaaattaattcagggg-ttcatagctaaaattttatgagaaggtaggtgcaaattttttgat 29611525  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 17711976 - 17711928
Alignment:
Q  91 gtcagggtatgcaagtgcatcccctcaattcaacgtggctccgccactg 139  Q
    ||||||| |||||||||||||| ||||||   |||||||||||||||||    
T  17711976 gtcaggggatgcaagtgcatcctctcaatggtacgtggctccgccactg 17711928  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 19013233 - 19013185
Alignment:
Q  91 gtcagggtatgcaagtgcatcccctcaattcaacgtggctccgccactg 139  Q
    ||||||| |||||||||||||| ||||||   |||||||||||||||||    
T  19013233 gtcaggggatgcaagtgcatcctctcaatggtacgtggctccgccactg 19013185  T

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Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 31808311 - 31808433
Alignment:
Q  17 attctgtgcaaagaaattaattcagggggttcatagctaaaattttatgagaaggtaggtgcaaattttttgatgtcagggtatgcaagtgcatcccctc 116  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31808311 attcggtgcaaagaaattaattcagagggttcatagctaaaattttattagaaggtaggtgcaaattttttgatgtcagggaatgcaagtgcatcccctc 31808410  T
Q  117 aattcaacgtggctccgccactg 139  Q
    |||| || |||||||||||||||    
T  31808411 aatttaatgtggctccgccactg 31808433  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 50537280 - 50537405
Alignment:
Q  17 attctgtgcaaagaaattaattcagggggttcatagctaaaattttatgagaaggtaggtgcaaattttttgatgtcagggtatgcaagtgcatcccctc 116  Q
    |||| ||||||| || ||| |||||| ||||||||| | ||||||||||| |||||| ||||||  |||| ||||||||||||||||| |||||||||||    
T  50537280 attcggtgcaaacaagttagttcaggaggttcatagtttaaattttatgaaaaggtatgtgcaatattttagatgtcagggtatgcaattgcatcccctc 50537379  T
Q  117 aattcaacgtggctccgccactgcat 142  Q
    || |||| ||||||||||||||||||    
T  50537380 aagtcaatgtggctccgccactgcat 50537405  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 15827305 - 15827178
Alignment:
Q  17 attctgtgcaaagaaattaattcagggggttcatagctaaaattttatgagaaggtaggtgcaaattttttgatgtcagggtatgc-----aagtgcatc 111  Q
    |||| |||||||||||||| || ||| ||||||||| ||| |||||| |||||||||||| ||| |||||||||| ||||||||||     |||||||||    
T  15827305 attcggtgcaaagaaattagttgaggaggttcatagttaagattttacgagaaggtaggtccaatttttttgatgccagggtatgcaagctaagtgcatc 15827206  T
Q  112 ccctcaattcaacgtggctccgccactg 139  Q
    ||||||| |||| ||||||| |||||||    
T  15827205 ccctcaactcaatgtggctctgccactg 15827178  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 14794066 - 14794128
Alignment:
Q  147 tacttattgtcttaaagttatagatggttatgtt-gtgtcaaaatctcttaagggtttggaat 208  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14794066 tactcattgttttaaagttatagatggttatgtttgtgtcaaaatctcttaagggtttggaat 14794128  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 15241058 - 15241120
Alignment:
Q  147 tacttattgtcttaaagttatagatggttatgtt-gtgtcaaaatctcttaagggtttggaat 208  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15241058 tactcattgttttaaagttatagatggttatgtttgtgtcaaaatctcttaagggtttggaat 15241120  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 17538357 - 17538300
Alignment:
Q  147 tacttattgtcttaaagttatagatggttatgttgtgtcaaaatctcttaagggtttg 204  Q
    |||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17538357 tactcattgccttaaagttatagatggttatgttgtgtctaaatctcttaagggtttg 17538300  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 12181110 - 12181062
Alignment:
Q  91 gtcagggtatgcaagtgcatcccctcaattcaacgtggctccgccactg 139  Q
    ||||||| |||||||||||||| ||||||   |||||||||||||||||    
T  12181110 gtcaggggatgcaagtgcatcctctcaatggtacgtggctccgccactg 12181062  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 12425538 - 12425490
Alignment:
Q  91 gtcagggtatgcaagtgcatcccctcaattcaacgtggctccgccactg 139  Q
    ||||||| |||||||||||||| ||||||   |||||||||||||||||    
T  12425538 gtcaggggatgcaagtgcatcctctcaatggtacgtggctccgccactg 12425490  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 11273359 - 11273311
Alignment:
Q  91 gtcagggtatgcaagtgcatcccctcaattcaacgtggctccgccactg 139  Q
    ||||||| |||||||||||||| ||||||   |||||||||||||||||    
T  11273359 gtcaggggatgcaagtgcatcctctcaatggtacgtggctccgccactg 11273311  T

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