View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9486_low_18 (Length: 392)
Name: NF9486_low_18
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 49041160 - 49041526
Alignment:
| Q |
19 |
tttgcaaccctgccctttgcctcagtataagccagttcataccatagagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttcca |
118 |
Q |
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| T |
49041160 |
tttgcaacccggccctttgcctcagtataagccagttcataccatagagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttcca |
49041259 |
T |
|
| Q |
119 |
tatgccactcactgagttgaagattcttctgcaactcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctgg |
218 |
Q |
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| T |
49041260 |
tatgccactcactgagttgaagattcttctgcaactcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctgg |
49041359 |
T |
|
| Q |
219 |
tatataaggtttcacacctgaacctttcagcaacttccttctaaccaaagaaacaaaaaacatcaactgttcagaaaatggcaaaaccaatggacccaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49041360 |
tatataaggtttcacacctgaacctttcagcaacttccttctaaccaaagaaacaaaaaacatcaactgttcagaaaatggcaaaaccaatggacccaac |
49041459 |
T |
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| Q |
319 |
gttgttatgtttgttttcaaagcatctcctgcaacagccattaattctctagccaatgaaacaccaa |
385 |
Q |
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| T |
49041460 |
gttgttatgtttgttttcaaagcatctcctgcaacagccattaattctctagccaatgaaacaccaa |
49041526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 31333916 - 31333842
Alignment:
| Q |
153 |
ctcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataagg |
227 |
Q |
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| T |
31333916 |
ctcatctaaaacagctcttccaccggcatgaatgcagaaatgttcgaaagctagcttgaaatcaggaatataagg |
31333842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 15239623 - 15239448
Alignment:
| Q |
40 |
tcagtataagccagttcataccatagagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagttgaa |
139 |
Q |
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||||||||||||| ||||||||| | ||||| || |||||||| |||||||||| ||| ||||||| || |||||||||||||| ||||| | | || |
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| T |
15239623 |
tcagtataagccaattcataccacaatgaactactagaagtgttaccaaatctattcagtgtcatccttgatggttccatatgccaatcacttaaatcaa |
15239524 |
T |
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| Q |
140 |
gattcttctgcaactcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatc |
215 |
Q |
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| T |
15239523 |
gatttttctccaactcatccaaaacagctcttccaccagcatgaatacaaaaatgctcaaaagctaatttaaaatc |
15239448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 34053322 - 34053147
Alignment:
| Q |
40 |
tcagtataagccagttcataccatagagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagttgaa |
139 |
Q |
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| T |
34053322 |
tcagtataagccaattcataccataatgaactactagaagtattaccaaatctatttagtgtcattcttgatggttccatatgccaatcactaaggtcaa |
34053223 |
T |
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| Q |
140 |
gattcttctgcaactcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatc |
215 |
Q |
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| T |
34053222 |
gatttttctctaattcatccaaaacagctcttccaccagcatgaatacaaaaatgctcaaaagctaatttaaaatc |
34053147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 50087288 - 50087384
Alignment:
| Q |
135 |
ttgaagattcttctgcaactcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggtttc |
231 |
Q |
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|||||||||||| || |||||||||| ||||| | ||||||||||| ||||| ||||||||||||||| ||| ||||| |||||||| |||||| |
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| T |
50087288 |
ttgaagattcttttgtaactcatcaatcacagcacgaccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcaggtatatatggtttc |
50087384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 23499272 - 23499346
Alignment:
| Q |
153 |
ctcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataagg |
227 |
Q |
| |
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|||||| | ||||||||||||||| |||||||| ||||||||||| ||||||| ||||||||||| |||||||| |
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| T |
23499272 |
ctcatctaaaacagctcttccaccggcatgaatgcagaaatgttcgaaagctagcttgaaatctggaatataagg |
23499346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 232
Target Start/End: Original strand, 23271550 - 23271646
Alignment:
| Q |
136 |
tgaagattcttctgcaactcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggtttca |
232 |
Q |
| |
|
|||||||||||||| |||||||| | || || | |||||||||||||||||| ||||| ||||| ||| ||||||||| || |||||||| |||| |
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| T |
23271550 |
tgaagattcttctgtaactcatcgatcacggcacgtccaccagcatgaatacaaaaatgctcaaacgcttgtttgaaatcaggaatataaggcttca |
23271646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 26453392 - 26453318
Alignment:
| Q |
153 |
ctcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataagg |
227 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||| ||||| |||||||| | || ||||| ||||||||||| |
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| T |
26453392 |
ctcatcaatcacagctctaccaccagcatgaatacaaaaatgctcaaaagcaagcttaaaatcaggtatataagg |
26453318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 46572703 - 46572635
Alignment:
| Q |
162 |
aacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggttt |
230 |
Q |
| |
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||||||||| || || ||||| || || |||||||||||||||| |||||||| || ||||||||||| |
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| T |
46572703 |
aacagctctacctccggcatggatgcaaaaatgttcaaaagctagcttgaaatcaggaatataaggttt |
46572635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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