View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9486_low_17 (Length: 447)
Name: NF9486_low_17
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 183; Significance: 8e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 248 - 430
Target Start/End: Original strand, 42719302 - 42719484
Alignment:
| Q |
248 |
acccattagagttcaaagacatctgactctatttataatggattctatgaattttgtttaattacttattattagggtgctctagaccttttttatttct |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42719302 |
acccattagagttcaaagacatctgactctatttataatggattctatgaattttgtttaattacttattattagggtgctctagaccttttttatttct |
42719401 |
T |
|
| Q |
348 |
atcttgtgtatttcttttctttaaattaaatttaaaccttatgctagcaacccttatttatatcatacttgacatatgaatct |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42719402 |
atcttgtgtatttcttttctttaaattaaatttaaaccttatgctagcaacccttatttatatcatacttgacatatgaatct |
42719484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 42719063 - 42719241
Alignment:
| Q |
9 |
tcgtgttgggcgaagtgggcgttttggaagaaaaggtgttgctatcaacttcgtcacattggaagatgcaagaatgctggctgatattcagaagttctat |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42719063 |
tcgtattgggcgaagtgggcgttttggaagaaaaggtgttgctatcaactttgtcacattggaagatgcaagaatgctggctgatattcagaagttctat |
42719162 |
T |
|
| Q |
109 |
aatgtgatcgtagaggaattgccttcaaatgttgccgatctactctgatgagttaatttttgttctttgttaagtcatc |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42719163 |
aatgtgatcgtagaggaattgccttcaaatgttgccgatctactctgatgaattaatttttgttctttgttaagtcatc |
42719241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 143
Target Start/End: Complemental strand, 17533339 - 17533227
Alignment:
| Q |
31 |
tttggaagaaaaggtgttgctatcaacttcgtcacattggaagatgcaagaatgctggctgatattcagaagttctataatgtgatcgtagaggaattgc |
130 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||||| || || | |||||||||| ||| || ||||||||||| |||||| | | ||||| ||| |
|
|
| T |
17533339 |
tttggaaggaaaggtgttgctattaactttgtcacaactgatgacgaaagaatgctgagtgacatccagaagttctacaatgtgttgattgaggagctgc |
17533240 |
T |
|
| Q |
131 |
cttcaaatgttgc |
143 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
17533239 |
cttccaatgttgc |
17533227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 6249238 - 6249073
Alignment:
| Q |
22 |
agtgggcgttttggaagaaaaggtgttgctatcaacttcgtcacattggaagatgcaagaatgctggctgatattcagaagttctataatgtgatcgtag |
121 |
Q |
| |
|
|||||||| |||||||||||||||||| | || ||||| || ||| |||||||| |||||| |||||||||||||||| ||||| ||||||| ||| |
|
|
| T |
6249238 |
agtgggcgatttggaagaaaaggtgtttcaattaactttgtaacaggagaagatgctagaatgttggctgatattcagaaattctacaatgtgactatag |
6249139 |
T |
|
| Q |
122 |
aggaattgccttcaaatgttgccgatctactctgatgagttaatttttgttctttgttaagtcatc |
187 |
Q |
| |
|
|||| |||| ||||||||||| ||| | |||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
6249138 |
aggagctgccatcaaatgttgctgatttgctctgatgagttaatttttgttctctgttaaatcatc |
6249073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 6240831 - 6240683
Alignment:
| Q |
25 |
gggcgttttggaagaaaaggtgttgctatcaacttcgtcacattggaagatgcaagaatgctggctgatattcagaagttctataatgtgatcgtagagg |
124 |
Q |
| |
|
||||| |||||||||||||| |||||||| || || || ||||| || ||| |||||| || ||||||| ||||| ||| |||||||| |||||| |
|
|
| T |
6240831 |
gggcgatttggaagaaaaggcgttgctataaattttgtgacattagatgattttagaatgttgtctgatatccagaaactctccaatgtgattatagagg |
6240732 |
T |
|
| Q |
125 |
aattgccttcaaatgttgccgatctactctgatgagttaatttttgttc |
173 |
Q |
| |
|
| |||| |||||| |||| ||| | |||| ||||||| |||||||||| |
|
|
| T |
6240731 |
agctgccatcaaattttgctgatttgctctcatgagttgatttttgttc |
6240683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 52329539 - 52329668
Alignment:
| Q |
31 |
tttggaagaaaaggtgttgctatcaacttcgtcacattggaagatgcaagaatgctggctgatattcagaagttctataatgtgatcgtagaggaattgc |
130 |
Q |
| |
|
||||| |||||||||||||| || ||||| ||||| |||||||| | |||||||| ||||| |||||||| || |||||| | || ||||| ||| |
|
|
| T |
52329539 |
tttggtagaaaaggtgttgccattaactttgtcacgaaggaagatgaaggaatgctgcgagatatccagaagttttacaatgtgttagttgaggagctgc |
52329638 |
T |
|
| Q |
131 |
cttcaaatgttgccgatctactctgatgag |
160 |
Q |
| |
|
| ||||||||||| || || |||||||||| |
|
|
| T |
52329639 |
catcaaatgttgctgagcttctctgatgag |
52329668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University