View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9486_high_17 (Length: 286)
Name: NF9486_high_17
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 1141411 - 1141145
Alignment:
| Q |
1 |
ccctgaattcattacataaatcattgaatatgatcaatgnnnnnnnngtaaatatatgcaaaatcaattgaattgcattaactttggtgcaaacgtgagc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1141411 |
ccctgaattcattacataaataattgaatatgatcaatgaaaaaaaagtaaatatatgcaaaatcaattgaattgcattaactttggtgcaaatgtgagc |
1141312 |
T |
|
| Q |
101 |
agtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgtctttccattgtactcacaagtgcttccaaaccttaacctct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1141311 |
agtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgtctttccattgtactcacaagtgcttccaaaccttaacctct |
1141212 |
T |
|
| Q |
201 |
ccaaaaaatcaatagtcacatctttgctactaaactttgctggatgggctccacctcttgaccaatc |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1141211 |
ccaaaaaatcaatagtcacatctttgctactaaactttgctggatgggctccacctcttgaccaatc |
1141145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 1137954 - 1137684
Alignment:
| Q |
1 |
ccctgaattcattacataaatcattgaatatgatcaatgnnnnnnnn----gtaaatatatgcaaaatcaattgaattgcattaactttggtgcaaacgt |
96 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||| ||| || ||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
1137954 |
ccctgaattcattacatgaatcattgaatgtgatcaatgaagaaaaaaaaagtacatctatgcaaaatcaattgaattgcattaactttggggcaaatgt |
1137855 |
T |
|
| Q |
97 |
gagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgtctttccattgtactcacaagtgcttccaaaccttaac |
196 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1137854 |
gagcaatccatccaaagcttgagttccgaatttccttgcaaacaaatgacaaacattggttgtttttccattgtactcacaagtgcttccaaatcttaat |
1137755 |
T |
|
| Q |
197 |
ctctccaaaaaatcaatagtcacatctttgctactaaactttgctggatgggctccacctcttgaccaatc |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1137754 |
ctctccaaaaaatcaatagtcacatctttgctactaaactttgctggatgggctccaccttttgaccaatc |
1137684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 60 - 267
Target Start/End: Original strand, 31266268 - 31266475
Alignment:
| Q |
60 |
aaaatcaattgaattgcattaactttggtgcaaacgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgt |
159 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| | |||| || ||||||||| |||| | ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31266268 |
aaaatcaattgaattgcatcaactttggagcaaatctaagcaatctatccaaagcatgaggagtgaatttccttgcaaacaaatgacaaacattgattgt |
31266367 |
T |
|
| Q |
160 |
ctttccattgtactcacaagtgcttccaaaccttaacctctccaaaaaatcaatagtcacatctttgctactaaactttgctggatgggctccacctctt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |||||| | |||||| | ||||||| || |
|
|
| T |
31266368 |
ctttccattgtactcacaagtgcttccaaaccttaacctctccaaaaaatcaatagtcaaatgttgtctaaaaaacttagatggatgtggtccacctttt |
31266467 |
T |
|
| Q |
260 |
gaccaatc |
267 |
Q |
| |
|
|||||||| |
|
|
| T |
31266468 |
gaccaatc |
31266475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 60 - 267
Target Start/End: Original strand, 54474217 - 54474424
Alignment:
| Q |
60 |
aaaatcaattgaattgcattaactttggtgcaaacgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgt |
159 |
Q |
| |
|
|||||||||||||||||||||| | | ||||| |||||| | ||||||||| | || || ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54474217 |
aaaatcaattgaattgcattaaatctttagcaaatctgagcaaactatccaaagcatcaggactgaatttccttgcaaacaaatggcaaacattggttgt |
54474316 |
T |
|
| Q |
160 |
ctttccattgtactcacaagtgcttccaaaccttaacctctccaaaaaatcaatagtcacatctttgctactaaactttgctggatgggctccacctctt |
259 |
Q |
| |
|
| ||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| | |||| |||| |||||| |||||| || |
|
|
| T |
54474317 |
ccttccattgtactcacaactgctaccaaaccttaacctctccaaaaaatctttagtcacatctttgccattaaattttgatggatgtcgtccaccattt |
54474416 |
T |
|
| Q |
260 |
gaccaatc |
267 |
Q |
| |
|
|||||||| |
|
|
| T |
54474417 |
gaccaatc |
54474424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 267
Target Start/End: Original strand, 48323126 - 48323330
Alignment:
| Q |
60 |
aaaatcaattgaattgcattaactttggtgcaaacgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgt |
159 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | | | || | ||||||||| |||| | ||| |||||||||||||||||||||| ||| ||| |
|
|
| T |
48323126 |
aaaatcaattgaattgcattaactttggagcatatctaaccaatatatccaaagcatgaggagtgaacttccttgcaaacaaatgacaaa---tggatgt |
48323222 |
T |
|
| Q |
160 |
ctttccattgtactcacaagtgcttccaaaccttaacctctccaaaaaatcaatagtcacatctttgctactaaactttgctggatgggctccacctctt |
259 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||| |||||||||||||| ||| ||||||||||||| | |||| ||| ||||||| ||||||| || |
|
|
| T |
48323223 |
ccttccattgtgctcacaagtgcttccaaacctcaacctctccaaaaattcagtagtcacatcttttcctgtaaaacttgaaggatggggtccacctttt |
48323322 |
T |
|
| Q |
260 |
gaccaatc |
267 |
Q |
| |
|
|||||||| |
|
|
| T |
48323323 |
gaccaatc |
48323330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University