View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9486_high_30 (Length: 221)
Name: NF9486_high_30
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 4651581 - 4651394
Alignment:
| Q |
18 |
acataagaatgaagatcctccttttctttgttgtcacactcttagcaacatgtcatggtaatgttgaaaaccatgaacatgaatcaaacttcaacatttt |
117 |
Q |
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| T |
4651581 |
acataagaatgaagatcctccttttctttcttgtcacactcttagcaacatgtcatggtaatgttcaaaaccatgaacatgaatcaaatttcaacatttt |
4651482 |
T |
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| Q |
118 |
ccctctccgaatgaaaactggtccaggtggaaaatacattccagaagtgtcatgtgctagttggagagttgctgttgaagcacgtaac |
205 |
Q |
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| T |
4651481 |
ccctctccgaatgaaaactggtccaggtggaaaatacattccagaagtgtcatgtgctagttggagagttgctgttgaagcacgtaac |
4651394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 23678678 - 23678788
Alignment:
| Q |
95 |
catgaatcaaacttcaacattttccctctccgaatgaaaactggtccaggtggaaaatacattccagaagtgtcatgtgctagttggagagttgctgttg |
194 |
Q |
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| T |
23678678 |
catgaatcaaccttcaacattttccctctccgaatgaaaactggtccaggtggaaaatacattccagacgtgtcatgtgctagttggagagttattgttg |
23678777 |
T |
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| Q |
195 |
aagcacgtaac |
205 |
Q |
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| T |
23678778 |
aagcacataac |
23678788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 23676492 - 23676574
Alignment:
| Q |
18 |
acataagaatgaagatcctccttttctttgttgtcacactcttagcaacatgtcatggtaatgttgaaaaccatgaacatgaa |
100 |
Q |
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| T |
23676492 |
acataaaaatgaagatcctccttttctttgttgttacactcttagcaacatgtcatggtaatgttgtaaaccatgaacatgaa |
23676574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 23698816 - 23699000
Alignment:
| Q |
19 |
cataagaatgaagatcctccttttctttgttgtcacactctt---agcaacatgtcatggtaatgttgaaaaccatgaacatgaatcaaacttcaacatt |
115 |
Q |
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||||||||||||||||||| |||||||| |||| |||||||| |||||||||||||||||| || ||||||||| |||| ||||| | | ||| |
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| T |
23698816 |
cataagaatgaagatcctcattttcttttttgttacactcttcttagcaacatgtcatggtaacattctaaaccatgatcatggttcaaataaccaaatt |
23698915 |
T |
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| Q |
116 |
ttccctctccgaatgaaaactggtccaggtggaaaatacattccagaagtgtcatgtgctagttggagagttgctgttgaagcac |
200 |
Q |
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| T |
23698916 |
ttcccacttcgagtgaaatctggctcaggtggccactacattccaaaagtatcatgtgctagttggagacttggtgttgaagcac |
23699000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 4647020 - 4646970
Alignment:
| Q |
28 |
gaagatcctccttttctttgttgtcacactcttagcaacatgtcatggtaa |
78 |
Q |
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| T |
4647020 |
gaagatcctcattttcttttttgttacactcttagttacatgtcatggtaa |
4646970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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