View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9486_low_11 (Length: 483)
Name: NF9486_low_11
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 43462947 - 43462491
Alignment:
| Q |
19 |
aaatgtccttatccgtatagtttaattgatagagacattgtattatacatgcggagctgagttcgaaccctgaattctccacttattcgaaattctggtc |
118 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43462947 |
aaatgtccttgtccgtatagtttaattgatagagacattgtattatacatgcggagctgagttcgaaccctgaattctccacttattcgaaattttggtc |
43462848 |
T |
|
| Q |
119 |
accaaaaaatattgataaaaatgaagagttttcaacatacattaattgaataagacaaagtattaccttgctttgtccgtgggctgaacaagattagagc |
218 |
Q |
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|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43462847 |
accaaactat-ttaataaaaatgaagagttttcaacatacattaattgaataagacaaagtattaccttgctttgtccgtgggctgaacaagattagagc |
43462749 |
T |
|
| Q |
219 |
cactttggaaataccacaaaccagagttgtttggaggcaaagttaagtgtctgtttttccatgatgcaacaatgacttgagcaaatccagcaagtaaact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43462748 |
cactttggaaataccacaaaccagagttgtttggaggcaaagttaagtgtctgtttttccatgatgcaacaatgacttgagcaaatccagcaagtaaact |
43462649 |
T |
|
| Q |
319 |
cttgtttggtttcactttaacatacataaaagatcccaagaaaaacatgacagaagaaaacaacataagacccactggtataccaaaaccaataacccaa |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43462648 |
cttgtttggtttcactttaacatacataaaagatcccaagaaaaacacgacagaagaaaacaacataagacccactggtataccaaaaccaataacccaa |
43462549 |
T |
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| Q |
419 |
cctgctttaacttgaatatatactatgaataccatcgaaaccataactgaaacaccaa |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43462548 |
cctgctttaacttgaatatatactatgaataccatcgaaaccataactgaaacaccaa |
43462491 |
T |
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