View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9486_low_1 (Length: 646)
Name: NF9486_low_1
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 563; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Complemental strand, 8004592 - 8003982
Alignment:
| Q |
1 |
tatcatacgaacaagtaccaccagagagaacataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004592 |
tatcatacgaacaagtaccaccagagagaacataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattg |
8004493 |
T |
|
| Q |
101 |
aaaaacaatgacacttacagataagaaaagattcatcccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgaccctcataaacg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004492 |
aaaaacaatgacacttacagataagaaaaggttcatcccggtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgaccctcataaacg |
8004393 |
T |
|
| Q |
201 |
ataactttgtcagcaagataagttgccatgatgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatgacttttgcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004392 |
ataactttgtcagcaagataagttgccatgatgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatgacttttgcag |
8004293 |
T |
|
| Q |
301 |
caacaatacgctgttccgaatcaagatatgcacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgattagaaaac |
400 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8004292 |
caacaatacgctgttctgaatcaagatatgcacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgattagaaaac |
8004193 |
T |
|
| Q |
401 |
tataaatgctatttagtttaaaatgaatagatgtctaaagtagcaaaatcaaacacgcaacaaagctgagtgatatagttctaaaaatcttgctacaaca |
500 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||| |||| |||||| |||||| |
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| T |
8004192 |
tataaatactatttagtttaaaatgaatagatgtctaaagcaggaaaaacaaacacgcaacaaagctgagtgatatagttccaaaagtcttgccacaaca |
8004093 |
T |
|
| Q |
501 |
tcatcacaaatagaacagtaatggatcgtgaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaatcacaacaa |
600 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
8004092 |
tcatcacaaatagaacagtaatgaatcgtgaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacagacatagatcaatcacaacaa |
8003993 |
T |
|
| Q |
601 |
attcaagtttc |
611 |
Q |
| |
|
||||||||||| |
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| T |
8003992 |
attcaagtttc |
8003982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 13 - 610
Target Start/End: Original strand, 7900522 - 7901123
Alignment:
| Q |
13 |
aagtaccaccagagagaaca---taattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaat |
109 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||| || ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7900522 |
aagtaccaccagagagaacaacataatttttaaattttaacatgcatgataccctaaatttttaaaaagggacgaattaatgaaaccattgaaaaacaat |
7900621 |
T |
|
| Q |
110 |
gacacttacagataagaaaagattcatcccagtaagcaatgattgtggacagtttgcagtacaattaa-ttgaaggttgaccctcataaacgataacttt |
208 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||| |
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| T |
7900622 |
gacacttacagataagaaaaggttcatcccagtaagcagtgattgtggacagtttgcagtaaaattaaattgaaggttgaccctcaagaacgataacttt |
7900721 |
T |
|
| Q |
209 |
gtcagcaagataagttgccatgatgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatgacttttgcagcaacaata |
308 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
7900722 |
gtcagcaagataatttgccatgatgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatgacttttgcaactacaata |
7900821 |
T |
|
| Q |
309 |
cgctgttccgaatcaagatatgcacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgattagaaaactataaatg |
408 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
7900822 |
cgctgttcggaatcaagatatgcacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgattaaaaaactataaata |
7900921 |
T |
|
| Q |
409 |
ctatttagtttaaaatgaatagatgtctaaagtagcaaaatcaaacacgcaacaaagctgagtgatatagttctaaaaatcttgctacaacatcatcaca |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7900922 |
ctatttagtttaaaatgaatagatgtctaaagtagcaaaatcaaacacacaacaaagctgagtgatatagttctaaaaatcttgctacaacatcatcaca |
7901021 |
T |
|
| Q |
509 |
aatagaacagtaatggatcgtgaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaatcacaacaaattcaagt |
608 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||| |
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|
| T |
7901022 |
aatagaacagtaatgaatcgtgaattcaattaatattttgtttgaagtaaaatgtatacattaaagagatataaatagatcaatcacaacaaatccaagt |
7901121 |
T |
|
| Q |
609 |
tt |
610 |
Q |
| |
|
|| |
|
|
| T |
7901122 |
tt |
7901123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 31 - 398
Target Start/End: Complemental strand, 51518882 - 51518515
Alignment:
| Q |
31 |
cataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaag |
130 |
Q |
| |
|
|||| ||||| ||||||||| | |||||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
