View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9486_low_14 (Length: 458)
Name: NF9486_low_14
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 32887202 - 32886967
Alignment:
| Q |
20 |
cgatggacggagatacttaacacatatcacttttctcattcaacgtagctaagaaaattaaattggctcttcaaatgcgagagagtaaaatcatcattga |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
32887202 |
cgatggacggagatacttaacaaatatcacttttctcattcaacgtagctaagaaaattaaattggctcgtcaaatgcgagagtgtaaaatcatcattga |
32887103 |
T |
|
| Q |
120 |
tcttaaacaaatttggtttgtcgttgttatagttaattgcagctagattagaattcattttaaataggtaaggcttgtgaattatgatgaaccaaataca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
32887102 |
tcttaaacaaatttggtttgtcgttgttatagttaattgcagctagattagaattcattttaaataggtaaggtttgtgaattataatgaaccaaataca |
32887003 |
T |
|
| Q |
220 |
caaataaatgttagttccatatatccaccttatgtttgaa |
259 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32887002 |
caaataaatgttagttcc----atccaccttatgtttgaa |
32886967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 32886966 - 32886883
Alignment:
| Q |
293 |
taaagagtaaatttttgtaagagcctcaatgtgtcgaactagatttcattctctgactaatattatgaggttcactttaggctc |
376 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32886966 |
taaagtgtaaatttttgtaagagcctcaatgtgtcgaactagatttcattctctgactaatattatgaggttcactttaggctc |
32886883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 388 - 432
Target Start/End: Complemental strand, 32886581 - 32886537
Alignment:
| Q |
388 |
ttttgaaatggtagagtagcatgtatgtcttcatcttttcatgtg |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32886581 |
ttttgaaatggtagagtagcatgtatgtcttcatcttttcatgtg |
32886537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University