View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9486_high_14 (Length: 330)
Name: NF9486_high_14
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 3 - 309
Target Start/End: Original strand, 7034369 - 7034670
Alignment:
| Q |
3 |
aaatgatgaaacagaattagaaacagcaagaataatcatcacgaagtaattccagataactaaaaactagtacaaatataacagcaaaagaatcatgtaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7034369 |
aaatgatgaaacagaattagaaacagcaagaataaacatcacgaagtaattccagataactaaaaactagtacaaatataacagcaaaagaatcatgtaa |
7034468 |
T |
|
| Q |
103 |
tttgattgcaagaaatgtctttcgaaagaatatttaggataagtttagatgtgctaaatttgatgccaagtcctagtgtgttgcttattccagacaccct |
202 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7034469 |
tttgattgcaagaaatgtc---------aatatttaggataagcttagatgtgctaaatttgatgccaagtcctagtatgttgcttattccagacaccct |
7034559 |
T |
|
| Q |
203 |
tttagaaaattggagatac----gtgcaaaattaaagtcagataccaatgctaattctaacttttgcttaactatccttacatgtaaaacagaacaaagc |
298 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| |
|
|
| T |
7034560 |
tttagaaaattggagatacaagagtgcaaaattatagtcaaataccaatgctaattctaacttttgcacaactatccatacatgtaaatcagaacaaagc |
7034659 |
T |
|
| Q |
299 |
acaaaatatag |
309 |
Q |
| |
|
||||||||||| |
|
|
| T |
7034660 |
acaaaatatag |
7034670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 29376360 - 29376473
Alignment:
| Q |
101 |
aatttgattgcaagaaatgtctttcgaaagaatatttaggataagtttagatgtgctaaatttgatgccaagtcctagtgtgttgcttattccagacacc |
200 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| | |||||| |||||||| ||||| | |||||||||||||||||||||||| |||||||| |
|
|
| T |
29376360 |
aatttgattgcaaagaatgtcttttgaaagaatatttagaacaagttttgatgtgctgaatttaacaccaagtcctagtgtgttgcttatttcagacacc |
29376459 |
T |
|
| Q |
201 |
cttttagaaaattg |
214 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
29376460 |
cttttgaaaaattg |
29376473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 16489500 - 16489443
Alignment:
| Q |
164 |
gatgccaagtcctagtgtgttgcttattccagacacccttttagaaaattggagatac |
221 |
Q |
| |
|
|||| |||||||||||||||| |||||||| |||||||||| |||||||||||||| |
|
|
| T |
16489500 |
gatgtcaagtcctagtgtgttacttattcctaacacccttttgaaaaattggagatac |
16489443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 16490604 - 16490530
Alignment:
| Q |
3 |
aaatgatgaaacagaattagaaacagcaagaataatcatcacgaagtaattccagataactaaaaactagtacaa |
77 |
Q |
| |
|
||||||||||||| |||||||| |||||| ||||| || || ||||||||||| | | |||| ||||||||||| |
|
|
| T |
16490604 |
aaatgatgaaacaaaattagaagcagcaaaaataaacaacattaagtaattccaaagacctaataactagtacaa |
16490530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University