51518882 |
catactttttaaattttaactttcgtgataccctaaatttttaaaacggaatgaattaatgaaaccattgaaaaacaacgacacttacagataagaaaag |
51518783 |
T |
|
| Q |
131 |
attcatcccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgaccctcataaacgataactttgtcagcaagataagttgccatg |
230 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
51518782 |
gttcatcccggtcagcaatgattgtggacaatttgcagtacagtcaattgaaggttgaccctcataaacaataactctgtcagcaagataagttgccatg |
51518683 |
T |
|
| Q |
231 |
atgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatgacttttgcagcaacaatacgctgttccgaatcaagatatg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
51518682 |
atgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttgatgacttttgcagcaacaatacgctgttcggaatcaagatatg |
51518583 |
T |
|
| Q |
331 |
cacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgattagaaa |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51518582 |
cacttggctcatctatcagatagatgtctgcaggctgttgttgtaggacaatagcaactgattagaaa |
51518515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 530 - 611
Target Start/End: Original strand, 7904498 - 7904579
Alignment:
| Q |
530 |
gaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaatcacaacaaattcaagtttc |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
7904498 |
gaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacagacatagatcaatcacaacaaattcaagtttc |
7904579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 530 - 610
Target Start/End: Original strand, 7902873 - 7902954
Alignment:
| Q |
530 |
gaattcaattaatattttgtttgaagtaaaatgta-tacattaaagagacaaacatagatcaatcacaacaaattcaagttt |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| | | |||||||||||||||||||| ||||||| |
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|
| T |
7902873 |
gaattcaattaatattttgtttgaagtaaaatgtattacattaaagagatataaatagatcaatcacaacaaatccaagttt |
7902954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 511 - 611
Target Start/End: Complemental strand, 51518446 - 51518346
Alignment:
| Q |
511 |
tagaacagtaatggatcgtgaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaatcacaacaaattcaagttt |
610 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| || ||| | | ||| | |||||||||||||| ||||||| |
|
|
| T |
51518446 |
tagaacagtaatggaatgtgaattcaattaatattttgtttgaaataaaatgtatacatttaacagatagaaatataacaatcacaacaaatccaagttt |
51518347 |
T |
|
| Q |
611 |
c |
611 |
Q |
| |
|
| |
|
|
| T |
51518346 |
c |
51518346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 91 - 514
Target Start/End: Original strand, 1300350 - 1300778
Alignment:
| Q |
91 |
gaaaccattgaaaaacaatgacacttacagataagaaaagattcatcccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgacc |
190 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||| | ||||||||||| | ||||||||||||||| |
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|
| T |
1300350 |
gaaaccattgaaaaacaatgacacttactgataagaaaaggttcatcccagtcagcagtgattgtggagaatttgcagtacagtcaattgaaggttgacc |
1300449 |
T |
|
| Q |
191 |
ctcataaacgataactttgtcagcaagataagttgccatgatgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatg |
290 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || |
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|
| T |
1300450 |
ctcataaacaataactctgtcagcaagataagttgccatgatgaaatcatgctcaaccacaaaggctgttttctttgcatgaagaataaacctcttgata |
1300549 |
T |
|
| Q |
291 |
acttttgcagcaacaatacgctgttccgaatcaagatatgcacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactg |
390 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| || ||||||| || |
|
|
| T |
1300550 |
acttttgcagcaataatacgctgttcggaatcaagatatgcacttggctcatctatcagataaatgtctgcaggctgttgtggtaggacgatagcaattg |
1300649 |
T |
|
| Q |
391 |
attagaaaactataaatgctatttagtttaaaatgaatag------atgtctaaagtagcaaaatcaaacacgcaacaaagctgagtgatatagttctaa |
484 |
Q |
| |
|
||||||||||| ||||| |||||| |||| |||| ||||| | ||| ||||||||||| |||| || ||||||||| || ||||||||||||| |
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|
| T |
1300650 |
attagaaaactgtaaatactatttcgtttgaaataaataggagtgcacatctcaagtagcaaaa-caaagacacaacaaagccaagagatatagttctaa |
1300748 |
T |
|
| Q |
485 |
aaatcttgctacaacatcatcacaaataga |
514 |
Q |
| |
|
||||||||| | || ||| |||||||||| |
|
|
| T |
1300749 |
aaatcttgccatgacgtcagcacaaataga |
1300778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 511 - 568
Target Start/End: Original strand, 1300798 - 1300855
Alignment:
| Q |
511 |
tagaacagtaatggatcgtgaattcaattaatattttgtttgaagtaaaatgtataca |
568 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
1300798 |
tagaaccgtaatggatcaggaattcaattaatatttattttgaaataaaatgtataca |
1300855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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