View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9486_high_2 (Length: 555)
Name: NF9486_high_2
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 24 - 551
Target Start/End: Original strand, 11118619 - 11119135
Alignment:
| Q |
24 |
tatcaaacgatgatatttagataagatgatatgagtctccttaatttttaatttgaatttaatcatgaaccatagtgatattaaaatttaaactattgag |
123 |
Q |
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| T |
11118619 |
tatcaaaccatgatatttagataagatgatatgagcctccttaattttaaatttgaatttaatcatgtaccatagtgatattaaaattta---------- |
11118708 |
T |
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| Q |
124 |
gagagttgtcgcgactttagatttcacatgactcggat-------nnnnnnnnnnnggacaaactgcatccattaacaatcaaataagnnnnnnnaaaag |
216 |
Q |
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| T |
11118709 |
--------tcgcgactttagatttcacatgactcggataaaaaaaaaaaaaaaaaaggacaaactgcatccattaacactcaaataagtatttttaaaag |
11118800 |
T |
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| Q |
217 |
taattaaattttgatgaggaattgtttgaactaggattcaaactcgaattcttccgnnnnnnntgtgtatcttactagatcttattaatccctagagcta |
316 |
Q |
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| T |
11118801 |
taattaaatcttgatgaggaattgtttgaactaggattcaaactcgaattcttccaaaaaaaatgtgtatcttactagatcttattaatccctagagcta |
11118900 |
T |
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| Q |
317 |
tatagcacatgatgtaggagtatatgatttacttgaatgcttcaatttcaggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgatt |
416 |
Q |
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| T |
11118901 |
tatagcacatgatgtaggagtatatgatttacttgaatggttcaatttcaggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgatt |
11119000 |
T |
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| Q |
417 |
atacgacttcgaaaatactggcaaacctgatccaactcttgacccaacatacttaaaacagttgcaaaaacaatgtcctcaaaatggacctggaaataac |
516 |
Q |
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| T |
11119001 |
atacgacttcgacaatactggcaaacctgatccaactcttgacccaacatacttaaaacagttgcaaaaacaatgtcctcaaaatggacctggaaataac |
11119100 |
T |
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| Q |
517 |
gttgtcattttcgatccaacaactcctgataaatt |
551 |
Q |
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| T |
11119101 |
gttgtcaattttgatccaacaactcccgataaatt |
11119135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 356 - 547
Target Start/End: Original strand, 11111169 - 11111360
Alignment:
| Q |
356 |
cttcaatttcaggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgattatacgacttcgaaaatactggcaaacctgatccaactct |
455 |
Q |
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| T |
11111169 |
cttcaacttcaggtgctcatacatttgggagagcacgttgccttttcatccttgatcgattatacaacttcaacaatactggcaaacccgatccaactct |
11111268 |
T |
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| Q |
456 |
tgacccaacatacttaaaacagttgcaaaaacaatgtcctcaaaatggacctggaaataacgttgtcattttcgatccaacaactcctgata |
547 |
Q |
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| T |
11111269 |
tgatacaacatacttacaacagttgcgaaaccaatgccctcagaatggaactggaaataaccgtgttaatttcgacccaacgactcctgata |
11111360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 334 - 547
Target Start/End: Complemental strand, 10793649 - 10793434
Alignment:
| Q |
334 |
gagtatatgatttacttgaatgcttcaattt--caggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgattatacgacttcgaaaa |
431 |
Q |
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| T |
10793649 |
gagtatatgatttacttatatgcttgaatattccaggtgcacacacatttgggagagcacgttgttctttattcgttgatcgattatacaacttcagcaa |
10793550 |
T |
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| Q |
432 |
tactggcaaacctgatccaactcttgacccaacatacttaaaacagttgcaaaaacaatgtcctcaaaatggacctggaaataacgttgtcattttcgat |
531 |
Q |
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| T |
10793549 |
tactggcgaacctgatccaactcttgatacaacgtacttaaaacaattgcaaaacgaatgtcctcaaaatggacctggaaataaccgtgtaaatttcgac |
10793450 |
T |
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| Q |
532 |
ccaacaactcctgata |
547 |
Q |
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| T |
10793449 |
ccaactactcctgata |
10793434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 456
Target Start/End: Original strand, 11137476 - 11137579
Alignment:
| Q |
353 |
atgcttcaatttcaggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgattatacgacttcgaaaatactggcaaacctgatccaac |
452 |
Q |
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| T |
11137476 |
atgcttcaaatgtaggtgctcatacattcggaagagcacgttgcactttcatcactgatcgattatacaacttcagcagtacaggaaaacctgatccaac |
11137575 |
T |
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| Q |
453 |
tctt |
456 |
Q |
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|||| |
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| T |
11137576 |
tctt |
11137579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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