View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9486_low_12 (Length: 480)
Name: NF9486_low_12
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 24358005 - 24358449
Alignment:
| Q |
1 |
gcaattatagaccaaaaatagatggaattcatattaagtaccggaaactctttccttattcatgttgatttttagtaatgcaatatataaaattgcagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24358005 |
gcaattatagaccaaaaatagatggaattcatattaagtaccggaaactctttccttattcatgttgatttttagtaatgcaatatataaaattgcagac |
24358104 |
T |
|
| Q |
101 |
aattggatttatggggccagctgttaccttgatctgcttgaattacgccaatacaccaacaatggcagctacactcttgactgcagctttaagcttaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24358105 |
aattggatttatggggccagctgttaccttgatctgcttgaattacgccaatacaccaacaatggcagctacactcttgactgcagctttaagcttaagc |
24358204 |
T |
|
| Q |
201 |
tctttcagtcaagctggttttatgctcaacatacaagtaagtccagcacacaaaaatctgaatatactctaaaactttaaacattatatttatgacattt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24358205 |
tctttcagtcaagctggttttatgctcaacatacaagtaagtccagcacacaaaaatctgaat-------------------attatatttatgacattt |
24358285 |
T |
|
| Q |
301 |
catgaacttagaaatatatgagtaacctttcacattttacatattcaggacattgctccacagtatgcaggaattttacatggtaagaacttaagaaaat |
400 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24358286 |
catgaacttagaaatatatcagtaacctttcacattttacatattcaggacattgctccacagtatgcaggaattttacatggtaagaacttaagaaaat |
24358385 |
T |
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| Q |
401 |
gtgtttggaatgtcttccctttttctaaattaagtcgttgtttttacatcatggatcatgtatt |
464 |
Q |
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| T |
24358386 |
gtgtttggaatgtcttccctttttctaaattaagtcgttgtttttacatcatggatcatgtatt |
24358449 |
T |
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